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Circulating Tumor DNA As Biomarkers for Cancer Detection
Genomics Proteomics Bioinformatics 15 (2017) 59–72 HOSTED BY Genomics Proteomics Bioinformatics www.elsevier.com/locate/gpb www.sciencedirect.com REVIEW Circulating Tumor DNA as Biomarkers for Cancer Detection Xiao Han 1,2,a, Junyun Wang 1,b, Yingli Sun 1,*,c 1 CAS Key Laboratory of Genomic and Precision Medicine, China Gastrointestinal Cancer Research Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 2 University of Chinese Academy of Sciences, Beijing 100049, China Received 1 July 2016; revised 13 December 2016; accepted 20 December 2016 Available online 7 April 2017 Handled by Cesar Wong KEYWORDS Abstract Detection of circulating tumor DNAs (ctDNAs) in cancer patients is an important com- Precision medicine; ponent of cancer precision medicine ctDNAs. Compared to the traditional physical and biochemical Liquid biopsy; methods, blood-based ctDNA detection offers a non-invasive and easily accessible way for cancer Circulating tumor DNA; diagnosis, prognostic determination, and guidance for treatment. While studies on this topic are Biomarker; currently underway, clinical translation of ctDNA detection in various types of cancers has been Clinical diagnosis; attracting much attention, due to the great potential of ctDNA as blood-based biomarkers for early Cell-free nucleic acids diagnosis and treatment of cancers. ctDNAs are detected and tracked primarily based on tumor- related genetic and epigenetic alterations. In this article, we reviewed the available studies on ctDNA detection and described the representative methods. We also discussed the current understanding of ctDNAs in cancer patients and their availability as potential biomarkers for clin- ical purposes. Considering the progress made and challenges involved in accurate detection of speci- fic cell-free nucleic acids, ctDNAs hold promise to serve as biomarkers for cancer patients, and further validation is needed prior to their broad clinical use. -
INTRINSIC FACTORS in the ETIOLOGY of NEOPLASMS' It Is
INTRINSIC FACTORS IN THE ETIOLOGY OF NEOPLASMS' CARL V. WELLER, MS., M.D. (From the Department of Pathology, University of Michigan) It is as true as it is trite that the cause of disease is never a single factor. Two elements always enter into etiology. One of these is inherent in the germ plasm of the individual; the other brought to bear upon the organism from beyond the confines of the germinal elements from which it has devel- oped. Better than internal and external, endogenous and exogenous, or con- stitutional and environmental, to designate these two groups of factors, are the terms intrinsic and extrinsic. Practical experience directs us to seek the relative importance of intrinsic and extrinsic factors whenever the causation of disease is studied, and we find that the two ingredients may be combined in every possible proportion. At one end of the series are diseases such as deaf mutism, transmitted as a simple recessive, in which the intrinsic element almost crowds out all other considerations. In the recessively sex-linked hemophilia, again the intrinsic element is so prominent that we see at once the mendelian significance of the process, although the bleeder may not be made known until the extrinsic factor, trauma, opens his blood vessels. The asthenic, dolichomorphic bodily configuration, which marks the phthisical habitus, is a familial character and therefore intrinsic, but it conditions infection by the tubercle bacillus in such a way as to give it serious or even lethal possibilities. When we consider syphilis, we find that the Treponema is no respecter of genetic constitution, yet sex and race may modify the character of the disease. -
Updates in Molecular Pathology of Central Nervous System Gliomas in Adults
