Life at High Temperatures

Total Page:16

File Type:pdf, Size:1020Kb

Life at High Temperatures GENERAL I ARTICLE Life at High Temperatures Ramesh Maheshwari Amazing microorganisms thrive at high temperatures in­ compatible with the familiar forms of life. A few species Ramesh Maheshwari is at from hot springs or from the vicinity of hydrothermal vents the Department of Biochemistry, lISe, at the floor of the oceans are the basis of a multimillion Bangalore. His research dollar industry. An entirely new form ofanimal life has been interests have included discovered around the volcanic eruptions from the sea thermophilic organisms. floor. This animal life thrives in the permanently dark environment only because it harbors symbiotic bacteria that synthesize food molecules from inorganic chemicals in the emissions. Thermophilic microorganisms are involved in composting and humification in terrestrial habitats. Introduction For most terrestrial organisms, the optimum temperature of growth is around 2S-30°C. Among the few exceptions in the higher forms of life is the Pompeii worm which survives at SO°C or more in the vicinity of geothermal vents in the deep sea and the plant Tidestromia oblongifolia (Amaranthaceae) found in Death Valley in California, where the hottest temperature on earth ever recorded during 43 consecutive days in 1917 was >48 °C (Guinness Book of W orId Records, 1999). Temperature stress is accompanied by water stress and since all organisms need liquid water, life at high temperatures is found only in the terrestrial hot springs or at the bottom of ocean in the vicinity of volcanic eruptions. This life is comprised of unicellular bacteria or organ­ isms resembling bacteria. Since 1960s, new discoveries keep pushing the upper tempera­ ture limit of life higher and higher (Figure 1). Because of the lability of crucial biomolecules, for example adenosine triphos­ phate, ATP - an energy-rich molecule which is the principal Keywords donor of energy in biological systems, and of nicotinamide Temperature, life, thermo­ adenine dinucleotide phosphate, NAD(P)H - a molecule which philes, extremophiles. -RE-S-O-N-A-N-C-E--I-~--Pt-em-~--r--20-0-5----------~-----------------------------~- GENERAL I ARTICLE -150- +--Predicted upper limit for life -140- -130- -120- ...-Upper temp limit for life, 2000 -110- +--upper limit for life, 1990 -100- . +--Upper limit for life, 1970 90- +-- Upper limit for life, 1960 +--Highest temp. Death Valley, California,JuIy 10, 1913;; ~AI Azizia, Libya, September 13,1922 ........... Protoplasmic streaming ceases after 5 min heating in most e Highest temp., Bangalore, 22 May 1931--+ 0- ~ Upper limit for aquatic vertebrates Annual average, Dalol, Denakil Depression, Ethiopia {30-} ~ - +-Topt for most animals, plants and microorganisms Average annual temp. in tropics -20 Average temp. of earth--+ 10-+--T min for E. coli and most plants Figure 1. Thermometer of functions as a coenzyme in several biochemical reactions in the life. The upper temperature cell, the upper temperature limit of life is predicted to be around limit of life has been raised 150°C, prompting researchers to search for the champion higher and higher. Modified from R Maheshwari, 2005, organism. Fungi: Experimental Meth­ Organisms that have an optimum temperature (T )of 45-50 °C ods in Biology. CRC Press, opt Boca Raton, USA. are called thermophiles. The T opt is the temperature at which growth rate is fastest. The so-called 'hyperthermophiles' have a T opt of 90°C or even higher. Thermophiles and hyperthermo­ philes have not only an elevated T max' hut also an elevated minimum temperature of growth (Tmin)' However, the tempera­ ture range in which these organisms grow is similar to that of the mesophiles which grow at 'normal' temperatures. This means that the overall temperature range at which any organism can grow is rather narrow, approximately 30°C. The T opt is always closer to T max than it is to T min' The most heat-enduring are the single-celled organisms which superficially resemble bacteria, 2-4---------------------------------~-----------R-ES-O-N--A-N-C-E--I-s-e-Pt-e-m-b-e-r--2-0-0-S GENERAL I ARTICLE but are now classified in the domain of life called Archaea (previously Archaebacteria). The differences between Archaea and Bacteria are in the chemistry of their membrane lipids, structure of cell walls, structure of ribosomes and growth sensi­ tivity to antibiotics. Lethal Effect of Heat Why is prolonged exposure to temperatures >45 °C generally lethal? The integrity of the cell and of the cellular compartments known as organelles depends on the structure of membranes which is a lipid-based sheet. Macromolecular structures depend on the three-dimensional structure of the molecules of which they are composed of. For example, a protein in the cell which performs the task of catalysis of metabolic reactions or the transport of molecules has folded polypeptide chains called the alpha-helix. The alpha-helix is held in the