2320-5407 Int. J. Adv. Res. 7(12), 323-340
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Ecuador & the Galapagos Islands
Ecuador & The Galapagos Islands Naturetrek Tour Report 14 - 30 January 2008 Report compiled by Lelis Navarrete Naturetrek Cheriton Mill Cheriton Alresford Hampshire SO24 0NG England T: +44 (0)1962 733051 F: +44 (0)1962 736426 E: [email protected] W: www.naturetrek.co.uk Tour Report Ecuador & The Galapagos Islands Tour Leader: Lelis Navarrete Participants: Richard Ball Ann Ball Avril Wells Elizabeth Savage Anthony Bourne Margaret Williams Richard Ratcliffe Helen Lewis John Lewis Mary Brunning Alan Brunning Aileen Alderton Bridget Howard Terry Bate Clive Bate Day 1 Monday 14th January Only Ann and Richard were in the Mercure Hotel waiting for the group but unfortunately the British Airways plane had some problems with the brakes and the captain decided that they would change planes before starting from Heathrow airport, as a result the connection with American Airline flight was missed in Miami, the group had to stay overnight in the Marriott Hotel in Miami to get the flights from the following day. Day 2 Tuesday 15th January Terry and Clive arrived around 8:30 to Mercure Hotel and the rest arrived close to mid-night. Day 3 Wednesday 16th January A very early start to catch our flight to Galapagos Islands, the weather conditions had us leaving half an hour than the scheduled time but we arrive in Baltra airport slightly before 11:00 AM, then transfer to the “Cachalote” and sail to Itabaca Channel for a short stop to get supplies, later on we sailed to Islas Plazas arriving into South Plaza near 3:30 PM for our first land visit; slightly after 10:00 PM we sailed to San Cristobal Island. -
Blenniiformes, Tripterygiidae) from Taiwan
A peer-reviewed open-access journal ZooKeys 216: 57–72 (2012) A new species of the genus Helcogramma from Taiwan 57 doi: 10.3897/zookeys.216.3407 RESEARCH articLE www.zookeys.org Launched to accelerate biodiversity research A new species of the genus Helcogramma (Blenniiformes, Tripterygiidae) from Taiwan Min-Chia Chiang1,†, I-Shiung Chen1,2,‡ 1 Institute of Marine Biology, National Taiwan Ocean University, Keelung 202, Taiwan, ROC 2 Center for Mari- ne Bioenvironment and Biotechnology (CMBB), National Taiwan Ocean University, Keelung 202, Taiwan, ROC † urn:lsid:zoobank.org:author:D82C98B9-D9AA-46E1-83F7-D8BB74776122 ‡ urn:lsid:zoobank.org:author:6094BBA6-5EE6-420F-BAA5-F52D44F11F14 Corresponding author: I-Shiung Chen ([email protected]) Academic editor: Carole Baldwin | Received 19 May 2012 | Accepted 13 August 2012 | Published 21 August 2012 urn:lsid:zoobank.org:pub:2D3E6BCC-171E-4702-B759-E7D7FCEA88DB Citation: Chiang M-C, Chen I-S (2012) A new species of the genus Helcogramma (Blenniiformes, Tripterygiidae) from Taiwan. ZooKeys 216: 57–72. doi: 10.3897/zookeys.216.3407 Abstract A new species of triplefin fish (Blenniiformes: Tripterygiidae), Helcogramma williamsi, is described from six specimens collected from southern Taiwan. This species is well distinguished from its congeners by possess- ing 13 second dorsal-fin spines; third dorsal-fin rays modally 11; anal-fin rays modally 19; pored scales in lateral line 22-24; dentary pore pattern modally 5+1+5; lobate supraorbital cirrus; broad, serrated or pal- mate nasal cirrus; first dorsal fin lower in height than second; males with yellow mark extending from ante- rior tip of upper lip to anterior margin of eye and a whitish blue line extending from corner of mouth onto preopercle. -
Table S1.Xlsx
Bone type Bone type Taxonomy Order/series Family Valid binomial Outdated binomial Notes Reference(s) (skeletal bone) (scales) Actinopterygii Incertae sedis Incertae sedis Incertae sedis †Birgeria stensioei cellular this study †Birgeria groenlandica cellular Ørvig, 1978 †Eurynotus crenatus cellular Goodrich, 1907; Schultze, 2016 †Mimipiscis toombsi †Mimia toombsi cellular Richter & Smith, 1995 †Moythomasia sp. cellular cellular Sire et al., 2009; Schultze, 2016 †Cheirolepidiformes †Cheirolepididae †Cheirolepis canadensis cellular cellular Goodrich, 1907; Sire et al., 2009; Zylberberg et al., 2016; Meunier et al. 2018a; this study Cladistia Polypteriformes Polypteridae †Bawitius