Performance and Power Analysis for High Performance Computation Benchmarks
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CUDA by Example
CUDA by Example AN INTRODUCTION TO GENERAL-PURPOSE GPU PROGRAMMING JASON SaNDERS EDWARD KANDROT Upper Saddle River, NJ • Boston • Indianapolis • San Francisco New York • Toronto • Montreal • London • Munich • Paris • Madrid Capetown • Sydney • Tokyo • Singapore • Mexico City Sanders_book.indb 3 6/12/10 3:15:14 PM Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and the publisher was aware of a trademark claim, the designations have been printed with initial capital letters or in all capitals. The authors and publisher have taken care in the preparation of this book, but make no expressed or implied warranty of any kind and assume no responsibility for errors or omissions. No liability is assumed for incidental or consequential damages in connection with or arising out of the use of the information or programs contained herein. NVIDIA makes no warranty or representation that the techniques described herein are free from any Intellectual Property claims. The reader assumes all risk of any such claims based on his or her use of these techniques. The publisher offers excellent discounts on this book when ordered in quantity for bulk purchases or special sales, which may include electronic versions and/or custom covers and content particular to your business, training goals, marketing focus, and branding interests. For more information, please contact: U.S. Corporate and Government Sales (800) 382-3419 [email protected] For sales outside the United States, please contact: International Sales [email protected] Visit us on the Web: informit.com/aw Library of Congress Cataloging-in-Publication Data Sanders, Jason. -
Bitfusion Guide to CUDA Installation Bitfusion Guides Bitfusion: Bitfusion Guide to CUDA Installation
WHITE PAPER–OCTOBER 2019 Bitfusion Guide to CUDA Installation Bitfusion Guides Bitfusion: Bitfusion Guide to CUDA Installation Table of Contents Purpose 3 Introduction 3 Some Sources of Confusion 4 So Many Prerequisites 4 Installing the NVIDIA Repository 4 Installing the NVIDIA Driver 6 Installing NVIDIA CUDA 6 Installing cuDNN 7 Speed It Up! 8 Upgrading CUDA 9 WHITE PAPER | 2 Bitfusion: Bitfusion Guide to CUDA Installation Purpose Bitfusion FlexDirect provides a GPU virtualization solution. It allows you to use the GPUs, or even partial GPUs (e.g., half of a GPU, or a quarter, or one-third of a GPU), on different servers as if they were attached to your local machine, a machine on which you can now run a CUDA application even though it has no GPUs of its own. Since Bitfusion FlexDirect software and ML/AI (machine learning/artificial intelligence) applications require other CUDA libraries and drivers, this document describes how to install the prerequisite software for both Bitfusion FlexDirect and for various ML/AI applications. If you already have your CUDA drivers and libraries installed, you can skip ahead to the chapter on installing Bitfusion FlexDirect. This document gives instruction and examples for Ubuntu, Red Hat, and CentOS systems. Introduction Bitfusion’s software tool is called FlexDirect. FlexDirect easily installs with a single command, but installing the third-party prerequisite drivers and libraries, plus any application and its prerequisite software, can seem a Gordian Knot to users new to CUDA code and ML/AI applications. We will begin untangling the knot with a table of the components involved. -
Accelerating HPL Using the Intel Xeon Phi 7120P Coprocessors
Accelerating HPL using the Intel Xeon Phi 7120P Coprocessors Authors: Saeed Iqbal and Deepthi Cherlopalle The Intel Xeon Phi Series can be used to accelerate HPC applications in the C4130. The highly parallel architecture on Phi Coprocessors can boost the parallel applications. These coprocessors work seamlessly with the standard Xeon E5 processors series to provide additional parallel hardware to boost parallel applications. A key benefit of the Xeon Phi series is that these don’t require redesigning the application, only compiler directives are required to be able to use the Xeon Phi coprocessor. Fundamentally, the Intel Xeon series are many-core parallel processors, with each core having a dedicated L2 cache. The cores are connected through a bi-directional ring interconnects. Intel offers