UPDATES IN ONCOLOGY: PART 2 Updates in Molecular Pathology of Central Nervous System Gliomas in Adults MICHAEL PUNSONI, MD; JOHN E. DONAHUE, MD; HEINRICH D. ELINZANO, MD; TIMOTHY KINSELLA, MD 17 19 EN ABSTRACT Epidemiology Central nervous system (CNS) tumors are a heteroge- The incidence of CNS malignancies has been increasing. neous group of neoplasms divided into two broad cate- Most commonly, CNS tumors arise from glial cells, partic- gories, glial and non-glial. Non-glial tumors are derived ularly astrocytes and oligodendrocytes. Gliomas account from such diverse structures as the pineal gland, menin- for approximately 77% of primary malignant brain tumors ges, germ cells, and hematopoietic cells, as well as metas- (3). Most patients present between the fifth and seventh tases. Primary glial neoplasms, or those which originate decade of life. High-grade tumors are more common than from astrocytes, oligodendrocytes, or ependymal cells, low-grade and present a high risk of morbidity and mortal- include astrocytomas, oligodendrogliomas, ependymo- ity. The World Health Organization (WHO) in 2000 formu- mas, and mixed gliomas. Each entity has a unique mor- lated a classification system based on histologic findings phology and pattern of biologic behavior which portends that is used to stratify brain tumors into prognostic grades. a distinct prognosis and outcome. Individual outcomes High-grade gliomas (WHO grade III and IV) are most com- show some variability based on tumor location and age of monly seen in middle-aged to older adults, while grade II symptom onset; however, the underlying aggressiveness astrocytomas mainly affect younger adults. Management for of the tumor often dictates the time course of the disease. -
Circulating Tumor Cell As a Diagnostic Marker in Primary Lung Cancer
Published OnlineFirst November 3, 2009; DOI: 10.1158/1078-0432.CCR-09-1095 Published Online First on November 3, 2009 as 10.1158/1078-0432.CCR-09-1095 Imaging, Diagnosis, Prognosis Circulating Tumor Cell as a Diagnostic Marker in Primary Lung Cancer Fumihiro Tanaka,1 Kazue Yoneda,1 Nobuyuki Kondo,1 Masaki Hashimoto,1 Teruhisa Takuwa,1 Seiji Matsumoto,1 Yoshitomo Okumura,1 Shakibur Rahman,1 Noriaki Tsubota,2 Tohru Tsujimura,3 Kozo Kuribayashi,4 Kazuya Fukuoka,4 Takashi Nakano,4 and Seiki Hasegawa1 Abstract Purpose: To investigate the diagnostic performance of circulating tumor cells (CTC) in discrimination between primary lung cancer and nonmalignant diseases as well as in prediction of distant metastasis. Patients and Methods: We prospectively evaluated CTCs in 7.5-mL samples of periph- eral blood sampled from patients with a suspicion or a diagnosis of primary lung can- cer. A semiautomated system was used to capture CTCs with an antibody against epithelial cell adhesion molecule. Results: Of 150 eligible patients, 25 were finally diagnosed as having nonmalignant dis- ease, and 125 were diagnosed as having primary lung cancer with (n = 31) or without (n = 94) distant metastasis. CTCs were detected in 30.6% of lung cancer patients and in 12.0% of nonmalignant patients. CTC count was significantly higher in lung cancer pa- tients than in nonmalignant patients, but a receiver operating characteristic (ROC) curve analysis showed an insufficient capability of the CTC test in discrimination be- tween lung cancer and nonmalignant diseases with an area under ROC curve of 0.598 (95% confidence interval, 0.488-0.708; P = 0.122). -
797 Circulating Tumor DNA and Circulating Tumor Cells for Cancer
Medical Policy Circulating Tumor DNA and Circulating Tumor Cells for Cancer Management (Liquid Biopsy) Table of Contents • Policy: Commercial • Coding Information • Information Pertaining to All Policies • Policy: Medicare • Description • References • Authorization Information • Policy History • Endnotes Policy Number: 797 BCBSA Reference Number: 2.04.141 Related Policies Biomarkers for the Diagnosis and Cancer Risk Assessment of Prostate Cancer, #336 Policy1 Commercial Members: Managed Care (HMO and POS), PPO, and Indemnity Plasma-based comprehensive somatic genomic profiling testing (CGP) using Guardant360® for patients with Stage IIIB/IV non-small cell lung cancer (NSCLC) is considered MEDICALLY NECESSARY when the following criteria have been met: Diagnosis: • When tissue-based CGP is infeasible (i.e., quantity not sufficient for tissue-based CGP or invasive biopsy is medically contraindicated), AND • When prior results for ALL of the following tests are not available: o EGFR single nucleotide variants (SNVs) and insertions and deletions (indels) o ALK and ROS1 rearrangements o PDL1 expression. Progression: • Patients progressing on or after chemotherapy or immunotherapy who have never been tested for EGFR SNVs and indels, and ALK and ROS1 rearrangements, and for whom tissue-based CGP is infeasible (i.e., quantity not sufficient for tissue-based CGP), OR • For patients progressing on EGFR tyrosine kinase inhibitors (TKIs). If no genetic alteration is detected by Guardant360®, or if circulating tumor DNA (ctDNA) is insufficient/not detected, tissue-based genotyping should be considered. Other plasma-based CGP tests are considered INVESTIGATIONAL. CGP and the use of circulating tumor DNA is considered INVESTIGATIONAL for all other indications. 1 The use of circulating tumor cells is considered INVESTIGATIONAL for all indications. -