sp. cellular Meunier et al., 2016 †Dajetella sudamericana cellular cellular Gayet & Meunier, 1992 Erpetoichthys calabaricus Calamoichthys sp. cellular Moss, 1961a; this study †Pollia suarezi cellular cellular Meunier & Gayet, 1996 Polypterus bichir cellular cellular Kölliker, 1859; Stéphan, 1900; Goodrich, 1907; Ørvig, 1978 Polypterus delhezi cellular this study Polypterus ornatipinnis cellular Totland et al., 2011 Polypterus senegalus cellular Sire et al., 2009 Polypterus sp. cellular Moss, 1961a †Scanilepis sp. cellular Sire et al., 2009 †Scanilepis dubia cellular cellular Ørvig, 1978 †Saurichthyiformes †Saurichthyidae †Saurichthys sp. cellular Scheyer et al., 2014 Chondrostei †Chondrosteiformes †Chondrosteidae †Chondrosteus acipenseroides cellular this study Acipenseriformes Acipenseridae Acipenser baerii cellular Leprévost et al., 2017 Acipenser gueldenstaedtii -
The Morphology and Evolution of Tooth Replacement in the Combtooth Blennies
The morphology and evolution of tooth replacement in the combtooth blennies (Ovalentaria: Blenniidae) A THESIS SUBMITTED TO THE FACULTY OF THE UNIVERSITY OF MINNESOTA BY Keiffer Logan Williams IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE Andrew M. Simons July 2020 ©Keiffer Logan Williams 2020 i ACKNOWLEDGEMENTS I thank my adviser, Andrew Simons, for mentoring me as a student in his lab. His mentorship, kindness, and thoughtful feedback/advice on my writing and research ideas have pushed me to become a more organized and disciplined thinker. I also like to thank my committee: Sharon Jansa, David Fox, and Kory Evans for feedback on my thesis and during committee meetings. An additional thank you to Kory, for taking me under his wing on the #backdattwrasseup project. Thanks to current and past members of the Simons lab/office space: Josh Egan, Sean Keogh, Tyler Imfeld, and Peter Hundt. I’ve enjoyed the thoughtful discussions, feedback on my writing, and happy hours over the past several years. Thanks also to the undergraduate workers in the Simons lab who assisted with various aspects of my work: Andrew Ching and Edward Hicks for helping with histology, and Alex Franzen and Claire Rude for making my terms as curatorial assistant all the easier. In addition, thank you to Kate Bemis and Karly Cohen for conducting a workshop on histology to collect data for this research, and for thoughtful conversations and ideas relating to this thesis. Thanks also to the University of Guam and Laurie Raymundo for hosting me as a student to conduct fieldwork for this research. -
Biota Neotropica ISSN 1806-129X English Vol 8 N 3
biota neotropica ISSN 1806-129X english vol 8 n 3 Biota Neotropica is a scientific journal of the Program BIOTA/FAPESP - The Virtual Institute of Biodiversity that publishes the results of original research work, associated or not to the program, that involve characterization, conservation and sustainable use of biodiversity in the Neotropical region. Biota Neotropica is an eletronic journal which is available free at the following site http://www.biotaneotropica.org.br This hardcopy of Biota Neotropica has been deposited in reference libraries to fulfill the requirements of the Botanical and Zoological Nomenclatural Codes. Biota Neotrop., vol. 8, no. 3, Jul./Set. 2008 Biota Neotropica, Biota/Fapesp – O Instituto Virtual da Biodiversidade vol. 8, n. 3 (2008) Campinas, Centro de Referência em Informação Ambiental, 2008. Quarterly Portuguese and English publication ISSN: 1806-129X (English Version-Printed) Biodiversity – Periodical CDD-639-9 Desktop Publishing www.cubomultimidia.com.br http://www.biotaneotropica.org.br editora editora editora editora editora editora Biota Neotrop., vol. 8, no. 3, Jul./Set. 2008 Editorial Biodiversity and climate change in the Neotropical region. The isolation of South America from Central America and Africa during the Tertiary Period left a strong imprint on the biota of the Neotropics. For almost 100 million years Neotropical flora, fauna and microorganisms evolved in completely isolation. The emergence of a continuous land bridge, 3 Ma years ago, between Central and South America is well documented and is demonstrated by the arrival of temperate elements in South American highlands and concurrent appearance of South American taxa in Central America. There is strong evidence of displacement of the Neotropical fauna, especially mammals, by northern immigrants, but the same is not observed in relation to plants. -
