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CALIFORNIA's NORTH COAST: a Literary Watershed: Charting the Publications of the Region's Small Presses and Regional Authors
CALIFORNIA'S NORTH COAST: A Literary Watershed: Charting the Publications of the Region's Small Presses and Regional Authors. A Geographically Arranged Bibliography focused on the Regional Small Presses and Local Authors of the North Coast of California. First Edition, 2010. John Sherlock Rare Books and Special Collections Librarian University of California, Davis. 1 Table of Contents I. NORTH COAST PRESSES. pp. 3 - 90 DEL NORTE COUNTY. CITIES: Crescent City. HUMBOLDT COUNTY. CITIES: Arcata, Bayside, Blue Lake, Carlotta, Cutten, Eureka, Fortuna, Garberville Hoopa, Hydesville, Korbel, McKinleyville, Miranda, Myers Flat., Orick, Petrolia, Redway, Trinidad, Whitethorn. TRINITY COUNTY CITIES: Junction City, Weaverville LAKE COUNTY CITIES: Clearlake, Clearlake Park, Cobb, Kelseyville, Lakeport, Lower Lake, Middleton, Upper Lake, Wilbur Springs MENDOCINO COUNTY CITIES: Albion, Boonville, Calpella, Caspar, Comptche, Covelo, Elk, Fort Bragg, Gualala, Little River, Mendocino, Navarro, Philo, Point Arena, Talmage, Ukiah, Westport, Willits SONOMA COUNTY. CITIES: Bodega Bay, Boyes Hot Springs, Cazadero, Cloverdale, Cotati, Forestville Geyserville, Glen Ellen, Graton, Guerneville, Healdsburg, Kenwood, Korbel, Monte Rio, Penngrove, Petaluma, Rohnert Part, Santa Rosa, Sebastopol, Sonoma Vineburg NAPA COUNTY CITIES: Angwin, Calistoga, Deer Park, Rutherford, St. Helena, Yountville MARIN COUNTY. CITIES: Belvedere, Bolinas, Corte Madera, Fairfax, Greenbrae, Inverness, Kentfield, Larkspur, Marin City, Mill Valley, Novato, Point Reyes, Point Reyes Station, Ross, San Anselmo, San Geronimo, San Quentin, San Rafael, Sausalito, Stinson Beach, Tiburon, Tomales, Woodacre II. NORTH COAST AUTHORS. pp. 91 - 120 -- Alphabetically Arranged 2 I. NORTH COAST PRESSES DEL NORTE COUNTY. CRESCENT CITY. ARTS-IN-CORRECTIONS PROGRAM (Crescent City). The Brief Pelican: Anthology of Prison Writing, 1993. 1992 Pelikanesis: Creative Writing Anthology, 1994. 1994 Virtual Pelican: anthology of writing by inmates from Pelican Bay State Prison. -
Life at Low Water Activity
Published online 12 July 2004 Life at low water activity W. D. Grant Department of Infection, Immunity and Inflammation, University of Leicester, Maurice Shock Building, University Road, Leicester LE1 9HN, UK ([email protected]) Two major types of environment provide habitats for the most xerophilic organisms known: foods pre- served by some form of dehydration or enhanced sugar levels, and hypersaline sites where water availability is limited by a high concentration of salts (usually NaCl). These environments are essentially microbial habitats, with high-sugar foods being dominated by xerophilic (sometimes called osmophilic) filamentous fungi and yeasts, some of which are capable of growth at a water activity (aw) of 0.61, the lowest aw value for growth recorded to date. By contrast, high-salt environments are almost exclusively populated by prokaryotes, notably the haloarchaea, capable of growing in saturated NaCl (aw 0.75). Different strategies are employed for combating the osmotic stress imposed by high levels of solutes in the environment. Eukaryotes and most prokaryotes synthesize or accumulate organic so-called ‘compatible solutes’ (osmolytes) that have counterbalancing osmotic potential. A restricted range of bacteria and the haloar- chaea counterbalance osmotic stress imposed by NaCl by accumulating equivalent amounts of KCl. Haloarchaea become entrapped and survive for long periods inside halite (NaCl) crystals. They are also found in ancient subterranean halite (NaCl) deposits, leading to speculation about survival over geological time periods. Keywords: xerophiles; halophiles; haloarchaea; hypersaline lakes; osmoadaptation; microbial longevity 1. INTRODUCTION aw = P/P0 = n1/n1 ϩ n2, There are two major types of environment in which water where n is moles of solvent (water); n is moles of solute; availability can become limiting for an organism. -
Marine Extremophiles: a Source of Hydrolases for Biotechnological Applications