helical configuration by hydrogen bonds between the CO groups and the NH groups four amino acids apart. DNA, the carrier of genetic information, has the form of a double helix that is held together by hydrogen bonds between the base pairs. Nucleic acid and protein interact to form nucleosomes which are joined into a flexible chain. Hydrogen bond is a weak bond, broken by heat. The three­ dimensional structure of macromolecules is therefore altered by high temperatures resulting in the loss of functional properties. We may ask why a macromolecular structure is not based on strong covalent bonds. The answer is that cellular function is dependent on the flexibility of a macromolecule. For example, an enzyme (protein) molecule must be flexible for folding into a shape into which its substrate can fit in precise orientation. Denaturation of proteins and melting of the membranes are two major reasons why 45°C is a sort of temperature limit for the majority of living beings. Life in Boiling Water It was a great surprise to discover that a variety of single-celled organisms, with diameter close to or less than a micron, actually -RE-S-O-N-A-N-C-E--I-~--Pt-em-oo--r--20-0-5----------~~-----------------------------~- GENERAL I ARTICLE Figure 2. A boiling pool in Yelllowstone National Park, USA. From [1J, with permis­ sion. require temperatures above 40-45 °C for growth. During 1965 to 1975, the American microbiologist Thomas Brock and his asso­ ciates [1] discovered microbial species thriving in hot springs in the Yellowstone National Park, USA (Figure 2). To determine if the bacteria were actually growing in hot springs or had been disseminated from elsewhere, the investigators immersed mi­ croscope slides in the boiling pool; exposing one side of the slide to germicidal ultraviolet radiation at regular intervals. The rationale being that any organism that had become attached to the slide would be killed and not be able to reproduce. The colony growth on the non-irradiated, but not on the control (irradiated) side (Figure 3), proved that microbial growth was not only occurring at temperatures close to 90°C, it was occurring at rapid rates. The generation time in different hot springs varies from 2 to 6 hours. In Yellowstone, water boils at 92.5°C. This work demonstrated that life can exist at close to the boiling point of water. An Important Generalization in Biology In India, hot springs (·agnikunds·) are found in Brock investigated several types of thermal habitats. One of Kashmir, Himachal Pradesh, these was the self-heating piles of coal-waste in the vicinity of Uttaranchal, GUjarat, w.est Ben­ coal mines. Although the bulk of coal is removed, the refuse gal and in other places, but their always contains coal fragments and other organic material. Brock microbial diversity has not been discovered that this is the habitat of Thermoplasma acidophilum. studied. -26-------------------------------~~------------------------------ RESONANCE I September 2005 GENERAL I ARTICLE So far, the coal-refuse pile is the only habitat where this organ­ Figure 3. (left) Bacterial ism has been found. Thermoplasma has no cell wall, yet can grow growth on microscope slide at temperatures of 61°C, and at a pH close to 1 (the acidity of immersed in a boiling pool. (right) No growth occurred O.1M hydrochloric acid). Its discovery refuted the belief that on the side of the slide cell-wall provides the chief protection against heat. These dis­ which was exposed to ger­ coveries led to an important generalization in biology: No mat­ micidal UV light at intervals. ter how harsh the environment, if there is liquid water, there is From {1J, with permission. life. Or to put it differently, there is no life without liquid water. Amazing Creatures in the Vicinity of Deep-Sea Hydrother­ mal VentslBlack Smokers Although man had conquered the highest mountain peak, the outer space and the moon, the greatest depths of the oceans had remained impenetrable because of the enormous hydrostatic pressure due to the column of water above. Only USA, France and Japan have built submersibles capable of descending to the ocean floor. It carries a pilot and two scientists, and a single dive takes nearly 4 hours. The submersible is fitted with strobe lights, portholes, and robotic arms for collecting samples. Finally, in 1977, deep sea diving to depths of some 1.6 miles (or 2.5 km) at locations along the thick line shown in Figure 4 could be achieved. The line represents mid-oceanic ridges where tectonic plates that form earth's crust separate, creating fissures on the sea floor. Sea water penetrates into the fissures and interacts with the hot, -RE-S-O-N-A-N-C-E--I-~--p~-m-~--r--20-0-5----------~------------------------------u- GENERAL I ARTICLE Figure 4. The line repre­ volcanic crust. The thermally-expanded, mineral-enriched wa­ sents mid-oceanic ridges ter with temperature of 350°C or more rises up and exits from where gigantic plates that chimney-like structures on the ocean floor.
