Cophorticultura 1(2019)
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Psychrophilic Fungi from the World's Roof
Persoonia 34, 2015: 100–112 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685878 Psychrophilic fungi from the world’s roof M. Wang1,2, X. Jiang3, W. Wu3, Y. Hao1, Y. Su1, L. Cai1, M. Xiang1, X. Liu1 Key words Abstract During a survey of cold-adapted fungi in alpine glaciers on the Qinghai-Tibet Plateau, 1 428 fungal isolates were obtained of which 150 species were preliminary identified. Phoma sclerotioides and Pseudogymnoascus pan- glaciers norum were the most dominant species. Psychrotolerant species in Helotiales (Leotiomycetes, Ascomycota) were Phoma sclerotioides studied in more detail as they represented the most commonly encountered group during this investigation. Two Pseudogymnoascus pannorum phylogenetic trees were constructed based on the partial large subunit nrDNA (LSU) to infer the taxonomic place- Psychrophila ments of these strains. Our strains nested in two well-supported major clades, which represented Tetracladium and psychrotolerant a previously unknown lineage. The unknown lineage is distant to any other currently known genera in Helotiales. Tetracladium Psychrophila gen. nov. was therefore established to accommodate these strains which are characterised by globose or subglobose conidia formed from phialides on short or reduced conidiophores. Our analysis also showed that an LSU-based phylogeny is insufficient in differentiating strains at species level. Additional analyses using combined sequences of ITS+TEF1+TUB regions were employed to further investigate the phylogenetic relationships of these strains. Together with the recognisable morphological distinctions, six new species (i.e. P. antarctica, P. lutea, P. oli- vacea, T. ellipsoideum, T. globosum and T. psychrophilum) were described. Our preliminary investigation indicates a high diversity of cold-adapted species in nature, and many of them may represent unknown species. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
A Multigene Phylogeny Toward a New Phylogenetic Classification of Leotiomycetes Peter R
Johnston et al. IMA Fungus (2019) 10:1 https://doi.org/10.1186/s43008-019-0002-x IMA Fungus RESEARCH Open Access A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes Peter R. Johnston1* , Luis Quijada2, Christopher A. Smith1, Hans-Otto Baral3, Tsuyoshi Hosoya4, Christiane Baschien5, Kadri Pärtel6, Wen-Ying Zhuang7, Danny Haelewaters2,8, Duckchul Park1, Steffen Carl5, Francesc López-Giráldez9, Zheng Wang10 and Jeffrey P. Townsend10 Abstract Fungi in the class Leotiomycetes are ecologically diverse, including mycorrhizas, endophytes of roots and leaves, plant pathogens, aquatic and aero-aquatic hyphomycetes, mammalian pathogens, and saprobes. These fungi are commonly detected in cultures from diseased tissue and from environmental DNA extracts. The identification of specimens from such character-poor samples increasingly relies on DNA sequencing. However, the current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic levels. Consequently, the formal Leotiomycetes classification is frequently poorly congruent with the relationships suggested by DNA sequencing studies. Previous class-wide phylogenies of Leotiomycetes have been based on ribosomal DNA markers, with most of the published multi-gene studies being focussed on particular genera or families. In this paper we collate data available from specimens representing both sexual and asexual morphs from across the genetic breadth of the class, with a focus on generic type species, to present a phylogeny based on up to 15 concatenated genes across 279 specimens. Included in the dataset are genes that were extracted from 72 of the genomes available for the class, including 10 new genomes released with this study. To test the statistical support for the deepest branches in the phylogeny, an additional phylogeny based on 3156 genes from 51 selected genomes is also presented. -
