Morphology of Bacteria
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Fine Structure of Diplococcus Pneumoniae
THE FINE STRUCTURE OF DIPLOCOCCUS PNEUMONIAE ALEXANDER TOMASZ, Ph.D., JAMES D. JAMIESON, M.D., and ELENA OTTOLENGtII, M.D. From The Rockefeller Institute and the New York University School of Medicine, New York ABSTRACT The fine structure of an unencapsulated strain of Diplococcus pneumoniae is described. A strik- ing feature of thcsc bacteria is an intracytoplasmic membrane system which appears to be an extension of septa of dividing bactcria. The possible function of these structures and their relationship to the plasma membrane and other types of intracytoplasmic membranes found in pncumococcus is discussed. INTRODUCTION Our main interest in the fine structure of Diplo- walls. Throughout this paper, such preparations will coccus pneumoniae stems from the fact that these be referred to as "spheroplasts." bacteria readily undergo genetic transformation. The bacteria were fixed and stained according to the method of Ryter and Kellenberger (4), embedded Prior to undertaking electron microscope studies in cross-linked methacrylate, and sectioned with a on this process, the fine structure of pneumococcal Porter-Blum mlcrotome using a diamond knife. The cells in thin sections was examined. During the sections were stained with lead according to the preliminary stage of these studies on a transform- method of Karnovsky (5) (method B) and were able strain, we observed some unique membranous examined in the RCA electron microscopes models structures which, to the best of our knowledge, 2B, 3F, or in the Siemens Elmiskop I. have not previously been described in bacteria. RESULTS MATERIALS AND METHODS The nuclear region of pneumococcus resembles that Unencapsulated strains of Diplocoecus pneumoniae R6, of other bacteria prepared by the method of R1, and some nutritional mutants derived from R6 Ryter and Kellenberger (4). -
Advanced Morphometric Techniques Applied to The
UNIVERSIDAD POLITÉCNICA DE MADRID ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY TESIS DOCTORAL Yasser Alemán Gómez Ingeniero en Tecnologías Nucleares y Energéticas Máster en Neurociencias Madrid, 2015 DEPARTAMENTO DE INGENIERÍA ELECTRÓNICA ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN PHD THESIS ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY AUTHOR Yasser Alemán Gómez Ing. en Tecnologías Nucleares y Energéticas MSc en Neurociencias ADVISOR Manuel Desco Menéndez, MScE, MD, PhD Madrid, 2015 Departamento de Ingeniería Electrónica Escuela Técnica Superior de Ingenieros de Telecomunicación Universidad Politécnica de Madrid Ph.D. Thesis Advanced morphometric techniques applied to the study of human brain anatomy Tesis doctoral Técnicas avanzadas de morfometría aplicadas al estudio de la anatomía cerebral humana Author: Yasser Alemán Gómez Advisor: Manuel Desco Menéndez Committee: Andrés Santos Lleó Universidad Politécnica de Madrid, Madrid, Spain Javier Pascau Gonzalez-Garzón Universidad Carlos III de Madrid, Madrid, Spain Raymond Salvador Civil FIDMAG – Germanes Hospitalàries, Barcelona, Spain Pablo Campo Martínez-Lage Universidad Autónoma de Madrid, Madrid, Spain Juan Domingo Gispert López Universidad Pompeu Fabra, Barcelona, Spain María Jesús Ledesma Carbayo Universidad Politécnica de Madrid, Madrid, Spain Juan José Vaquero López Universidad Carlos III de Madrid, Madrid, Spain Esta Tesis ha sido desarrollada en el Laboratorio de Imagen Médica de la Unidad de Medicina y Cirugía Experimental del Instituto de Investigación Sanitaria Gregorio Marañón y en colaboración con el Servicio de Psiquiatría del Niño y del Adolescente del Departamento de Psiquiatría del Hospital General Universitario Gregorio Marañón de Madrid, España. Tribunal nombrado por el Sr. -
Streptococcus Pneumoniae Capsular Polysaccharide Is Linked to Peptidoglycan Via a Direct Glycosidic Bond to Β-D-N-Acetylglucosamine