Recommended publications
  • A Virus That Infects a Hyperthermophile Encapsidates A-Form
    RESEARCH | REPORTS we observe sets of regulatory sites that exhibit Illumina, Inc. One or more embodiments of one or more patents SUPPLEMENTARY MATERIALS patterns of coordinated regulation (e.g., LYN, and patent applications filed by Illumina may encompass the www.sciencemag.org/content/348/6237/910/suppl/DC1 encoding a tyrosine kinase involved in B cell methods, reagents, and data disclosed in this manuscript. All Materials and Methods methods for making the transposase complexes are described in signaling) (Fig. 4B), although reproducibility of Figs. S1 to S22 (18); however, Illumina will provide transposase complexes in Tables S1 and S2 these patterns across biological replicates was response to reasonable requests from the scientific community References (24–39) modest (fig. S22). Given the sparsity of the data, subject to a material transfer agreement. Some work in this study identifying pairs of coaccessible DNA elements is related to technology described in patent applications 19 March 2015; accepted 24 April 2015 WO2014142850, 2014/0194324, 2010/0120098, 2011/0287435, Published online 7 May 2015; within individual loci is statistically challenging 2013/0196860, and 2012/0208705. 10.1126/science.aab1601 and merits further development. We report chromatin accessibility maps for >15,000 single cells. Our combinatorial cellular indexing scheme could feasibly be scaled to col- VIROLOGY lect data from ~17,280 cells per experiment by using 384-by-384 barcoding and sorting 100 nu- clei per well (assuming similar cell recovery and A virus that infects a collision rates) (fig. S1) (19). Particularly as large- scale efforts to build a human cell atlas are con- templated (23), it is worth noting that because hyperthermophile encapsidates DNA is at uniform copy number, single-cell chro- matin accessibility mapping may require far fewer A-form DNA reads per single cell to define cell types, relative to single-cell RNA-seq.
    [Show full text]
  • Extremely Thermophilic Microorganisms As Metabolic Engineering Platforms for Production of Fuels and Industrial Chemicals
    REVIEW published: 05 November 2015 doi: 10.3389/fmicb.2015.01209 Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals Benjamin M. Zeldes 1, Matthew W. Keller 2, Andrew J. Loder 1, Christopher T. Straub 1, Michael W. W. Adams 2 and Robert M. Kelly 1* 1 Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, USA, 2 Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA Enzymes from extremely thermophilic microorganisms have been of technological interest for some time because of their ability to catalyze reactions of industrial significance at elevated temperatures. Thermophilic enzymes are now routinely produced in recombinant mesophilic hosts for use as discrete biocatalysts. Genome and metagenome sequence data for extreme thermophiles provide useful information for putative biocatalysts for a wide range of biotransformations, albeit involving at most a few enzymatic steps. However, in the past several years, unprecedented progress has been made in establishing molecular genetics tools for extreme thermophiles to the point Edited by: that the use of these microorganisms as metabolic engineering platforms has become Bettina Siebers, University of Duisburg-Essen, possible. While in its early days, complex metabolic pathways have been altered or Germany engineered into recombinant extreme thermophiles, such that the production of fuels and Reviewed by: chemicals at elevated temperatures has become possible. Not only does this expand the Haruyuki Atomi, thermal range for industrial biotechnology, it also potentially provides biodiverse options Kyoto University, Japan Phillip Craig Wright, for specific biotransformations unique to these microorganisms. The list of extreme University of Sheffield, UK thermophiles growing optimally between 70 and 100◦C with genetic toolkits currently *Correspondence: available includes archaea and bacteria, aerobes and anaerobes, coming from genera Robert M.