Notes for Genera Update – Ascomycota: 6616-6821 Article
Mycosphere 9(1): 115–140 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/1/2 Copyright © Guizhou Academy of Agricultural Sciences Notes for genera update – Ascomycota: 6616-6821 Wijayawardene NN1,2, Hyde KD2, Divakar PK3, Rajeshkumar KC4, Weerahewa D5, Delgado G6, Wang Y7, Fu L1* 1Shandong Institute of Pomologe, Taian, Shandong Province, 271000, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Departamento de Biologı ´a Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain 4National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology (Fungi) Group, Agharkar Research Institute, Pune, Maharashtra 411 004, India 5Department of Botany, The Open University of Sri Lanka, Nawala, Nugegoda, Sri Lanka 610900 Brittmoore Park Drive Suite G Houston, TX 77041 7Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, People’s Republic of China Wijayawardene NN, Hyde KD, Divakar PK, Rajeshkumar KC, Weerahewa D, Delgado G, Wang Y, Fu L 2018 – Notes for genera update – Ascomycota: 6616-6821. Mycosphere 9(1), 115–140, Doi 10.5943/mycosphere/9/1/2 Abstract Taxonomic knowledge of the Ascomycota, is rapidly changing because of use of molecular data, thus continuous updates of existing taxonomic data with new data is essential. In the current paper, we compile existing data of several genera missing from the recently published “Notes for genera-Ascomycota”. This includes 206 entries. Key words – Asexual genera – Data bases – Sexual genera – Taxonomy Introduction Maintaining updated databases and checklists of genera of fungi is an important and essential task, as it is the base of all taxonomic studies. -
Mycosphere Notes 169–224 Article
Mycosphere 9(2): 271–430 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/2/8 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere notes 169–224 Hyde KD1,2, Chaiwan N2, Norphanphoun C2,6, Boonmee S2, Camporesi E3,4, Chethana KWT2,13, Dayarathne MC1,2, de Silva NI1,2,8, Dissanayake AJ2, Ekanayaka AH2, Hongsanan S2, Huang SK1,2,6, Jayasiri SC1,2, Jayawardena RS2, Jiang HB1,2, Karunarathna A1,2,12, Lin CG2, Liu JK7,16, Liu NG2,15,16, Lu YZ2,6, Luo ZL2,11, Maharachchimbura SSN14, Manawasinghe IS2,13, Pem D2, Perera RH2,16, Phukhamsakda C2, Samarakoon MC2,8, Senwanna C2,12, Shang QJ2, Tennakoon DS1,2,17, Thambugala KM2, Tibpromma, S2, Wanasinghe DN1,2, Xiao YP2,6, Yang J2,16, Zeng XY2,6, Zhang JF2,15, Zhang SN2,12,16, Bulgakov TS18, Bhat DJ20, Cheewangkoon R12, Goh TK17, Jones EBG21, Kang JC6, Jeewon R19, Liu ZY16, Lumyong S8,9, Kuo CH17, McKenzie EHC10, Wen TC6, Yan JY13, Zhao Q2 1 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 A.M.B. Gruppo Micologico Forlivese ‘‘Antonio Cicognani’’, Via Roma 18, Forlı`, Italy 4 A.M.B. Circolo Micologico ‘‘Giovanni Carini’’, C.P. 314, Brescia, Italy 5 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, P.R. China 6 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of national education Ministry of Education, Guizhou University, Guiyang, Guizhou Province 550025, P.R. -
AR TICLE Lessons Learned from Moving to One
IMA FUNGUS · VOLUME 5 · A%/BB$DE./%F/B/%%/ [ ARTICLE #G <HH=K<L#9#G<%/5//O#&O&H./P/BK<#S9A#GT & ! With the changes implemented in the International Code of Nomenclature for algae, fungi and plants, fungi "#$ &[#[ Clonostachys * Nomenclature *6*[ V [&* V= !U * &&[ K !*+ (AEE*E)#Clonostachys <APH./%FS#A.5H./%FSVA%8X./%F INTRODUCTION [ # With the changes implemented in the International Code #*& of Nomenclature for algae, fungi and plants (ICN; McNeill [6 et al. 2012), fungi may no longer have more than one Chalara [!" that “…for a taxon of non- fraxinea 7 et al .