Streptococcus pneumoniae capsular polysaccharide is linked to peptidoglycan via a direct glycosidic bond to β-D-N-acetylglucosamine Thomas R. Larsona and Janet Yothera,1 aDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294-2170 Edited by Emil C. Gotschlich, The Rockefeller University, New York, NY, and approved April 14, 2017 (received for review December 20, 2016) For many bacteria, including those important in pathogenesis, (Und-P). In S. pneumoniae serotype 2 CPS, Glcp-1-P is trans- expression of a surface-localized capsular polysaccharide (CPS) can ferred from UDP-Glcp (11), and this is followed by addition of be critical for survival in host environments. In Gram-positive the remaining sugars (12, 13) to form the complete repeat unit bacteria, CPS linkage is to either the cytoplasmic membrane or the (Fig. 1). Und-P-P-oligosaccharide repeat units are translocated cell wall. Despite the frequent occurrence and essentiality of these to the outer face of the cytoplasmic membrane by Wzx and po- polymers, the exact nature of the cell wall linkage has not been lymerized into high molecular weight (MW) polysaccharide by described in any bacterial species. Using the Streptococcus pneu- Wzy. Growth occurs at the reducing end, with single or multiple moniae serotype 2 CPS, which is synthesized by the widespread repeat units being transferred en bloc from Und-P-P to an ac- Wzy mechanism, we found that linkage occurs via the reducing ceptor Und-P-P-oligosaccharide repeat unit. Hydrolysis of the β N- end glucose of CPS and the -D- acetylglucosamine (GlcNAc) res- donor Und-P-P that remains after transfer yields Und-P, which is idues of peptidoglycan (PG). -
A Practical Introduction to Landmark-Based Geometric Morphometrics
A PRACTICAL INTRODUCTION TO LANDMARK-BASED GEOMETRIC MORPHOMETRICS MARK WEBSTER Department of the Geophysical Sciences, University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60637 and H. DAVID SHEETS Department of Physics, Canisius College, 2001 Main Street, Buffalo, NY 14208 ABSTRACT.—Landmark-based geometric morphometrics is a powerful approach to quantifying biological shape, shape variation, and covariation of shape with other biotic or abiotic variables or factors. The resulting graphical representations of shape differences are visually appealing and intuitive. This paper serves as an introduction to common exploratory and confirmatory techniques in landmark-based geometric morphometrics. The issues most frequently faced by (paleo)biologists conducting studies of comparative morphology are covered. Acquisition of landmark and semilandmark data is discussed. There are several methods for superimposing landmark configu- rations, differing in how and in the degree to which among-configuration differences in location, scale, and size are removed. Partial Procrustes superimposition is the most widely used superimposition method and forms the basis for many subsequent operations in geometric morphometrics. Shape variation among superimposed con- figurations can be visualized as a scatter plot of landmark coordinates, as vectors of landmark displacement, as a thin-plate spline deformation grid, or through a principal components analysis of landmark coordinates or warp scores. The amount of difference in shape between two configurations can be quantified as the partial Procrustes distance; and shape variation within a sample can be quantified as the average partial Procrustes distance from the sample mean. Statistical testing of difference in mean shape between samples using warp scores as variables can be achieved through a standard Hotelling’s T2 test, MANOVA, or canonical variates analysis (CVA). -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Cell Structure and Function in the Bacteria and Archaea
4 Chapter Preview and Key Concepts 4.1 1.1 DiversityThe Beginnings among theof Microbiology Bacteria and Archaea 1.1. •The BacteriaThe are discovery classified of microorganismsinto several Cell Structure wasmajor dependent phyla. on observations made with 2. theThe microscope Archaea are currently classified into two 2. •major phyla.The emergence of experimental 4.2 Cellscience Shapes provided and Arrangements a means to test long held and Function beliefs and resolve controversies 3. Many bacterial cells have a rod, spherical, or 3. MicroInquiryspiral shape and1: Experimentation are organized into and a specific Scientificellular c arrangement. Inquiry in the Bacteria 4.31.2 AnMicroorganisms Overview to Bacterialand Disease and Transmission Archaeal 4.Cell • StructureEarly epidemiology studies suggested how diseases could be spread and 4. Bacterial and archaeal cells are organized at be controlled the cellular and molecular levels. 5. • Resistance to a disease can come and Archaea 4.4 External Cell Structures from exposure to and recovery from a mild 5.form Pili allowof (or cells a very to attach similar) to surfacesdisease or other cells. 1.3 The Classical Golden Age of Microbiology 6. Flagella provide motility. Our planet has always been in the “Age of Bacteria,” ever since the first 6. (1854-1914) 7. A glycocalyx protects against desiccation, fossils—bacteria of course—were entombed in rocks more than 3 billion 7. • The germ theory was based on the attaches cells to surfaces, and helps observations that different microorganisms years ago. On any possible, reasonable criterion, bacteria are—and always pathogens evade the immune system. have been—the dominant forms of life on Earth. -