    [Show full text]
  • Do Ultrastable Proteins from Hyperthermophiles Have High Or Low Conformational Rigidity?
    Commentary Do ultrastable proteins from hyperthermophiles have high or low conformational rigidity? Rainer Jaenicke* Institute of Biophysics and Physical Biochemistry, University of Regensburg, D-93040 Regensburg, Germany ife on earth has an unbelievable adaptive parisons of their protein inventories with Lcapacity. Except for centers of volcanic those of suitable mesophilic counterparts, a activity, the entire surface of our planet is a wealth of data has been accumulated that biosphere. In this context, the most surpris- indicated that stabilization involves all levels ing discovery in our lifetime was the expan- of the hierarchy of protein structure, i.e., sion from the anthropocentrically defined secondary, supersecondary, tertiary, and ‘‘normal temperature’’ of mesophiles quaternary interactions. The common con- (Ͻ40°C) to the optimum temperature range clusion from model studies was that the of hyperthermophiles around and above the stability of proteins from extremophiles is boiling point of water. That in this class of optimized to maintain corresponding func- microorganisms high temperature is re- tional states under a given set of environ- quired for growth rather than tolerated im- mental conditions. For the standard state at plies that the whole repertoire of their bi- 25°C, enhanced thermal stability of hyper- omolecules must be sufficiently stable to thermophile proteins would then be the allow the cellular microcosm to work. The result of enhanced conformational rigidity Fig. 1. Three-dimensional structure of rubre- strategies nature has used to stabilize the in their folded native state (5). doxin from P. furiosus. Numbered residues mark inventory of the cell, especially proteins, Evidence from recent amide hydrogen the most slowly exchanging hydrogens, close to under extreme conditions are still enig- exchange experiments reported in this is- the two cysteine knuckles (7–9).
    [Show full text]
  • Bhattacharya.1999.Thermophiles.Pdf
    THE PHYLOGENY OF THERMOPHILES AND HYPERTHERMOPHILES AND THE THREE DOMAINS OF LIFE The Phylogeny of Thermophiles DEBASHISH BHATTACHARYA University of Iowa Department of Biological Sciences Biology Building, Iowa City, Iowa 52242-1324 United States THOMAS FRIEDL Department of Biology, General Botany University of Kaiserslautern P.O. Box 3049, D-67653 Kaiserslautern, Germany HEIKO SCHMIDT Deutsches Krebsforschungszentrum Theoretische Bioinformatik Im Neuenheimer Feld 280 , D-69120 Heidelberg, Germany 1. Introduction The nature of the first cells and the environment in which they lived are two of the most interesting problems in evolutionary biology. All living things are descendents of these primordial cells and are divided into three fundamental lineages or domains, Archaea (formerly known as Archaebacteria), Bacteria (formerly known as Eubacteria), and the Eucarya (formerly known as Eukaryotes, Woese et al. 1990). The Archaea and Bacteria are prokaryotic domains whereas the Eucarya includes all other living things that have a nucleus (i.e., the genetic material is separated from the cytoplasm by a nuclear envelope). The observation of the three primary domains, first made on the basis of small subunit (i.e., 16S, 18S) ribosomal DNA (rDNA) sequence comparisons (Woese 1987), has created a framework with which the nature of the last common ancestor (LCA) can be addressed. In this review we present phylogenies of the prokaryotic domains to understand the origin and distribution of the thermophiles (organisms able to grow in temperatures > 45°C) and the hyperthermophiles (organisms able to grow in temperatures > 80°C). Hyperthermophiles are limited to the Archaea and Bacteria. In addition, we inspect the distribution of extremophiles within the cyanobacteria.