a complete set of development, performance monitoring and tuning tools through its Parallel Studio and VTune. The goal is to enable HPC users to get advantage from the parallel hardware with minimal changes to the code. The Xeon Phi has two modes of operation, the offload mode and native mode. In the offload mode designed parts of the application are “offloaded” to the Xeon Phi, if available in the server. Required code and data is copied from a host to the coprocessor, processing is done parallel in the Phi coprocessor and results move back to the host. There are two kinds of offload modes, non-shared and virtual-shared memory modes. Each offload mode offers different levels of user control on data movement to and from the coprocessor and incurs different types of overheads. In the native mode, the application runs on both host and Xeon Phi simultaneously, communication required data among themselves as need. -
Parallel Architectures and Algorithms for Large-Scale Nonlinear Programming
Parallel Architectures and Algorithms for Large-Scale Nonlinear Programming Carl D. Laird Associate Professor, School of Chemical Engineering, Purdue University Faculty Fellow, Mary Kay O’Connor Process Safety Center Laird Research Group: http://allthingsoptimal.com Landscape of Scientific Computing 10$ 1$ 50%/year 20%/year Clock&Rate&(GHz)& 0.1$ 0.01$ 1980$ 1985$ 1990$ 1995$ 2000$ 2005$ 2010$ Year& [Steven Edwards, Columbia University] 2 Landscape of Scientific Computing Clock-rate, the source of past speed improvements have stagnated. Hardware manufacturers are shifting their focus to energy efficiency (mobile, large10" data centers) and parallel architectures. 12" 10" 1" 8" 6" #"of"Cores" Clock"Rate"(GHz)" 0.1" 4" 2" 0.01" 0" 1980" 1985" 1990" 1995" 2000" 2005" 2010" Year" 3 “… over a 15-year span… [problem] calculations improved by a factor of 43 million. [A] factor of roughly 1,000 was attributable to faster processor speeds, … [yet] a factor of 43,000 was due to improvements in the efficiency of software algorithms.” - attributed to Martin Grotschel [Steve Lohr, “Software Progress Beats Moore’s Law”, New York Times, March 7, 2011] Landscape of Computing 5 Landscape of Computing High-Performance Parallel Architectures Multi-core, Grid, HPC clusters, Specialized Architectures (GPU) 6 Landscape of Computing High-Performance Parallel Architectures Multi-core, Grid, HPC clusters, Specialized Architectures (GPU) 7 Landscape of Computing data VM iOS and Android device sales High-Performance have surpassed PC Parallel Architectures iPhone performance -
Intel Cirrascale and Petrobras Case Study
Case Study Intel® Xeon Phi™ Coprocessor Intel® Xeon® Processor E5 Family Big Data Analytics High-Performance Computing Energy Accelerating Energy Exploration with Intel® Xeon Phi™ Coprocessors Cirrascale delivers scalable performance by combining its innovative PCIe switch riser with Intel® processors and coprocessors To find new oil and gas reservoirs, organizations are focusing exploration in the deep sea and in complex geological formations. As energy companies such as Petrobras work to locate and map those reservoirs, they need powerful IT resources that can process multiple iterations of seismic models and quickly deliver precise results. IT solution provider Cirrascale began building systems with Intel® Xeon Phi™ coprocessors to provide the scalable performance Petrobras and other customers need while holding down costs. Challenges • Enable deep-sea exploration. Improve reservoir mapping accuracy with detailed seismic processing. • Accelerate performance of seismic applications. Speed time to results while controlling costs. • Improve scalability. Enable server performance and density to scale as data volumes grow and workloads become more demanding. Solution • Custom Cirrascale servers with Intel Xeon Phi coprocessors. Employ new compute blades with the Intel® Xeon® processor E5 family and Intel Xeon Phi coprocessors. Cirrascale uses custom PCIe switch risers for fast, peer-to-peer communication among coprocessors. Technology Results • Linear scaling. Performance increases linearly as Intel Xeon Phi coprocessors “Working together, the are added to the system. Intel® Xeon® processors • Simplified development model. Developers no longer need to spend time optimizing data placement. and Intel® Xeon Phi™ coprocessors help Business Value • Faster, better analysis. More detailed and accurate modeling in less time HPC applications shed improves oil and gas exploration. -