Bacterial Size, Shape and Arrangement & Cell Structure And
Lecture 13, 14 and 15: bacterial size, shape and arrangement & Cell structure and components of bacteria and Functional anatomy and reproduction in bacteria Bacterial size, shape and arrangement Bacteria are prokaryotic, unicellular microorganisms, which lack chlorophyll pigments. The cell structure is simpler than that of other organisms as there is no nucleus or membrane bound organelles.Due to the presence of a rigid cell wall, bacteria maintain a definite shape, though they vary as shape, size and structure. When viewed under light microscope, most bacteria appear in variations of three major shapes: the rod (bacillus), the sphere (coccus) and the spiral type (vibrio). In fact, structure of bacteria has two aspects, arrangement and shape. So far as the arrangement is concerned, it may Paired (diplo), Grape-like clusters (staphylo) or Chains (strepto). In shape they may principally be Rods (bacilli), Spheres (cocci), and Spirals (spirillum). Size of Bacterial Cell The average diameter of spherical bacteria is 0.5- 2.0 µm. For rod-shaped or filamentous bacteria, length is 1-10 µm and diameter is 0.25-1 .0 µm. E. coli , a bacillus of about average size is 1.1 to 1.5 µm wide by 2.0 to 6.0 µm long. Spirochaetes occasionally reach 500 µm in length and the cyanobacterium Accepted wisdom is that bacteria are smaller than eukaryotes. But certain cyanobacteria are quite large; Oscillatoria cells are 7 micrometers diameter. The bacterium, Epulosiscium fishelsoni , can be seen with the naked eye (600 mm long by 80 mm in diameter). One group of bacteria, called the Mycoplasmas, have individuals with size much smaller than these dimensions. -
Morphometric Analysis of Brain in Newborn with Congenital Diaphragmatic Hernia
brain sciences Article Morphometric Analysis of Brain in Newborn with Congenital Diaphragmatic Hernia Martina Lucignani 1, Daniela Longo 2, Elena Fontana 2, Maria Camilla Rossi-Espagnet 2,3, Giulia Lucignani 2, Sara Savelli 4, Stefano Bascetta 4, Stefania Sgrò 5, Francesco Morini 6, Paola Giliberti 6 and Antonio Napolitano 1,* 1 Medical Physics Department, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] 2 Neuroradiology Unit, Imaging Department, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] (D.L.); [email protected] (E.F.); [email protected] (M.C.R.-E.); [email protected] (G.L.) 3 NESMOS Department, Sant’Andrea Hospital, Sapienza University, 00189 Rome, Italy 4 Imaging Department, Bambino Gesù Children’s Hospital and Research Institute, 00165 Rome, Italy; [email protected] (S.S.); [email protected] (S.B.) 5 Department of Anesthesia and Critical Care, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] 6 Department of Medical and Surgical Neonatology, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] (F.M.); [email protected] (P.G.) * Correspondence: [email protected]; Tel.: +39-333-3214614 Abstract: Congenital diaphragmatic hernia (CDH) is a severe pediatric disorder with herniation of abdominal viscera into the thoracic cavity. Since neurodevelopmental impairment constitutes a common outcome, we performed morphometric magnetic resonance imaging (MRI) analysis on Citation: Lucignani, M.; Longo, D.; CDH infants to investigate cortical parameters such as cortical thickness (CT) and local gyrification Fontana, E.; Rossi-Espagnet, M.C.; index (LGI). -
Structure and Morphology Micro-‐Level Morphology
Chapter 2 Majority of illustraons in this presentaon are from Biological Psychology 4th edi3on (© Sinuer Publicaons) Structure and Morphology 1. To understand behavior, as it relates to many processes in the brain, it is important to study the structure or morphology of the brain. 2. We can study the structure of brain at the micro level, looking at small units like neurons, dendrites and receptors etc. or at the macro level, looking at the regions, areas, and nuclei and/or study the brain. 2 Micro-Level Morphology 1. To study the morphology of brain at the micro level tools and techniques had to be developed. One such development was the inven3on of the op3cal microscope (Leeuwenhoek, 17th century). 2. More recent developments include electron microscope with increased magnificaon. 