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Heterocycles Chem 6352 Heterocycles Chem 6352 Heterocyclic Nomenclature (adapted from: bruckner.chem.uconn.edu/PDFfiles/hetshort.pdf and from Gilchrist, T. L. Heterocyclic Chemistry; Longman; London, 1992) The standard method for naming heterocyclic rings is the Hantzsch-Widman nomenclature system. A heterocycle is a ring containing at least one atom that is not carbon: “hetero” means “different.” Nitrogen, oxygen, and sulfur are the primary elements seen in common heterocycles. Heterocycles may be aromatic or not aromatic, but aromatic heterocycles are often called “heteroaryls.” Names in the Hantzsch-Widman system provide data relating to several categories. First, the identity of the heteroatom present in the ring is established by the use of different prefixes for each type. The three prefixes are oxa-, thia-, and aza- for oxygen, sulfur, and nitrogen, respectively. Second, numbers assigned to the atom denote heteroatom position. Third, the size of the ring and the degree of unsaturation is described by the suffix at the end. Table. Common Hantzsch-Widman suffixes. ring size unsaturated ring with unsaturated ring with N saturated ring with only saturated ring with N only O or S O or S 3 -irene -irine -irane -iridine 4 -ete -ete -etane -etidine 5 -ole -ole -olane -olidine 6 -ine -ine -inane (-ane) -inane (-ane) 7 -epine -epine -epane -epane 8 -ocine -ocine -ocane -ocane 9 -onine -onine -onane -onane 10 -ecine -ecine -ecane -ecane Examples of ring naming: H N Aziridine: This ring contains a nitrogen (prefix is aza-) and is a completely saturated three-membered ring (-iridine). Rings that contain a nitrogen require a designated suffix. When combining the prefixes and suffixes, two vowels can end up together. In this case that would be azairidine. When this happens, drop the vowel on the end of the first part. HN O 1,2-Oxazetidine: This ring contains nitrogen (aza-) and oxygen (oxa-) and is a fully saturated four-membered ring (-etidine). Atom prefixes have a strict order in which they are to be listed. For the three atoms we will see, the order is oxygen followed by sulfur followed by nitrogen. So, after dropping the appropriate vowels, we get oxazetidine. Note that if there are two atom prefixes, vowels will be dropped by the earlier prefix. The numbers are placed in order of the prefixes with priority of the numbers being the same as the order of the prefixes. Oxygen is in position 1, and nitrogen is in position 2. O N N 1,2,5-Oxadiazole: This ring has both nitrogen (aza-) and oxygen (oxa-). Unsaturated five-membered rings with nitrogen have the –ole suffix. The presence of two nitrogens requires a di- in front of aza-. Note that the ʻaʼ in oxa- is not dropped since there are not two vowels together. Oxygen is higher priority than nitrogen, so it is in position 1 by default. The two nitrogens are therefore at positions 2 and 5. O S 1,3-Oxathiolane: Prefixes of oxa- and thia- with a suffix of –olane initially gives oxathiolane. Oxygen takes priority in numbering to give 1,3-oxathiolane. Not all heterocyclic rings follow the Hantzsch-Widman rules listed above, typically because they have established common names. These trivial names typically show traces of the systematic nomenclature, but do not completely follow the rules. Heterocycles O H H H O S N N N O S HN HN NH N N oxirane/ thiirane aziridine azirine diaziridine diazirine oxetane thietane azetidine !-lactam epoxide H H H O O S S N N N N tetrahydrofuran furan thiolane thiophene pyrrolidine pyrrole 3-pyrroline 2-H-pyrrole THF (uncommon) O O O S N N N S H H benzofuran coumaran isobenzofuran benzothiophene dibenzothiophene indoline indole indolinine (uncommon) O O O O NH N N N N N H H H N H oxindole indoxyl isatin isoindole indolizine pyrrolizine carbazole O H H N N N N N O O S S O NH O NH O N O S N S HN NH HN N HN N HN HN N dioxolane dithiolane oxazolidine oxazolidinone oxazole isoxazole thiazole isothiazole imidazolidine 2-imidazoline imidazole pyrazolidine 2-pyrazoline pyrazole N O N N N N N N N O O O S N N N H H H benzodioxole benzoxazole indoxazine benzothiazole benzimidazole 1H-indazole purine N N S N N N O N HN N HN N N N N N N N N N N NH H N N 1,2,3-oxadiazole 1,3,4-thiadiazole 1,2,3-triazole 1,2,4-triazole tetrazole benzotriazole quinuclidine diazabicyclooctane diazabicycloundecane DABCO DBU H H O O O O N N N N N O N N Tetrahydropyran Dihydropyran 4H-pyran 2H-pyran piperidine pyridine picoline lutidine collidine pyridone acridine THP DHP O O N N N O O O O N N N O H H chromene coumarin isocoumarin xanthene tetrahydroquinoline quinoline isoquinoline quinolone 4H-quinolizine quinolizinium O S H O S N N N N N O O S S S S N N N N N N N N O N O S N S N N H H H 1,4-dioxane morpholine paraformaldehyde 1,4-dithiane 1,3-dithiane thiomorpholine trithiane piperazine pyrazine pyrimidine pyridazine 1,3,5-triazine tetrazine N N N N N N N N N N N N N N N N H 1,8-naphthyridine quinoxaline quinazoline cinnoline phthalazine !-carboline bipyridyl cyclazine julolidine O S H N N N N O S NH N N H H N N N N phenoxazine phenothiazine phenazine pteridine oxepine thiepin azepine benzodiazepine Examples of Biologically Relevant Heterocycles O NH O O O NH2 2 HN HN N HN NH N N NH2 N O N O N O N O N O H2N N NH2 N N H H H H niacin nicotine thymine uracil cytosine cyanuric acid melamine O O NH2 O H H H N N N N N HN N HN O N N N N H N N N O N O N 2 H H adenine guanine caffeine uric acid CO2H NH2 HO NH2 O NH2 N N N H H H tryptophan serotonin melatonin O Et N N 2 N N H H NH HN NH HN H H N N N H lysergic acid diethyl amide porphyrinogen porphyrin LSD .
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