Mar. Drugs 2015, 13, 1925-1965; doi:10.3390/md13041925 OPEN ACCESS marine drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Marine Extremophiles: A Source of Hydrolases for Biotechnological Applications Gabriel Zamith Leal Dalmaso 1,2, Davis Ferreira 3 and Alane Beatriz Vermelho 1,* 1 BIOINOVAR—Biotechnology laboratories: Biocatalysis, Bioproducts and Bioenergy, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] 2 Graduate Program in Plant Biotechnology, Health and Science Centre, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil 3 BIOINOVAR—Biotechnology Laboratories: Virus-Cell Interaction, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +55-(21)-3936-6743; Fax: +55-(21)-2560-8344. Academic Editor: Kirk Gustafson Received: 1 December 2014 / Accepted: 25 March 2015 / Published: 3 April 2015 Abstract: The marine environment covers almost three quarters of the planet and is where evolution took its first steps. Extremophile microorganisms are found in several extreme marine environments, such as hydrothermal vents, hot springs, salty lakes and deep-sea floors. The ability of these microorganisms to support extremes of temperature, salinity and pressure demonstrates their great potential for biotechnological processes. Hydrolases including amylases, cellulases, peptidases and lipases from hyperthermophiles, psychrophiles, halophiles and piezophiles have been investigated for these reasons. -
An Unknown Oxidative Metabolism Substantially Contributes to Soil CO2
EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Open Access Biogeosciences, 10, 1155–1167, 2013 Open Access www.biogeosciences.net/10/1155/2013/ Biogeosciences doi:10.5194/bg-10-1155-2013 Biogeosciences Discussions © Author(s) 2013. CC Attribution 3.0 License. Open Access Open Access Climate Climate of the Past of the Past Discussions An unknown oxidative metabolism substantially contributes to soil Open Access Open Access Earth System CO2 emissions Earth System Dynamics 1,* 1,2 3 1 4 5 Dynamics1 3 V. Maire , G. Alvarez , J. Colombet , A. Comby , R. Despinasse , E. Dubreucq , M. Joly , A.-C. Lehours , Discussions V. Perrier5, T. Shahzad1,**, and S. Fontaine1 1INRA, UR 874 UREP, 63100 Clermont-Ferrand, France Open Access Open Access 2Clermont Universite,´ VetAgro Sup, 63000, Clermont-Ferrand, France Geoscientific Geoscientific 3University of Clermont Ferrand, UMR 6023 LMGE, 63177 Aubiere,` France Instrumentation Instrumentation 4INRA, UMR 1095 UBP, 63100 Clermont-Ferrand, France Methods and Methods and 5Montpellier SupAgro, UMR 1208 IATE, 34060 Montpellier, France *present address: Department of Biological Sciences, Macquarie -
Ana Maria Da Silva Esteves Dissertation Presented to Obtain The
Insights into the biochemical strategies of adaptation to heat stress in the hyperthermophilic archaeon Pyrococcus furiosus Ana Maria da Silva Esteves Dissertation presented to obtain the Ph.D. degree in Biochemistry Instituto de Tecnologia Química e Biológica António Xavier | Universidade Nova de Lisboa Oeiras, February, 2015 Insights into the biochemical strategies of adaptation to heat stress in the hyperthermophilic archaeon Pyrococcus furiosus Ana Maria da Silva Esteves Supervisor: Professora Helena Santos Co-supervisor: Dr. Nuno Borges Dissertation presented to obtain the Ph.D degree in Biochemistry Instituto de Tecnologia Química e Biológica António Xavier | Universidade Nova de Lisboa Oeiras, February, 2015 From left to right: Prof. Volker Müller, Dr. Emmanouil Matzapetakis, Dr. Nuno Borges (Co-supervisor), Ana M. Esteves, Prof. Helena Santos (Supervisor), Prof. Pedro Moradas Ferreira, Prof. Beate Averhoff, Prof. Hermínia de Lencastre. Oeiras, 9th of February 2015. Apoio financeiro da Fundação para a Ciência e Tecnologia e do FSE no âmbito do Quadro Comunitário de apoio, Bolsa de Doutoramento com a referência SFRH/BD/61742/2009. In loving memory of my grandmother Elisa iv Acknowledgements First, I would like to thank Prof. Helena Santos, my supervisor, for accepting me as a Ph.D. student in her laboratory. Also, I want to express my appreciation to Prof. Helena Santos for being an excellent team leader, and for her constant effort to put together the resources and expertise her students need to carry out their projects with success. Her guidance, rigor, patience and enthusiasm for science definitely contributed to my development as a young scientist. I want to thank Dr. -