    [Show full text]
  • Counts Metabolic Yr10.Pdf
    Advanced Review Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms James A. Counts,1 Benjamin M. Zeldes,1 Laura L. Lee,1 Christopher T. Straub,1 Michael W.W. Adams2 and Robert M. Kelly1* The current upper thermal limit for life as we know it is approximately 120C. Microorganisms that grow optimally at temperatures of 75C and above are usu- ally referred to as ‘extreme thermophiles’ and include both bacteria and archaea. For over a century, there has been great scientific curiosity in the basic tenets that support life in thermal biotopes on earth and potentially on other solar bodies. Extreme thermophiles can be aerobes, anaerobes, autotrophs, hetero- trophs, or chemolithotrophs, and are found in diverse environments including shallow marine fissures, deep sea hydrothermal vents, terrestrial hot springs— basically, anywhere there is hot water. Initial efforts to study extreme thermo- philes faced challenges with their isolation from difficult to access locales, pro- blems with their cultivation in laboratories, and lack of molecular tools. Fortunately, because of their relatively small genomes, many extreme thermo- philes were among the first organisms to be sequenced, thereby opening up the application of systems biology-based methods to probe their unique physiologi- cal, metabolic and biotechnological features. The bacterial genera Caldicellulosir- uptor, Thermotoga and Thermus, and the archaea belonging to the orders Thermococcales and Sulfolobales, are among the most studied extreme thermo- philes to date. The recent emergence of genetic tools for many of these organ- isms provides the opportunity to move beyond basic discovery and manipulation to biotechnologically relevant applications of metabolic engineering.
    [Show full text]
  • Life at High Temperatures Biotechnology in Yellowstone
    Life at High Temperatures by Thomas D. Brock Biotechnology in Yellowstone © 1994 Yellowstone Association for Natural Science, History & Education, Inc. Yellowstone National Park, Wyoming 82190. The thermophilic bacteria that live in the Yellowstone hot springs have been the foundation of impressive developments in medicine and biotechnology. The unique thermostable enzymes of these bacteria are finding wide industrial and medical use, and have become the basis of a multimillion dollar industry! When researchers began to study the biology of Yellowstone hot springs in the 1960s, the presence of these hyperthermophilic bacteria was not suspected. The upper temperature limit for life was thought to be around 73 degrees C (163 degrees F), which was actually the limit for photosynthetic organisms such as cyanobacteria. The preferred temperature for thermophilic bacteria was considered even lower, around 55 degrees C (131 degrees F). Because of the known effects of heat on biological structures such as proteins and DNA, it was thought that life at higher temperatures would be impossible. In fact, biochemists have known for over 100 years that enzymes (key cellular proteins) are destroyed by boiling. However, field observations in Yellowstone showed that in certain springs bacteria existed at much higher temperatures. Although these springs were rather small and not especially conspicuous among the impressive geysers and giant hot pools of the Yellowstone thermal basins, they were impressive microbial culture systems and turned out to be of great scientific and intellectual interest. It turns out that the enzymes of Yellowstone thermophiles are very tolerant of heat and are active even at boiling water temperatures.
    [Show full text]
  • ATP Synthases from Archaea: the Beauty of a Molecular Motor
    Biochimica et Biophysica Acta 1837 (2014) 940–952 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbabio Review ATP synthases from archaea: The beauty of a molecular motor Gerhard Grüber a,⁎, Malathy Sony Subramanian Manimekalai a, Florian Mayer b, Volker Müller b,⁎ a School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Republic of Singapore b Molecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University Frankfurt/Main, Max-von-Laue-Str. 9, 60438 Frankfurt, Germany article info abstract Article history: Archaea live under different environmental conditions, such as high salinity, extreme pHs and cold or hot tem- Received 13 November 2013 peratures. How energy is conserved under such harsh environmental conditions is a major question in cellular Received in revised form 7 March 2014 bioenergetics of archaea. The key enzymes in energy conservation are the archaeal A1AO ATP synthases, a class Accepted 11 March 2014 of ATP synthases distinct from the F F ATP synthase ATP synthase found in bacteria, mitochondria and chloro- Available online 17 March 2014 1 O plasts and the V1VO ATPases of eukaryotes. A1AO ATP synthases have distinct structural features such as a collar- Keywords: like structure, an extended central stalk, and two peripheral stalks possibly stabilizing the A1AO ATP synthase dur- ATPase ing rotation in ATP synthesis/hydrolysis at high temperatures as well as to provide the storage of transient elastic Na+ bioenergetics energy during ion-pumping and ATP synthesis/-hydrolysis. High resolution structures of individual subunits and Energy conservation subcomplexes have been obtained in recent years that shed new light on the function and mechanism of this Methanogenesis unique class of ATP synthases.