Connections Between Warburg's and Szentgyorgyi's Approach About The
Research iMedPub Journals Journal of Neoplasm 2017 http://www.imedpub.com/ ISSN 2576-3903 Vol.1 No.2:8 DOI: 10.217672576-3903.100008 Connections between Warburg’s and Szentgyorgyi’s Approach about the Causes of Cancer Szigeti GP1, Szasz O2 and Hegyi G3 1Institute of Human Physiology and Clinical Experimental Research, Semmelweis University, Hungary 2Department of Biotechnics, St. Istvan University, Hungary 3Department of Complementary and Alternative Medicine, University of Pecs, Hungary Corresponding author: Gabriella Hegyi, Department of Complementary and Alternative Medicine, University of Pecs, Hungary, Tel: +36 30 922-5347; E-mail: [email protected] Rec date: November 30, 2016; Acc date: December 26, 2016; Pub date: December 30, 2016 Citation: Szigeti GP, Szasz O, Hegyi G. Connections Between Warburg’s and Szentgyorgyi’s Approach About Causes of Cancer. J Neoplasm. 2017, 1: 2. to the environmental, diet and habit origins of malignant Abstract diseases [21-23]. Most widely, cancer is believed to be an abnormal tissue Numerous theories and hypotheses are published about triggered by a gene mutation. However, the proto-oncogene the causes of cancer and its hallmarks. Two remarkable and the oncogene appear not only in cancerous cases [24], but principles were established and debated for a long time. with pregnancy [25], with embryogenesis [26,27], with the The first is the Warburg-effect, which based on healing of wounds [28] and with the synthesis of growth mitochondrial dysfunction, connected to the intensive factors [29]. Oncogenes show a great variety of anti-apoptotic metabolic activity of the malignancy. The other is the functions with the cells taking part in the wound-healing [30]. -
Injury and Cancer
Case Western Reserve Law Review Volume 5 Issue 2 Article 4 1954 Injury and Cancer Lester Adelson Follow this and additional works at: https://scholarlycommons.law.case.edu/caselrev Part of the Law Commons Recommended Citation Lester Adelson, Injury and Cancer, 5 W. Rsrv. L. Rev. 150 (1954) Available at: https://scholarlycommons.law.case.edu/caselrev/vol5/iss2/4 This Article is brought to you for free and open access by the Student Journals at Case Western Reserve University School of Law Scholarly Commons. It has been accepted for inclusion in Case Western Reserve Law Review by an authorized administrator of Case Western Reserve University School of Law Scholarly Commons. [Winter Injury and Cancer by Lester Adelson, M.D. WITH LEGAL ANNOTATIONS BY OLIVER SCHROEDER, JR.* INTRODUCTION THE WORD "cancer" is one which is charged with emotion and fear, carrying with it implications of prolonged disability and slow, certain and painful death.' In considering and discussing the subject of cancer, diffi- culties frequently arise, not because not enough is known, but because so much is known that-is incorrect and untrue. A vast fund of misinformation and false information mis- leads the unwary stranger THE AUTHOR (A.B., 1935, Harvard Univer- and the uncritical observer. sity; M.D., 1939, Tufts College Medical School) is Chief Deputy Coroner and Patholo- Cancer is the second gist at the Coroner's Office, Cuyahoga County, leading cause of death, and Ohio, and Assistant Professor of Legal Medi- problems which arise in cine at the School of Medicine of Western Reserve University. connection with it are seen frequently. -
Hematopoietic and Lymphoid Neoplasm Coding Manual