The Implications of Exoenzyme Activity on Microbial Carbon and Nitrogen Limitation in Soil: a Theoretical Model
Soil Biology & Biochemistry 35 (2003) 549–563 www.elsevier.com/locate/soilbio The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model Joshua P. Schimel*, Michael N. Weintraub Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106, USA Received 17 May 2002; received in revised form 22 October 2002; accepted 8 November 2002 Abstract Traditional models of soil organic matter (SOM) decomposition are all based on first order kinetics in which the decomposition rate of a particular C pool is proportional to the size of the pool and a simple decomposition constant ðdC=dt ¼ kCÞ: In fact, SOM decomposition is catalyzed by extracellular enzymes that are produced by microorganisms. We built a simple theoretical model to explore the behavior of the decomposition–microbial growth system when the fundamental kinetic assumption is changed from first order kinetics to exoenzymes catalyzed decomposition ðdC=dt ¼ KC £ EnzymesÞ: An analysis of the enzyme kinetics showed that there must be some mechanism to produce a non-linear response of decomposition rates to enzyme concentration—the most likely is competition for enzyme binding on solid substrates as predicted by Langmuir adsorption isotherm theory. This non-linearity also induces C limitation, regardless of the potential supply of C. The linked C and N version of the model showed that actual polymer breakdown and microbial use of the released monomers can be disconnected, and that it requires relatively little N to maintain the maximal rate of decomposition, regardless of the microbial biomass’ ability to use the breakdown products. -
Lick Observatory Records: Photographs UA.036.Ser.07
http://oac.cdlib.org/findaid/ark:/13030/c81z4932 Online items available Lick Observatory Records: Photographs UA.036.Ser.07 Kate Dundon, Alix Norton, Maureen Carey, Christine Turk, Alex Moore University of California, Santa Cruz 2016 1156 High Street Santa Cruz 95064 [email protected] URL: http://guides.library.ucsc.edu/speccoll Lick Observatory Records: UA.036.Ser.07 1 Photographs UA.036.Ser.07 Contributing Institution: University of California, Santa Cruz Title: Lick Observatory Records: Photographs Creator: Lick Observatory Identifier/Call Number: UA.036.Ser.07 Physical Description: 101.62 Linear Feet127 boxes Date (inclusive): circa 1870-2002 Language of Material: English . https://n2t.net/ark:/38305/f19c6wg4 Conditions Governing Access Collection is open for research. Conditions Governing Use Property rights for this collection reside with the University of California. Literary rights, including copyright, are retained by the creators and their heirs. The publication or use of any work protected by copyright beyond that allowed by fair use for research or educational purposes requires written permission from the copyright owner. Responsibility for obtaining permissions, and for any use rests exclusively with the user. Preferred Citation Lick Observatory Records: Photographs. UA36 Ser.7. Special Collections and Archives, University Library, University of California, Santa Cruz. Alternative Format Available Images from this collection are available through UCSC Library Digital Collections. Historical note These photographs were produced or collected by Lick observatory staff and faculty, as well as UCSC Library personnel. Many of the early photographs of the major instruments and Observatory buildings were taken by Henry E. Matthews, who served as secretary to the Lick Trust during the planning and construction of the Observatory. -
Mesohaline Responses to Cycles of “Famine Or Feast” in Layered Brines