//8 9 lichen-forming Ascomycota and Basidiomycota… [all names] *&<* compete for priority” regardless of their particular morph & [ Hymenoscyphus #$%#&only albidus [ H. pseudoalbidus (Queloz & !" [ et al. ./%%# [ * '& * & * ' !" principle of priority does not contribute to the nomenclatural [Chalara stability of fungi, thus exceptions can and should be made to fraxinea .//8 H. pseudoalbidus 2011, must become '[ #[ species? in Hypocreales (Rossman et al. 2013) and Leotiomycetes + (Johnston et al. 2014), I have noticed a number of issues, * * !" species of Chalara is C. fusidioides + Hymenoscyphus is H. fructigenus= [!"[ of these type species, one sees that C. fusidioides and H. The Code Decoded: a user’s guide to fructigenus the International Code of Nomenclature for algae, fungi, and presented by Réblová et al. ./%% plants./%5&!" in one genus, then most Leotiomycetes [ Chalara and Hymenoscyphus ' [ sexual state and others for one or more asexual states, one 6>@et al. (2012) © 2014 International Mycological Association You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: [ Non-commercial: No derivative works: For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. -
Etiologia Da Podridão Olho De Boi Da Maçã No Brasil Bianca Samay
UNIVERSIDADE DE BRASÍLIA INSTITUTO DE CIÊNCIAS BIOLÓGICAS DEPARTAMENTO DE FITOPATOLOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM FITOPATOLOGIA ETIOLOGIA DA PODRIDÃO OLHO DE BOI DA MAÇÃ NO BRASIL BIANCA SAMAY ANGELINO BONFIM BRASÍLIA -DF 2017 BIANCA SAMAY ANGELINO BONFIM ETIOLOGIA DA PODRIDÃO OLHO DE BOI DA MAÇÃ NO BRASIL Dissertação apresentada à Universidade de Brasília como requisito parcial para obtenção do título de Mestre em Fitopatologia pelo Programa de Pós- graduação em Fitopatologia. Orientador Dr. Danilo Batista Pinho, Doutor em Fitopatologia BRASÍLIA - DISTRITO FEDERAL BRASIL 2017 FICHA CATALOGRÁFICA Bonfim, Bianca Samay Angelino. Etiologia da Podridão olho de boi da maçã no Brasil. / Bianca Samay Angelino Bonfim. Brasília, 2017. p. 48. Dissertação de mestrado. Programa de Pós-graduação em Fitopatologia, Universidade de Brasília, Brasília. 1. Maçã – Podridão olho de boi. I. Universidade de Brasília. PPG/FIT. II. Etiologia da Podridão olho de boi da maçã no Brasil. Aos meus pais João Batista e Neuraci, ao meu esposo Flávio, aos meus familiares e amigos, fontes de força e coragem... Dedico! AGRADECIMENTOS Minha maior gratidão nesse momento é a Deus, meu porto seguro... Agradeço aos meus pais, pela educação e ensinamentos, aos meus irmãos Dione e Lucas, por todo amor. Ao meu esposo Flávio, por estar presente em todas as horas, por toda compreensão e ajuda. Aos meus amigos, sem os quais não seria possível a realização desse trabalho, em especial a Thaís Ramos. Agradeço a todos que de alguma forma contribuíram para o término desse trabalho, em especial aos amigos: Bruno Souza, Cristiano da Silva Rodrigues, Camila Pereira de Almeida e Débora Cervieri Guterres. -
Evolution of Helotialean Fungi (Leotiomycetes, Pezizomycotina): a Nuclear Rdna Phylogeny
Molecular Phylogenetics and Evolution 41 (2006) 295–312 www.elsevier.com/locate/ympev Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny Zheng Wang a,¤, Manfred Binder a, Conrad L. Schoch b, Peter R. Johnston c, Joseph W. Spatafora b, David S. Hibbett a a Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA b Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA c Herbarium PDD, Landcare Research, Private bag 92170, Auckland, New Zealand Received 5 December 2005; revised 21 April 2006; accepted 24 May 2006 Available online 3 June 2006 Abstract The highly divergent characters of morphology, ecology, and biology in the Helotiales make it one of the most problematic groups in traditional classiWcation and molecular phylogeny. Sequences of three rDNA regions, SSU, LSU, and 5.8S rDNA, were generated for 50 helotialean fungi, representing 11 out of 13 families in the current classiWcation. Data sets with diVerent compositions were assembled, and parsimony and Bayesian analyses were performed. The phylogenetic distribution of lifestyle and ecological factors was assessed. Plant endophytism is distributed across multiple clades in the Leotiomycetes. Our results suggest that (1) the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited; (2) a new class Geoglossomycetes, including Geoglossum, Trichoglossum, and Sarcoleo- tia, is the basal lineage of the Leotiomyceta; (3) the Leotiomycetes, including the Helotiales, Erysiphales, Cyttariales, Rhytismatales, and Myxotrichaceae, is monophyletic; and (4) nine clades can be recognized within the Helotiales. -