Ecuador's Biodiversity Hotspots
Ecuador’s Biodiversity Hotspots Destination: Andes, Amazon & Galapagos Islands, Ecuador Duration: 19 Days Dates: 29th June – 17th July 2018 Exploring various habitats throughout the wonderful & diverse country of Ecuador Spotting a huge male Andean bear & watching as it ripped into & fed on bromeliads Watching a Eastern olingo climbing the cecropia from the decking in Wildsumaco Seeing ~200 species of bird including 33 species of dazzling hummingbirds Watching a Western Galapagos racer hunting, catching & eating a Marine iguana Incredible animals in the Galapagos including nesting flightless cormorants 36 mammal species including Lowland paca, Andean bear & Galapagos fur seals Watching the incredible and tiny Pygmy marmoset in the Amazon near Sacha Lodge Having very close views of 8 different Andean condors including 3 on the ground Having Galapagos sea lions come up & interact with us on the boat and snorkelling Tour Leader / Guides Overview Martin Royle (Royle Safaris Tour Leader) Gustavo (Andean Naturalist Guide) Day 1: Quito / Puembo Francisco (Antisana Reserve Guide) Milton (Cayambe Coca National Park Guide) ‘Campion’ (Wildsumaco Guide) Day 2: Antisana Wilmar (Shanshu), Alex and Erica (Amazonia Guides) Gustavo (Galapagos Islands Guide) Days 3-4: Cayambe Coca Participants Mr. Joe Boyer Days 5-6: Wildsumaco Mrs. Rhoda Boyer-Perkins Day 7: Quito / Puembo Days 8-10: Amazon Day 11: Quito / Puembo Days 12-18: Galapagos Day 19: Quito / Puembo Royle Safaris – 6 Greenhythe Rd, Heald Green, Cheshire, SK8 3NS – 0845 226 8259 – [email protected] Day by Day Breakdown Overview Ecuador may be a small country on a map, but it is one of the richest countries in the world in terms of life and biodiversity. -
Genome Composition Plasticity in Marine Organisms
Genome Composition Plasticity in Marine Organisms A Thesis submitted to University of Naples “Federico II”, Naples, Italy for the degree of DOCTOR OF PHYLOSOPHY in “Applied Biology” XXVIII cycle by Andrea Tarallo March, 2016 1 University of Naples “Federico II”, Naples, Italy Research Doctorate in Applied Biology XXVIII cycle The research activities described in this Thesis were performed at the Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples, Italy and at the Fishery Research Laboratory, Kyushu University, Fukuoka, Japan from April 2013 to March 2016. Supervisor Dr. Giuseppe D’Onofrio Tutor Doctoral Coordinator Prof. Claudio Agnisola Prof. Ezio Ricca Candidate Andrea Tarallo Examination pannel Prof. Maria Moreno, Università del Sannio Prof. Roberto De Philippis, Università di Firenze Prof. Mariorosario Masullo, Università degli Studi Parthenope 2 LIST OF PUBLICATIONS 1. On the genome base composition of teleosts: the effect of environment and lifestyle A Tarallo, C Angelini, R Sanges, M Yagi, C Agnisola, G D’Onofrio BMC Genomics 17 (173) 2016 2. Length and GC Content Variability of Introns among Teleostean Genomes in the Light of the Metabolic Rate Hypothesis A Chaurasia, A Tarallo, L Bernà, M Yagi, C Agnisola, G D’Onofrio PloS one 9 (8), e103889 2014 3. The shifting and the transition mode of vertebrate genome evolution in the light of the metabolic rate hypothesis: a review L Bernà, A Chaurasia, A Tarallo, C Agnisola, G D'Onofrio Advances in Zoology Research 5, 65-93 2013 4. An evolutionary acquired functional domain confers neuronal fate specification properties to the Dbx1 transcription factor S Karaz, M Courgeon, H Lepetit, E Bruno, R Pannone, A Tarallo, F Thouzé, P Kerner, M Vervoort, F Causeret, A Pierani and G D’Onofrio EvoDevo, Submitted 5. -
The Divergent Genomes of Teleosts