Microbenchmarks in Big Data
M Microbenchmark Overview Microbenchmarks constitute the first line of per- Nicolas Poggi formance testing. Through them, we can ensure Databricks Inc., Amsterdam, NL, BarcelonaTech the proper and timely functioning of the different (UPC), Barcelona, Spain individual components that make up our system. The term micro, of course, depends on the prob- lem size. In BigData we broaden the concept Synonyms to cover the testing of large-scale distributed systems and computing frameworks. This chap- Component benchmark; Functional benchmark; ter presents the historical background, evolution, Test central ideas, and current key applications of the field concerning BigData. Definition Historical Background A microbenchmark is either a program or routine to measure and test the performance of a single Origins and CPU-Oriented Benchmarks component or task. Microbenchmarks are used to Microbenchmarks are closer to both hardware measure simple and well-defined quantities such and software testing than to competitive bench- as elapsed time, rate of operations, bandwidth, marking, opposed to application-level – macro or latency. Typically, microbenchmarks were as- – benchmarking. For this reason, we can trace sociated with the testing of individual software microbenchmarking influence to the hardware subroutines or lower-level hardware components testing discipline as can be found in Sumne such as the CPU and for a short period of time. (1974). Furthermore, we can also find influence However, in the BigData scope, the term mi- in the origins of software testing methodology crobenchmarking is broadened to include the during the 1970s, including works such cluster – group of networked computers – acting as Chow (1978). One of the first examples of as a single system, as well as the testing of a microbenchmark clearly distinguishable from frameworks, algorithms, logical and distributed software testing is the Whetstone benchmark components, for a longer period and larger data developed during the late 1960s and published sizes. -
(GPU) Computing
Graphics Processing Unit (GPU) computing This section describes the graphics processing unit (GPU) computing feature of OptiSystem. Note: The GPU computing feature is only configurable with OptiSystem Version 11 (or higher) What is GPU computing? GPU computing or GPGPU takes advantage of a computer’s grahics processing card to augment the speed of general purpose scientific and engineering computing tasks. Compute Unified Device Architecture (CUDA) implementation for OptiSystem NVIDIA revolutionized the GPGPU and accelerated computing when it introduced a new parallel computing architecture: Compute Unified Device Architecture (CUDA). CUDA is both a hardware and software architecture for issuing and managing computations within the GPU, thus allowing it to operate as a generic data-parallel computing device. CUDA allows the programmer to take advantage of the parallel computing power of an NVIDIA graphics card to perform general purpose computations. OptiSystem CUDA implementation The OptiSystem model for GPU computing involves using a central processing unit (CPU) and GPU together in a heterogeneous co-processing computing model. The sequential part of the application runs on the CPU and the computationally-intensive part is accelerated by the GPU. In the OptiSystem GPU programming model, the application has been modified to map the compute-intensive kernels to the GPU. The remainder of the application remains within the CPU. CUDA parallel computing architecture The NVIDIA CUDA parallel computing architecture is enabled on GeForce®, Quadro®, and Tesla™ products. Whereas GeForce and Quadro are designed for consumer graphics and professional visualization respectively, the Tesla product family is designed ground-up for parallel computing and offers exclusive computing 3 GRAPHICS PROCESSING UNIT (GPU) COMPUTING features, and is the recommended choice for the OptiSystem GPU. -
Examining the Viability of FPGA Supercomputing