    [Show full text]
  • High-Level Expression, Purification, and Thermus Aquatlcus DNA
    Downloaded from genome.cshlp.org on September 29, 2021 - Published by Cold Spring Harbor Laboratory Press High-level Expression, Purification, and Enzymatic Characterization of Full-length Thermus aquatlcus DNA Polymerase and a Truncated Form Deficient in 5' to 3' Exonuclease Activity Frances C. Lawyer, 1 Susanne Stoffel, 1 Randall K. Saiki, 2 Sheng-Yung Chang, 3 Phoebe A. Landre, ~ Richard D. Abrarnson, 1 and David H. Gelfand 1 1Program in Core Research and Departments of 2Human Genetics and 3Infectious Disease, Roche Molecular Systems, Alameda, California 94501 The Thermus aquaticus DNA poly- life of 9 min at 97.5~ The Stoffel I in the native host is quite low (0.01- merase I (Taq Pol I) gene was cloned fragment has a half-life of 21 min at 0.02% of total protein). The cloning and into a plasmid expression vector that 97.5~ Taq Pol I contains a polymer- expression of full-length 94-kD Taq Pol I utilizes the strong bacteriophage ization-dependent 5' to 3' exonu- in E. coli under control of the E. coli lac PL promoter. A truncated form of Taq clease activity whereas the Stoffel promoter r or the tac promoter (7~ has Pol I was also constructed. The two fragment, deleted for the 5' to 3' ex- been reported. Because polymerase constructs made it possible to com- onuclease domain, does not possess yields in these constructs were low pare the full-length 832-amino-acid that activity. A comparison is made (-0.01% of total protein in our initial Taq Pol I and a deletion derivative among thermostable DNA poly- construct; see ref.
    [Show full text]
  • Extremophiles
    Extremophiles These microbes thrive under conditions that would kill other creatures. The molecules that enable extremophiles to prosper are becoming useful to industry by Michael T. Madigan and Barry L. Marrs DEEP-SEA VENT HEAT-LOVING MICROBES (THERMOPHILES AND HYPERTHERMOPHILES) SEA ICE COLD-LOVING MICROBES (PSYCHROPHILES) Methanopyrus kandleri Polaromonas vacuolata thereby increasing efficiency and reduc- magine diving into a refreshingly ing costs. They can also form the basis of cool swimming pool. Now, think entirely new enzyme-based processes. I instead of plowing into water that tially serve in an array of applications. Perhaps 20 research groups in the U.S., is boiling or near freezing. Or consider Of particular interest are the enzymes Japan, Germany and elsewhere are now jumping into vinegar, household am- (biological catalysts) that help extremo- actively searching for extremophiles and monia or concentrated brine. The leap philes to function in brutal circumstanc- their enzymes. Although only a few ex- would be disastrous for a person. Yet es. Like synthetic catalysts, enzymes, tremozymes have made their way into many microorganisms make their home which are proteins, speed up chemical use thus far, others are sure to follow. As in such forbidding environments. These reactions without being altered them- is true of standard enzymes, transform- microbes are called extremophiles be- selves. Last year the biomedical field and ing a newly isolated extremozyme into cause they thrive under conditions that, other industries worldwide spent more a viable product for industry can take from the human vantage, are clearly ex- than $2.5 billion on enzymes for appli- several years.
    [Show full text]
  • Ionizing Radiation Resistance in Deinococcus Radiodurans
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CSCanada.net: E-Journals (Canadian Academy of Oriental and Occidental Culture,... ISSN 1715-7862 [PRINT] Advances in Natural Science ISSN 1715-7870 [ONLINE] Vol. 7, No. 2, 2014, pp. 6-14 www.cscanada.net DOI: 10.3968/5058 www.cscanada.org Ionizing Radiation Resistance in Deinococcus Radiodurans LI Wei[a]; MA Yun[a]; XIAO Fangzhu[a]; HE Shuya[a],* [a]Institute of Biochemistry and Molecular Biology, University of South Treatment of D. radiodurans with an acute dose of 5,000 China, Hengyang, China. Gy of ionizing radiation with almost no loss of viability, *Corresponding author. and an acute dose of 15,000 Gy with 37% viability (Daly, Supported by the National Natural Science Foundation of China 2009; Ito, Watanabe, Takeshia, & Iizuka, 1983; Moseley (81272993). & Mattingly, 1971). In contrast, 5 Gy of ionizing radiation can kill a human, 200-800 Gy of ionizing radiation will Received 12 March 2014; accepted 2 June 2014 Published online 26 June 2014 kill E. coli, and more than 4,000 Gy of ionizing radiation will kill the radiation-resistant tardigrade. D. radiodurans can survive 5,000 to 30,000 Gy of ionizing radiation, Abstract which breaks its genome into hundreds of fragments (Daly Deinococcus radiodurans is unmatched among all known & Minton, 1995; Minton, 1994; Slade & Radman, 2011). species in its ability to resist ionizing radiation and other Surprisingly, the genome is reassembled accurately before DNA-damaging factors. It is considered a model organism beginning of the next cycle of cell division.