Hematopoietic and Lymphoid Neoplasm Coding Manual Effective with Cases Diagnosed 1/1/2010 and Forward Published August 2021 Editors: Jennifer Ruhl, MSHCA, RHIT, CCS, CTR, NCI SEER Margaret (Peggy) Adamo, BS, AAS, RHIT, CTR, NCI SEER Lois Dickie, CTR, NCI SEER Serban Negoita, MD, PhD, CTR, NCI SEER Suggested citation: Ruhl J, Adamo M, Dickie L., Negoita, S. (August 2021). Hematopoietic and Lymphoid Neoplasm Coding Manual. National Cancer Institute, Bethesda, MD, 2021. Hematopoietic and Lymphoid Neoplasm Coding Manual 1 In Appreciation NCI SEER gratefully acknowledges the dedicated work of Drs, Charles Platz and Graca Dores since the inception of the Hematopoietic project. They continue to provide support. We deeply appreciate their willingness to serve as advisors for the rules within this manual. The quality of this Hematopoietic project is directly related to their commitment. NCI SEER would also like to acknowledge the following individuals who provided input on the manual and/or the database. Their contributions are greatly appreciated. • Carolyn Callaghan, CTR (SEER Seattle Registry) • Tiffany Janes, CTR (SEER Seattle Registry) We would also like to give a special thanks to the following individuals at Information Management Services, Inc. (IMS) who provide us with document support and web development. • Suzanne Adams, BS, CTR • Ginger Carter, BA • Sean Brennan, BS • Paul Stephenson, BS • Jacob Tomlinson, BS Hematopoietic and Lymphoid Neoplasm Coding Manual 2 Dedication The Hematopoietic and Lymphoid Neoplasm Coding Manual (Heme manual) and the companion Hematopoietic and Lymphoid Neoplasm Database (Heme DB) are dedicated to the hard-working cancer registrars across the world who meticulously identify, abstract, and code cancer data. -
The Interplay of Circulating Tumor DNA and Chromatin Modification
Zhang et al. Molecular Cancer (2019) 18:36 https://doi.org/10.1186/s12943-019-0989-z REVIEW Open Access The interplay of circulating tumor DNA and chromatin modification, therapeutic resistance, and metastasis Lei Zhang1,2,3†, Yiyi Liang1,2,3†, Shifu Li1,2,3†, Fanyuan Zeng1,2,3†, Yongan Meng1,2,3†, Ziwei Chen1,2,3, Shuang Liu3, Yongguang Tao1,2,3,4* and Fenglei Yu4* Abstract Peripheral circulating free DNA (cfDNA) is DNA that is detected in plasma or serum fluid with a cell-free status. For cancer patients, cfDNA not only originates from apoptotic cells but also from necrotic tumor cells and disseminated tumor cells that have escaped into the blood during epithelial-mesenchymal transition. Additionally, cfDNA derived from tumors, also known as circulating tumor DNA (ctDNA), carries tumor-associated genetic and epigenetic changes in cancer patients, which makes ctDNA a potential biomarker for the early diagnosis of tumors, monitory and therapeutic evaluations, and prognostic assessments, among others, for various kinds of cancer. Moreover, analyses of cfDNA chromatin modifications can reflect the heterogeneity of tumors and have potential for predicting tumor drug resistance. Keywords: ctDNA, Chromatin modification, Therapeutic resistance, Metastasis, Tumor heterogeneity Biological features of ctDNA enter the blood in single, double or triple forms, and Peripheral circulating free DNA is DNA that is detected thus most ctDNA shows significant fragmentary charac- in plasma or serum fluid with a cell-free status. It may teristics. Moreover, the half-life of ctDNA in the blood originate from apoptosis or necrosis. The amount of cir- circulation is less than 2 hours [3]. -
Circulating Cell-Free DNA in Hepatocellular Carcinoma: Current Insights and Outlook
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by edoc REVIEW published: 26 March 2018 doi: 10.3389/fmed.2018.00078 Circulating Cell-Free DNA in Hepatocellular Carcinoma: Current Insights and Outlook Charlotte K. Y. Ng1,2*, Giovan Giuseppe Di Costanzo3, Luigi M. Terracciano1 and Salvatore Piscuoglio1* 1 Institute of Pathology, University Hospital Basel, Basel, Switzerland, 2 Department of Biomedicine, Hepatology Laboratory, University of Basel, Basel, Switzerland, 3 Department of Transplantation – Liver Unit, Cardarelli Hospital, Naples, Italy Over the past decade, the advancements in massively parallel sequencing have pro- vided a new paradigm in biomedical research to uncover the genetic basis of human diseases. Integration of ‘omics information has begun transforming clinical management of cancer patients in terms of diagnostics and treatment options, giving rise to the era of precision medicine. Currently, nucleic acids for molecular profiling for patients diagnosed with hepatocellular carcinoma (HCC) are typically obtained from resected tumor mate- rials or transplanted neoplastic liver and occasionally from biopsies. Given the intrinsic risks associated with such invasive procedures, circulating cell-free DNA (cfDNA) has been proposed as an alternative source for tumor DNA. Circulating cfDNA is a type of Edited by: cell-free nucleic acid that derives from apoptotic, necrotic, as well as living eukaryotic Venancio Avancini Alves, University of São Paulo, Brazil cells. Importantly, the detection of abnormal forms of circulating cfDNA that originate Reviewed by: from cancer cells provides a new tool for cancer detection, disease monitoring, and Fernando Schmitt, molecular profiling. Currently, cfDNA is beginning to be adopted into clinical practice Universidade do Porto, Portugal Marco Volante, as a non-invasive tool to monitor disease by tracking the evolution of disease-specific Università degli Studi di Torino, Italy genetic alterations in several major cancer types. -