Int. Assoc. Sedimentol. Spec. Publ. (2011) 43, 315–392 Evaporitic source rocks: mesohaline responses to cycles of “famine or feast” in layered brines JOHN K. WARREN International Master Program in Petroleum Geoscience, Department of Geology, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand. Formerly: Shell Professor in Carbonate Studies, Oil and Gas Research Centre, Sultan Qaboos University, Muscat, Oman (E-mail: [email protected]) ABSTRACT Organic matter in modern saline systems tends to accumulate in bottom sediments beneath a density-stratified mass of saline water where layered hydrologies are subject to oscillations in salinity and brine level. Organic matter is not produced at a constant rate in such systems; rather, it is generated in pulses by a halotolerant community in response to relatively short times of less stressful conditions (brackish to mesohaline) that occur in the upper part of the layered hydrology. Accumulations of organic matter can occur in any layered brine lake or epeiric seaway when an upper less-saline water mass forms on top of nutrient-rich brines, or in wet mudflats wherever waters freshen in and above the uppermost few millimetres of a microbial mat. A flourishing community of halotolerant algae, bacteria and archaeal photosynthesizers drives the resulting biomass bloom. Brine freshening is a time of “feast” characterized by very high levels of organic productivity. In a stratified brine column (oligotrophic and meromictic) the typical producers are planktonic algal or cyanobacterial communities inhabiting the upper mesohaline portion of the stratified water mass. In mesohaline holomictic waters, where light penetrates to the water bottom, the organic-producing layer is typically the upper algal and bacterial portion of a benthic laminated microbialite characterized by elevated numbers of cyanobacteria. -
Exoenzyme Activities As Indicators of Dissolved Organic Matter Composition in the Hyporheic Zone of a Floodplain River
Exoenzyme activities as indicators of dissolved organic matter composition in the hyporheic zone of a floodplain river SUMMARY 1. We measured the hyporheic microbial exoenzyme activities in a floodplain river to determine whether dissolved organic matter (DOM) bioavailability varied with overlying riparian vegetation patch structure or position along flowpaths. 2. Particulate organic matter (POM), dissolved organic carbon (DOC), dissolved oxygen (DO), electrical conductivity and temperature were sampled from wells in a riparian terrace on the Queets River, Washington, U.S.A. on 25 March, 15 May, 20 July and 09 October 1999. Dissolved nitrate, ammonium and soluble reactive phosphorus were also collected on 20 July and 09 October 1999. Wells were characterised by their associated overlying vegetation: bare cobble/young alder, mid-aged alder (8-20 years) and old alder/old-growth conifer (25 to >100 years). POM was analysed for the ash-free dry mass and the activities of eight exoenzymes (x-glucosidase, B-glucosidase, B-N-acetylglucosa- minidase, xylosidase, phosphatase, leucine aminopeptidase, esterase and endopeptidase) using fluorogenic substrates. 3. Exoenzyme activities in the Queets River hyporheic zone indicated the presence of an active microbial community metabolising a diverse array of organic molecules. Individual exoenzyme activity (mean ± standard error) ranged from 0.507 ± 0.1547 to 22.8 ± 5.69 umol MUF (g AFDM)-l h-1, was highly variable among wells and varied seasonally, with the lowest rates occurring in March. Exoenzyme activities were weakly correlated with DO, DOC and inorganic nutrient concentrations. 4. Ratios of leucine aminopeptidase: B-glucosidase were low in March, May and October and high in July, potentially indicating a switch from polysaccharides to proteins as the dominant component of microbial metabolism. -
Chapter 1 Introduction
VU Research Portal A step towards the molecular detection of life on Mars Oliveira Lebre Direito, M.S. 2012 document version Publisher's PDF, also known as Version of record Link to publication in VU Research Portal citation for published version (APA) Oliveira Lebre Direito, M. S. (2012). A step towards the molecular detection of life on Mars. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. E-mail address: [email protected] Download date: 30. Sep. 2021 Chapter 1 Introduction 9 Chapter 1. Introduction The chemistry of life. What is life? One of the current definitions of life states that life is a self-replicating system capable of evolution (Pace, 2001). Others require a living entity to be able to maintain itself vis-a-vis substantial challenges and to rebuild itself after incurring damage, all of this in substantial autonomy (Westerhoff and Hofmeyr, 2005). -