1 Examining the Viability of FPGA Supercomputing Stephen D. Craven and Peter Athanas Bradley Department of Electrical and Computer Engineering Virginia Polytechnic Institute and State University Blacksburg, VA 24061 USA email: {scraven,athanas}@vt.edu Abstract—For certain applications, custom computational hardware created using field programmable gate arrays (FPGAs) produces significant performance improvements over processors, leading some in academia and industry to call for the inclusion of FPGAs in supercomputing clusters. This paper presents a comparative analysis of FPGAs and traditional processors, focusing on floating- point performance and procurement costs, revealing economic hurdles in the adoption of FPGAs for general High-Performance Computing (HPC). Index Terms— computational accelerator, digital arithmetic, Field programmable gate arrays, high- performance computing, supercomputers. I. INTRODUCTION Supercomputers have experienced a recent resurgence, fueled by government research dollars and the development of low-cost supercomputing clusters. Unlike the Massively Parallel Processor (MPP) designs found in Cray and CDC machines of the 70s and 80s, featuring proprietary processor architectures, many modern supercomputing clusters are constructed from commodity PC processors, significantly reducing procurement costs. In an effort to improve performance, several companies offer machines that place one or more FPGAs in each node of the cluster. Configurable logic devices, of which FPGAs are one example, permit the device’s hardware to be programmed multiple times after manufacture. A wide body of research over two decades has repeatedly demonstrated significant performance improvements for certain classes of applications when implemented within an FPGA’s configurable logic [1]. Applications well suited to speed-up by FPGAs typically exhibit massive parallelism and small integer or fixed-point data types. -
UNIT 8B a Full Adder
UNIT 8B Computer Organization: Levels of Abstraction 15110 Principles of Computing, 1 Carnegie Mellon University - CORTINA A Full Adder C ABCin Cout S in 0 0 0 A 0 0 1 0 1 0 B 0 1 1 1 0 0 1 0 1 C S out 1 1 0 1 1 1 15110 Principles of Computing, 2 Carnegie Mellon University - CORTINA 1 A Full Adder C ABCin Cout S in 0 0 0 0 0 A 0 0 1 0 1 0 1 0 0 1 B 0 1 1 1 0 1 0 0 0 1 1 0 1 1 0 C S out 1 1 0 1 0 1 1 1 1 1 ⊕ ⊕ S = A B Cin ⊕ ∧ ∨ ∧ Cout = ((A B) C) (A B) 15110 Principles of Computing, 3 Carnegie Mellon University - CORTINA Full Adder (FA) AB 1-bit Cout Full Cin Adder S 15110 Principles of Computing, 4 Carnegie Mellon University - CORTINA 2 Another Full Adder (FA) http://students.cs.tamu.edu/wanglei/csce350/handout/lab6.html AB 1-bit Cout Full Cin Adder S 15110 Principles of Computing, 5 Carnegie Mellon University - CORTINA 8-bit Full Adder A7 B7 A2 B2 A1 B1 A0 B0 1-bit 1-bit 1-bit 1-bit ... Cout Full Full Full Full Cin Adder Adder Adder Adder S7 S2 S1 S0 AB 8 ⁄ ⁄ 8 C 8-bit C out FA in ⁄ 8 S 15110 Principles of Computing, 6 Carnegie Mellon University - CORTINA 3 Multiplexer (MUX) • A multiplexer chooses between a set of inputs. D1 D 2 MUX F D3 D ABF 4 0 0 D1 AB 0 1 D2 1 0 D3 1 1 D4 http://www.cise.ufl.edu/~mssz/CompOrg/CDAintro.html 15110 Principles of Computing, 7 Carnegie Mellon University - CORTINA Arithmetic Logic Unit (ALU) OP 1OP 0 Carry In & OP OP 0 OP 1 F 0 0 A ∧ B 0 1 A ∨ B 1 0 A 1 1 A + B http://cs-alb-pc3.massey.ac.nz/notes/59304/l4.html 15110 Principles of Computing, 8 Carnegie Mellon University - CORTINA 4 Flip Flop • A flip flop is a sequential circuit that is able to maintain (save) a state. -
Massively Parallel Computing with CUDA
Massively Parallel Computing with CUDA Antonino Tumeo Politecnico di Milano 1 GPUs have evolved to the point where many real world applications are easily implemented on them and run significantly faster than on multi-core systems. Future computing architectures will be hybrid systems with parallel-core GPUs working in tandem with multi-core CPUs. Jack Dongarra Professor, University of Tennessee; Author of “Linpack” Why Use the GPU? • The GPU has evolved into a very flexible and powerful processor: • It’s programmable using high-level languages • It supports 32-bit and 64-bit floating point IEEE-754 precision • It offers lots of GFLOPS: • GPU in every PC and workstation What is behind such an Evolution? • The GPU is specialized for compute-intensive, highly parallel computation (exactly what graphics rendering is about) • So, more transistors can be devoted to data processing rather than data caching and flow control ALU ALU Control ALU ALU Cache DRAM DRAM CPU GPU • The fast-growing video game industry exerts strong economic pressure that forces constant innovation GPUs • Each NVIDIA GPU has 240 parallel cores NVIDIA GPU • Within each core 1.4 Billion Transistors • Floating point unit • Logic unit (add, sub, mul, madd) • Move, compare unit • Branch unit • Cores managed by thread manager • Thread manager can spawn and manage 12,000+ threads per core 1 Teraflop of processing power • Zero overhead thread switching Heterogeneous Computing Domains Graphics Massive Data GPU Parallelism (Parallel Computing) Instruction CPU Level (Sequential -