Neofabraea Brasiliensis Fungal Planet Description Sheets 309
308 Persoonia – Volume 35, 2015 Neofabraea brasiliensis Fungal Planet description sheets 309 Fungal Planet 391 – 4 December 2015 Neofabraea brasiliensis Sanhueza & Bogo, sp. nov. Etymology. Name reflects the location where original isolates were col- ITS and β-tubulin II sequences — Sequence data for tub2 lected. and ITS retrieved from GenBank was reviewed for all avail- Classification — Dermateaceae, Helotiales, Leotiomycetes. able strains with more than 88 % homology for ITS and 82 % for tub2. Including the sequences generated in this study, this Conidiogenous cells straight or sinuous, 8–14 × 3–5 µm, more amounted to 343 available strains for the ITS region and 108 or less cylindrical, tapering to narrow apex; usually held on ir- strains for tub2. Strains with sequences available for both regularly branched conidiophores, sometimes arising directly regions were selected for phylogenetic analyses and only from hyphae, sometimes with acropleurogenous conidiogenous the sequences belonging to the Neofabraea genus concept loci. Macroconidia 12–22 × 2.5–3.7 µm, aseptate, oblong- were kept, including those Cryptosporiopsis species that were ellipsoidal, apex rounded to more or less pointed, base slightly recently introduced as new combinations for Neofabraea. The conical. Microconidia mostly 2.5–3.5 × 1–1.5 µm, ellipsoidal to two regions were then concatenated into a single dataset in oblong-ellipsoidal, base slightly conical then truncated; micro- the order of ITS–tub2. Pezicula cinnamomea and Pezicula conidia can be produced in conidial masses with a white, cot- corticola were included as the outgroup. There were 55 strains tony appearance. available to be included in the concatenated alignment including Culture characteristics — Colonies on MA, PDA and V8 are the outgroup; once the identical sequences were removed this 28, 31 and 32 mm diam, respectively, after 15 d at 22 °C. -
Lauriomyces, a New Lineage in the Leotiomycetes with Three New Species
Cryptogamie, Mycologie, 2017, 38 (2): 259-273 © 2017 Adac. Tous droits réservés Lauriomyces,anew lineage in the Leotiomycetes with three new species Sayanh SOMRITHIPOL a*,E.B. Gareth JONES b,A.H. BAHKALI b, Satinee SUETRONG c,Sujinda SOMMAI a,Chalida CHAMOI a, Peter R. JOHNSTON d,Jerry A. COOPER d &Nattawut RUNGJINDAMAI e aMicrobe Interaction and Ecology Laboratory (BMIE), National Center for Genetic Engineering and Biotechnology (BIOTEC), 113Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, Thailand bDepartment of Botany and Microbiology,College of Science, King Saud University,Riyadh 11451, Kingdom of Saudi Arabia, email: [email protected] cFungal BiodiversityLaboratory (BFBD), National Center for Genetic Engineering and Biotechnology (BIOTEC), 113Thailand Science Park, Phaholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand dLandcareResearch, Private Bag 92170, Auckland 1142, New Zealand eDepartment of Biology,Faculty of Science, King Mongkut’sInstitute of Technology Ladkrabang (KMITL), Bangkok, 10520, Thailand Abstract – Lauriomyces is an anamorphic genus comprising nine species, found growing on terrestrial leaf litter and wood in tropicalhabitats. The genus is characterized by solitary or synnematous, pigmented conidiophores bearing acropetal chains of unicellular,hyaline conidia. Amultigene (SSU, LSU &5.8S) analysis of Lauriomyces strains reveal three cryptic new species, which are described, illustrated, and published here: L. acerosus, L. basitruncatus, and L. glumateus spp. nov. Lauriomyces glumateus is characterized by narrowly oval conidia while conidia of L. acerosus are cylindrical with acute ends and those of L. basitruncatus are cylindrical with truncate base. The nine Lauriomyces species sampled form amonophyletic clade in the Leotiomycetes, with high molecular support and all with amorphology typical for the genus. -