The Implications of Exoenzyme Activity on C Flow and Microbial Carbon and Nitrogen Limitation in Soil
2001-2006 Mission Kearney Foundation of Soil Science: Soil Carbon and California's Terrestrial Ecosystems Final Report: 2003318, 1/1/2004-12/31/2006 The Implications of Exoenzyme Activity on C Flow and Microbial Carbon and Nitrogen Limitation in Soil Joshua P. Schimel1, Shinichi Asao2, Allen Doyle3, Keri Holland4, Eric Seabloom5, Elizabeth Borer5 Summary It has become increasingly clear that extracellular enzymes regulate decomposition and C flow in the environment. However, the specific kinetics and mechanisms regulating enzyme activity and function have been poorly understood. This project took a novel theoretical framework and tested key predictions of that theory that described how C and N availability regulate enzymes and overall C flow. Objectives Exoenzymes mediate breakdown of soil organic matter, and therefore must be included in models of SOM breakdown. Exoenzyme production must be mediated by microbial community composition, and should not ensue unless the returns on production exceed the metabolic costs. High rates of diffusion (Ekschmitt et al. 2005) or high concentrations of cheaters (microbes not producing enzymes but taking up product) can limit rates of production because of low returns on investment (Allison 2005). In contrast, saturation of substrate on enzymes also inhibits production by lowering the return on investment (Schimel and Weintraub 2003). High returns on investment should favor producer community and, therefore, the functionality of enzymes in soils may in part structure microbial communities in soils. A significant portion of enzymes become stabilized in soils, and maintain some activity although kinetic parameters can change as enzymatic conformation is altered by sorption and clay-binding; the large degree of stabilized enzymes in soils may drive enzyme evolution for functionality in the stabilized state (Leprince and Quiquampoix 1996). -
The Eukaryotic Host Factor That Activates Exoenzyme S of Pseudomonas Aeruginosa Is a Member of the 14-3-3 Protein Family
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 2320-2324, March 1993 Biochemistry The eukaryotic host factor that activates exoenzyme S of Pseudomonas aeruginosa is a member of the 14-3-3 protein family HAIAN Fu*, JENIFER COBURNt, AND R. JOHN COLLIER*t *Department of Microbiology and Molecular Genetics, and Shipley Institute of Medicine, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115; and tDivision of Rheumatology, New England Medical Center, 750 Washington Street, Boston, MA 02111 Contributed by R. John Collier, December 21, 1992 ABSTRACT Exoenzyme S (ExoS), which has been impli- heat-labile toxin are stimulated by several orders of magni- cated as a virulence factor of Pseudomonas aeruginosa, cata- tude by a 21-kDa eukaryotic GTP-binding protein, termed lyzes transfer of the ADP-ribose moiety of NADI to many ADP-ribosylation factor (ARF; refs. 7 and 8). ARFs appear eukaryotic cellular proteins. Its preferred substrates include to be abundant and ubiquitous and represent a subfamily of Ras and several other 21- to 25-kDa GTP-binding proteins. the highly conserved GTP-binding proteins of the Ras super- ExoS absolutely requires a ubiquitous eukaryotic protein family. Evidence is accumulating that ARF is associated with factor, termed FAS (factor activating ExoS), for enzymatic Golgi membranes and may be directly involved in the regu- activity. Here we describe the cloning and expression of a gene lation of vesicle trafficking (9). It has also been reported that encoding FAS from a bovine brain cDNA library and demon- the ADP-ribosyltransferase activity of exoenzyme C3, se- strate that purified recombinant FAS produced in Escherichia creted from Clostridium botulinum, is enhanced by a bovine coli activates ExoS in a defined cell-free system.