Overview of the SPEC Benchmarks
9 Overview of the SPEC Benchmarks Kaivalya M. Dixit IBM Corporation “The reputation of current benchmarketing claims regarding system performance is on par with the promises made by politicians during elections.” Standard Performance Evaluation Corporation (SPEC) was founded in October, 1988, by Apollo, Hewlett-Packard,MIPS Computer Systems and SUN Microsystems in cooperation with E. E. Times. SPEC is a nonprofit consortium of 22 major computer vendors whose common goals are “to provide the industry with a realistic yardstick to measure the performance of advanced computer systems” and to educate consumers about the performance of vendors’ products. SPEC creates, maintains, distributes, and endorses a standardized set of application-oriented programs to be used as benchmarks. 489 490 CHAPTER 9 Overview of the SPEC Benchmarks 9.1 Historical Perspective Traditional benchmarks have failed to characterize the system performance of modern computer systems. Some of those benchmarks measure component-level performance, and some of the measurements are routinely published as system performance. Historically, vendors have characterized the performances of their systems in a variety of confusing metrics. In part, the confusion is due to a lack of credible performance information, agreement, and leadership among competing vendors. Many vendors characterize system performance in millions of instructions per second (MIPS) and millions of floating-point operations per second (MFLOPS). All instructions, however, are not equal. Since CISC machine instructions usually accomplish a lot more than those of RISC machines, comparing the instructions of a CISC machine and a RISC machine is similar to comparing Latin and Greek. 9.1.1 Simple CPU Benchmarks Truth in benchmarking is an oxymoron because vendors use benchmarks for marketing purposes. -
Hypervisors Vs. Lightweight Virtualization: a Performance Comparison
2015 IEEE International Conference on Cloud Engineering Hypervisors vs. Lightweight Virtualization: a Performance Comparison Roberto Morabito, Jimmy Kjällman, and Miika Komu Ericsson Research, NomadicLab Jorvas, Finland [email protected], [email protected], [email protected] Abstract — Virtualization of operating systems provides a container and alternative solutions. The idea is to quantify the common way to run different services in the cloud. Recently, the level of overhead introduced by these platforms and the lightweight virtualization technologies claim to offer superior existing gap compared to a non-virtualized environment. performance. In this paper, we present a detailed performance The remainder of this paper is structured as follows: in comparison of traditional hypervisor based virtualization and Section II, literature review and a brief description of all the new lightweight solutions. In our measurements, we use several technologies and platforms evaluated is provided. The benchmarks tools in order to understand the strengths, methodology used to realize our performance comparison is weaknesses, and anomalies introduced by these different platforms in terms of processing, storage, memory and network. introduced in Section III. The benchmark results are presented Our results show that containers achieve generally better in Section IV. Finally, some concluding remarks and future performance when compared with traditional virtual machines work are provided in Section V. and other recent solutions. Albeit containers offer clearly more dense deployment of virtual machines, the performance II. BACKGROUND AND RELATED WORK difference with other technologies is in many cases relatively small. In this section, we provide an overview of the different technologies included in the performance comparison.