    [Show full text]
  • Life in Extreme Environments
    insight review articles Life in extreme environments Lynn J. Rothschild & Rocco L. Mancinelli NASA Ames Research Center, Moffett Field, California 94035-1000, USA (e-mail: [email protected]; [email protected]) Each recent report of liquid water existing elsewhere in the Solar System has reverberated through the international press and excited the imagination of humankind. Why? Because in the past few decades we have come to realize that where there is liquid water on Earth, virtually no matter what the physical conditions, there is life. What we previously thought of as insurmountable physical and chemical barriers to life, we now see as yet another niche harbouring ‘extremophiles’. This realization, coupled with new data on the survival of microbes in the space environment and modelling of the potential for transfer of life between celestial bodies, suggests that life could be more common than previously thought. Here we examine critically what it means to be an extremophile, and the implications of this for evolution, biotechnology and especially the search for life in the Universe. ormal is passé; extreme is chic. While thriving in biological extremes (for example, nutritional Aristotle cautioned “everything in extremes, and extremes of population density, parasites, moderation”, the Romans, known for their prey, and so on). excesses, coined the word ‘extremus’, the ‘Extremophile’ conjures up images of prokaryotes, yet the superlative of exter (‘being on the outside’). taxonomic range spans all three domains. Although all NBy the fifteenth century ‘extreme’ had arrived, via Middle hyperthermophiles are members of the Archaea and French, to English. At the dawning of the twenty-first Bacteria, eukaryotes are common among the psychrophiles, century we know that the Solar System, and even Earth, acidophiles, alkaliphiles, piezophiles, xerophiles and contain environmental extremes unimaginable to the halophiles (which respectively thrive at low temperatures, low ‘ancients’ of the nineteenth century.
    [Show full text]
  • 4 Metabolic and Taxonomic Diversification in Continental Magmatic Hydrothermal Systems
    Maximiliano J. Amenabar, Matthew R. Urschel, and Eric S. Boyd 4 Metabolic and taxonomic diversification in continental magmatic hydrothermal systems 4.1 Introduction Hydrothermal systems integrate geological processes from the deep crust to the Earth’s surface yielding an extensive array of spring types with an extraordinary diversity of geochemical compositions. Such geochemical diversity selects for unique metabolic properties expressed through novel enzymes and functional characteristics that are tailored to the specific conditions of their local environment. This dynamic interaction between geochemical variation and biology has played out over evolu- tionary time to engender tightly coupled and efficient biogeochemical cycles. The timescales by which these evolutionary events took place, however, are typically in- accessible for direct observation. This inaccessibility impedes experimentation aimed at understanding the causative principles of linked biological and geological change unless alternative approaches are used. A successful approach that is commonly used in geological studies involves comparative analysis of spatial variations to test ideas about temporal changes that occur over inaccessible (i.e. geological) timescales. The same approach can be used to examine the links between biology and environment with the aim of reconstructing the sequence of evolutionary events that resulted in the diversity of organisms that inhabit modern day hydrothermal environments and the mechanisms by which this sequence of events occurred. By combining molecu- lar biological and geochemical analyses with robust phylogenetic frameworks using approaches commonly referred to as phylogenetic ecology [1, 2], it is now possible to take advantage of variation within the present – the distribution of biodiversity and metabolic strategies across geochemical gradients – to recognize the extent of diversity and the reasons that it exists.
    [Show full text]