Highly Sensitive Detection of Sentinel Lymph Node Metastasis of Breast Cancer by Digital PCR for RASSF1A Methylation
2382 ONCOLOGY REPORTS 42: 2382-2389, 2019 Highly sensitive detection of sentinel lymph node metastasis of breast cancer by digital PCR for RASSF1A methylation MIZUHO ABE, NAOFUMI KAGARA, TOMOHIRO MIYAKE, TOMONORI TANEI, YASUTO NAOI, MASAFUMI SHIMODA, KENZO SHIMAZU, SEUNG JIN KIM and SHINZABURO NOGUCHI Department of Breast and Endocrine Surgery, Osaka University Graduate School of Medicine, Suita, Osaka 565‑0871, Japan Received June 4, 2019; Accepted September 19, 2019 DOI: 10.3892/or.2019.7363 Abstract. One-step nucleic acid amplification (OSNA) and is confirmed by postoperative pathological examination of targeting cytokeratin 19 (CK19) mRNA expression and permanent sections (3,4). One‑step nucleic acid amplification pathological examination are widely used for the intraop- (OSNA) can be used to detect SN metastasis through the erative diagnosis of sentinel node (SN) metastasis. The aim amplification of cytokeratin 19 (CK19) mRNA (which is of the present study was to develop a novel assay for detecting expressed in tumor cells, but not normal cells of LNs) with the SN metastasis by targeting Ras association domain-containing same accuracy as routine pathological examination (5). OSNA protein 1 (RASSF1A) methylation in tumor cells, and to is also used to determine total tumor load (TTL) in SNs as the compare its performance with OSNA. Using digital PCR with sum of CK19 mRNA copies, which is reportedly useful for methylation-specific restriction enzymes (RE-dMSP), our predicting non-SN metastatic status (6,7), as well as patient assay was able to detect ≥3 copies of methylated DNA per prognosis (8). well, and was ≥10 times more sensitive than real‑time PCR However, TTL determination by OSNA does not always with bisulfite modification. -
Circulating Tumor Cells
The ability to isolate and molecularly analyze circulating tumor cells is becoming a reality. The Closest Exit May Be Behind You. Photograph courtesy of Craig Damlo. www.soapboxrocket.com. Circulating Tumor Cells: A Window Into Tumor Development and Therapeutic Effectiveness Gisela Cáceres, PhD, John A. Puskas, PhD, and Anthony M. Magliocco, MD Background: Circulating tumor cells (CTCs) are an important diagnostic tool for understanding the meta- static process and the development of cancer. Methods: This review covers the background, relevance, and potential limitations of CTCs as a measurement of cancer progression and how information derived from CTCs may affect treatment efficacy. It also highlights the difficulties of characterizing these rare cells due to the limited cell surface molecules unique to CTCs and each particular type of cancer. Results: The analysis of cancer in real time, through the measure of the number of CTCs in a “liquid” biopsy specimen, gives us the ability to monitor the therapeutic efficacy of treatments and possibly the metastatic potential of a tumor. Conclusions: Through novel and innovative techniques yielding encouraging results, including microfluidic techniques, isolating and molecularly analyzing CTCs are becoming a reality. CTCs hold promise for under- standing how tumors work and potentially aiding in their demise. Introduction States is attributed to cancer.2 The search for biomark- Cancer is a comprehensive term that includes a group ers that allow early detection and may therefore affect of diseases characterized by host cells growing with- the outcome of the disease is critical. The ability of out control. It has a multifactorial origin and, even cancer cells to spread in the body, producing metas- though many cancers are directly associated with risk tasis, is one of the most relevant characteristics of the factors in modern life, cancer is an ancient disease, disease and the cause of most cancer deaths.