3 1 Micro-Level Morphology 3. Looking at he brain meant cung the brain, staining it, and make them worthy of the microscope. Many different staining methods have developed. 4 Camillo Golgi 1. Golgi developed the silver method to stain the nerve 3ssue. 2. Believed that neurons connected in a (1737-1798 AD) “syncium”, by blending. This theory was called re3cular theory of neurons. 5 Ramón y Cajal 1. Cajal also used the silver method to stain the brain, but 2. Believed that neurons were separate and communicated through gaps (1852-1934) (synapse). This came to be known as the neuron doctrine. 6 2 Cells in Brain 7 Neurons There are 100 billion neurons in the human brain. Packed with 10 3mes more glial cells. Each neuron is divided into three parts; dendrites, cell body and axon. -
Transformation
BNL-71843-2003-BC The Ptieumococcus Editor : E. Tuomanen Associate Editors : B. Spratt, T. Mitchell, D. Morrison To be published by ASM Press, Washington. DC Chapter 9 Transformation Sanford A. Lacks* Biology Department Brookhaven National Laboratory Upton, NY 11973 Phone: 631-344-3369 Fax: 631-344-3407 E-mail: [email protected] Introduction Transformation, which alters the genetic makeup of an individual, is a concept that intrigues the human imagination. In Streptococcus pneumoniae such transformation was first demonstrated. Perhaps our fascination with genetics derived from our ancestors observing their own progeny, with its retention and assortment of parental traits, but such interest must have been accelerated after the dawn of agriculture. It was in pea plants that Gregor Mendel in the late 1800s examined inherited traits and found them to be determined by physical elements, or genes, passed from parents to progeny. In our day, the material basis of these genetic determinants was revealed to be DNA by the lowly bacteria, in particular, the pneumococcus. For this species, transformation by free DNA is a sexual process that enables cells to sport new combinations of genes and traits. Genetic transformation of the type found in S. pneumoniae occurs naturally in many species of bacteria (70), but, initially only a few other transformable species were found, namely, Haemophilus influenzae, Neisseria meningitides, Neisseria gonorrheae, and Bacillus subtilis (96). Natural transformation, which requires a set of genes evolved for the purpose, contrasts with artificial transformation, which is accomplished by shocking cells either electrically, as in electroporation, or by ionic and temperature shifts. Although such artificial treatments can introduce very small amounts of DNA into virtually any type of cell, the amounts introduced by natural transformation are a million-fold greater, and S. -
Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology
Biology and Philosophy 18: 309–345, 2003. © 2003 Kluwer Academic Publishers. Printed in the Netherlands. Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology ALAN C. LOVE Department of History and Philosophy of Science University of Pittsburgh CL 1017 Pittsburgh, PA 15260 U.S.A. E-mail: [email protected] Abstract. One foundational question in contemporary biology is how to ‘rejoin’ evolution and development. The emerging research program (evolutionary developmental biology or ‘evo- devo’) requires a meshing of disciplines, concepts, and explanations that have been developed largely in independence over the past century. In the attempt to comprehend the present separation between evolution and development much attention has been paid to the split between genetics and embryology in the early part of the 20th century with its codification in the exclusion of embryology from the Modern Synthesis. This encourages a characterization of evolutionary developmental biology as the marriage of evolutionary theory and embryology via developmental genetics. But there remains a largely untold story about the significance of morphology and comparative anatomy (also minimized in the Modern Synthesis). Functional and evolutionary morphology are critical for understanding the development of a concept central to evolutionary developmental biology, evolutionary innovation. Highlighting the discipline of morphology and the concepts of innovation and novelty provides an alternative way of conceptualizing the ‘evo’ and the ‘devo’ to be synthesized. Key words: comparative anatomy, developmental genetics, embryology, evolutionary developmental biology, innovation, morphology, novelty, synthesis, typology 1. Introduction and methodology ... problems concerned with the orderly development of the individual are unrelated to those of the evolution of organisms through time ..