Postprint copy Annu. Rev. Anim. Biosci. 2018. 6:X--X https://doi.org/10.1146/annurev-animal-030117-014821 Copyright © 2018 by Annual Reviews. All rights reserved RAVI ■ VENKATESH DIVERGENT GENOMES OF TELEOSTS THE DIVERGENT GENOMES OF TELEOSTS Vydianathan Ravi and Byrappa Venkatesh Institute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research), Biopolis, Singapore 138673, Singapore; email: [email protected], [email protected] ■ Abstract Boasting nearly 30,000 species, teleosts account for half of all living vertebrates and approximately 98% of all ray-finned fish species (Actinopterygii). Teleosts are also the largest and most diverse group of vertebrates, exhibiting an astonishing level of morphological, physiological, and behavioral diversity. Previous studies had indicated that the teleost lineage has experienced an additional whole-genome duplication event. Recent comparative genomic analyses of teleosts and other bony vertebrates using spotted gar (a nonteleost ray-finned fish) and elephant shark (a cartilaginous fish) as outgroups have revealed several divergent features of teleost genomes. These include an accelerated evolutionary rate of protein-coding and nucleotide sequences, a higher rate of intron turnover, and loss of many potential cis-regulatory elements and shorter conserved syntenic blocks. A combination of these divergent genomic features might have contributed to the evolution of the amazing phenotypic diversity and morphological innovations of teleosts. Keywords whole-genome duplication, evolutionary rate, intron turnover, conserved noncoding elements, conserved syntenic blocks, phenotypic diversity INTRODUCTION With over 68,000 known species (IUCN 2017; http://www.iucnredlist.org), vertebrates are the most dominant and successful group of animals on earth, inhabiting both terrestrial and aquatic habitats. -
Concentración Y Tiempo Máximo De Exposición De Juveniles De Pargo
State of research of the Osteichthyes fish related to coral reefs in the Honduran Caribbean with catalogued records Estado del conocimiento de los peces osteíctios asociados a los arrecifes de coral en el Caribe de Honduras, con registros catalogados Anarda Isabel Salgado Ordoñez1, Julio Enrique Mérida Colindres1* & Gustavo Adolfo Cruz1 ABSTRACT Research on Honduran coral reef fish has been isolated and scattered. A list of fish species related to coral reefs was consolidated to establish a compiled database with updated taxonomy. The study was conducted between October 2017 and December 2018. Using primary and secondary sources, all potential species in the Western Atlantic were considered, and their actual presence was confirmed using catalogued records published in peer-reviewed journals that included Honduras. In addition, the specimens kept in the Museum of Natural History of Universidad Nacional Autónoma de Honduras were added. Once the list was consolidated, the taxonomic status of each species was updated based on recent literature. A total of 159 species and 76 genera were registered in 32 families. The family with the most species was Labrisomidae with 27 species (17%). Five families had more than five 5 genera registered, while four 4 were represented by more than 16 species, which is equivalent to 42% genera and 51% species. Gobiidae was represented by 10 genera (13%) and 21 species (13%), of which two 2 were endemic: Tigrigobius rubrigenis and Elacatinus lobeli. In turn, Grammatidae was represented by one endemic species Lipogramma idabeli (1.8%). The species Diodon holocanthus and Sphoeroides testudineus represent the first catalogued records for Honduras. -
Validation of the Synonymy of the Teleost Blenniid Fish Species
Zootaxa 4072 (2): 171–184 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4072.2.2 http://zoobank.org/urn:lsid:zoobank.org:pub:8AC3AF86-10AA-4F57-A86D-3E8BA4F26EE5 Validation of the synonymy of the teleost blenniid fish species Salarias phantasticus Boulenger 1897 and Salarias anomalus Regan 1905 with Ecsenius pulcher (Murray 1887) based on DNA barcoding and morphology GILAN ATTARAN-FARIMANI1, SANAZ ESTEKANI2, VICTOR G. SPRINGER3, OLIVER CRIMMEN4, G. DAVID JOHNSON3 & CAROLE C. BALDWIN3,5 1Chabahar Maritime University, Faculty of Marine Science, Chabahar, Iran 2MSc student, Chabahar Maritime University, Faculty of Marine Science, Chabahar, Iran 3National Museum of Natural History, Smithsonian Institution 4Natural History Museum, London 5Corresponding author. E-mail: [email protected] Abstract As currently recognized, Ecsenius pulcher includes Salarias pulcher (type material has a banded color pattern), S. anom- alus (non-banded), and