European Canker)
National Diagnostic Protocol for Detection of Neonectria ditissima (European canker) PEST STATUS Not present in Australia PROTOCOL NUMBER NDP 21 VERSION NUMBER V1.2 PROTOCOL STATUS Endorsed ISSUE DATE May 2013 REVIEW DATE May 2018 ISSUED BY SPHDS Prepared for the Subcommittee on Plant Health Diagnostic Standards (SPHDS) This version of the National Diagnostic Protocol (NDP) for Neonectria ditissima is current as at the date contained in the version control box on the front of this document. NDPs are updated every 5 years or before this time if required (i.e. when new techniques become available). The most current version of this document is available from the SPHDS website: http://plantbiosecuritydiagnostics.net.au/resource-hub/priority-pest-diagnostic-resources/ Contents 1. Introduction ..................................................................................................................... 1 1.1 Host range ................................................................................................................ 1 2. Taxonomic information .................................................................................................... 2 2.1 Names and Synonyms ............................................................................................. 2 3. Detection ......................................................................................................................... 3 3.1 Plants capable of hosting N. ditissima ...................................................................... 3 3.2 Symptoms -
Neofabraea Actinidiae in New Zealand Kiwifruit Orchards: Current Status and Knowledge Gaps
Kiwifruit pathogens 75 Neofabraea actinidiae in New Zealand kiwifruit orchards: current status and knowledge gaps Joy L. Tyson*, Michael A. Manning, Kerry R. Everett and Robert A. Fullerton e New Zealand Institute for Plant and Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand * Corresponding author: [email protected] Abstract Neofabraea actinidiae (syn. Cryptosporiopsis actinidiae) is a member of a suite of fungi associated with ‘ripe rots’ of kiwifruit. Although it has been recorded regularly from kiwifruit in New Zealand over the past 30–40 years, initially as ‘Cryptosporiopsis sp.’, there is a general lack of knowledge of this fungus. This paper provides a review of the current records and available literature on the taxonomy and biology of the organism, and assesses the knowledge gaps in the disease cycle and epidemiology of N. actinidiae in kiwifruit orchards. The conidia of the fungus are likely to be water borne, infect fruit during or near to flowering, and remain latent until harvest and subsequent ripening. The source of inoculum remains unknown. This review may stimulate new research into this pathogen and give insights into potential control strategies. Keywords Actinidia, Cryptosporiopsis, host range, epidemiology INTRODUCTION vegetative compatibility groups (VCG) in the N. Neofabraea actinidiae (syn. Cryptosporiopsis actinidiae anamorph using nitrate non-utilising actinidiae) is a member of a suite of fungi (Nit) mutants, finding 18 groups from 28 strains. associated with ‘ripe rots’ of kiwifruit (Actinidia The authors concluded that this was consistent spp.). It was first recorded in New Zealand with the re-assortment of five VCG genes during as Myxosporium sp.