S. phantasticus (banded). The color patterns are not sex linked, and no other morphological fea- tures apparently distinguish the three nominal species. The recent collection of banded and non-banded specimens of Ecsenius pulcher from Iran has provided the first tissue samples for genetic analyses. Here we review the taxonomic his- tory of E. pulcher and its included synonyms and genetically analyze tissue samples of both color patterns. Salarias anom- alus is retained as a synonym of E. pulcher because DNA barcode data suggest that they represent banded and non-banded color morphs of a single species. Furthermore, the large size of the largest type specimen of S. -
Annotated Checklist of the Fish Species (Pisces) of La Réunion, Including a Red List of Threatened and Declining Species
Stuttgarter Beiträge zur Naturkunde A, Neue Serie 2: 1–168; Stuttgart, 30.IV.2009. 1 Annotated checklist of the fish species (Pisces) of La Réunion, including a Red List of threatened and declining species RONALD FR ICKE , THIE rr Y MULOCHAU , PA tr ICK DU R VILLE , PASCALE CHABANE T , Emm ANUEL TESSIE R & YVES LE T OU R NEU R Abstract An annotated checklist of the fish species of La Réunion (southwestern Indian Ocean) comprises a total of 984 species in 164 families (including 16 species which are not native). 65 species (plus 16 introduced) occur in fresh- water, with the Gobiidae as the largest freshwater fish family. 165 species (plus 16 introduced) live in transitional waters. In marine habitats, 965 species (plus two introduced) are found, with the Labridae, Serranidae and Gobiidae being the largest families; 56.7 % of these species live in shallow coral reefs, 33.7 % inside the fringing reef, 28.0 % in shallow rocky reefs, 16.8 % on sand bottoms, 14.0 % in deep reefs, 11.9 % on the reef flat, and 11.1 % in estuaries. 63 species are first records for Réunion. Zoogeographically, 65 % of the fish fauna have a widespread Indo-Pacific distribution, while only 2.6 % are Mascarene endemics, and 0.7 % Réunion endemics. The classification of the following species is changed in the present paper: Anguilla labiata (Peters, 1852) [pre- viously A. bengalensis labiata]; Microphis millepunctatus (Kaup, 1856) [previously M. brachyurus millepunctatus]; Epinephelus oceanicus (Lacepède, 1802) [previously E. fasciatus (non Forsskål in Niebuhr, 1775)]; Ostorhinchus fasciatus (White, 1790) [previously Apogon fasciatus]; Mulloidichthys auriflamma (Forsskål in Niebuhr, 1775) [previously Mulloidichthys vanicolensis (non Valenciennes in Cuvier & Valenciennes, 1831)]; Stegastes luteobrun- neus (Smith, 1960) [previously S. -
Molecular Phylogenetic Analysis of the AIG Family in Vertebrates
G C A T T A C G G C A T genes Communication Molecular Phylogenetic Analysis of the AIG Family in Vertebrates Yuqi Huang 1,†, Minghao Sun 2,† , Lenan Zhuang 2,* and Jin He 1,* 1 Department of Animal Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] 2 Department of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] * Correspondence: [email protected] (L.Z.); [email protected] (J.H.); Tel.: +86-15-8361-28207 (L.Z.); +86-17-6818-74822 (J.H.) † These authors contributed equally to this work. Abstract: Androgen-inducible genes (AIGs), which can be regulated by androgen level, constitute a group of genes characterized by the presence of the AIG/FAR-17a domain in its protein sequence. Previous studies on AIGs demonstrated that one member of the gene family, AIG1, is involved in many biological processes in cancer cell lines and that ADTRP is associated with cardiovascular diseases. It has been shown that the numbers of AIG paralogs in humans, mice, and zebrafish are 2, 2, and 3, respectively, indicating possible gene duplication events during vertebrate evolution. Therefore, classifying subgroups of AIGs and identifying the homologs of each AIG member are important to characterize this novel gene family further. In this study, vertebrate AIGs were phyloge- netically grouped into three major clades, ADTRP, AIG1, and AIG-L, with AIG-L also evident in an outgroup consisting of invertebrsate species. In this case, AIG-L, as the ancestral AIG, gave rise to ADTRP and AIG1 after two rounds of whole-genome duplications during vertebrate evolution.