Fish Brains: Evolution and Environmental Relationships
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Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011
SGR 129 Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011 DEPARTMENT OF HEALTH AND HUMAN SERVICES PUBLIC HEALTH SERVICE FOOD AND DRUG ADMINISTRATION CENTER FOR FOOD SAFETY AND APPLIED NUTRITION OFFICE OF FOOD SAFETY Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – April 2011 Additional copies may be purchased from: Florida Sea Grant IFAS - Extension Bookstore University of Florida P.O. Box 110011 Gainesville, FL 32611-0011 (800) 226-1764 Or www.ifasbooks.com Or you may download a copy from: http://www.fda.gov/FoodGuidances You may submit electronic or written comments regarding this guidance at any time. Submit electronic comments to http://www.regulations. gov. Submit written comments to the Division of Dockets Management (HFA-305), Food and Drug Administration, 5630 Fishers Lane, Rm. 1061, Rockville, MD 20852. All comments should be identified with the docket number listed in the notice of availability that publishes in the Federal Register. U.S. Department of Health and Human Services Food and Drug Administration Center for Food Safety and Applied Nutrition (240) 402-2300 April 2011 Table of Contents: Fish and Fishery Products Hazards and Controls Guidance • Guidance for the Industry: Fish and Fishery Products Hazards and Controls Guidance ................................ 1 • CHAPTER 1: General Information .......................................................................................................19 • CHAPTER 2: Conducting a Hazard Analysis and Developing a HACCP Plan -
Phylogeny of a Rapidly Evolving Clade: the Cichlid Fishes of Lake Malawi
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5107–5110, April 1999 Evolution Phylogeny of a rapidly evolving clade: The cichlid fishes of Lake Malawi, East Africa (adaptive radiationysexual selectionyspeciationyamplified fragment length polymorphismylineage sorting) R. C. ALBERTSON,J.A.MARKERT,P.D.DANLEY, AND T. D. KOCHER† Department of Zoology and Program in Genetics, University of New Hampshire, Durham, NH 03824 Communicated by John C. Avise, University of Georgia, Athens, GA, March 12, 1999 (received for review December 17, 1998) ABSTRACT Lake Malawi contains a flock of >500 spe- sponsible for speciation, then we expect that sister taxa will cies of cichlid fish that have evolved from a common ancestor frequently differ in color pattern but not morphology. within the last million years. The rapid diversification of this Most attempts to determine the relationships among cichlid group has been attributed to morphological adaptation and to species have used morphological characters, which may be sexual selection, but the relative timing and importance of prone to convergence (8). Molecular sequences normally these mechanisms is not known. A phylogeny of the group provide the independent estimate of phylogeny needed to infer would help identify the role each mechanism has played in the evolutionary mechanisms. The Lake Malawi cichlids, however, evolution of the flock. Previous attempts to reconstruct the are speciating faster than alleles can become fixed within a relationships among these taxa using molecular methods have species (9, 10). The coalescence of mtDNA haplotypes found been frustrated by the persistence of ancestral polymorphisms within populations predates the origin of many species (11). In within species. -
Biology of Chordates Video Guide
Branches on the Tree of Life DVD – CHORDATES Written and photographed by David Denning and Bruce Russell ©2005, BioMEDIA ASSOCIATES (THUMBNAIL IMAGES IN THIS GUIDE ARE FROM THE DVD PROGRAM) .. .. To many students, the phylum Chordata doesn’t seem to make much sense. It contains such apparently disparate animals as tunicates (sea squirts), lancelets, fish and humans. This program explores the evolution, structure and classification of chordates with the main goal to clarify the unity of Phylum Chordata. All chordates possess four characteristics that define the phylum, although in most species, these characteristics can only be seen during a relatively small portion of the life cycle (and this is often an embryonic or larval stage, when the animal is difficult to observe). These defining characteristics are: the notochord (dorsal stiffening rod), a hollow dorsal nerve cord; pharyngeal gills; and a post anal tail that includes the notochord and nerve cord. Subphylum Urochordata The most primitive chordates are the tunicates or sea squirts, and closely related groups such as the larvaceans (Appendicularians). In tunicates, the chordate characteristics can be observed only by examining the entire life cycle. The adult feeds using a ‘pharyngeal basket’, a type of pharyngeal gill formed into a mesh-like basket. Cilia on the gill draw water into the mouth, through the basket mesh and out the excurrent siphon. Tunicates have an unusual heart which pumps by ‘wringing out’. It also reverses direction periodically. Tunicates are usually hermaphroditic, often casting eggs and sperm directly into the sea. After fertilization, the zygote develops into a ‘tadpole larva’. This swimming larva shows the remaining three chordate characters - notochord, dorsal nerve cord and post-anal tail. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
Life History Patterns and Biogeography: An
LIFE HISTORY PATTERNS AND Lynne R. Parenti2 BIOGEOGRAPHY: AN INTERPRETATION OF DIADROMY IN FISHES1 ABSTRACT Diadromy, broadly defined here as the regular movement between freshwater and marine habitats at some time during their lives, characterizes numerous fish and invertebrate taxa. Explanations for the evolution of diadromy have focused on ecological requirements of individual taxa, rarely reflecting a comparative, phylogenetic component. When incorporated into phylogenetic studies, center of origin hypotheses have been used to infer dispersal routes. The occurrence and distribution of diadromy throughout fish (aquatic non-tetrapod vertebrate) phylogeny are used here to interpret the evolution of this life history pattern and demonstrate the relationship between life history and ecology in cladistic biogeography. Cladistic biogeography has been mischaracterized as rejecting ecology. On the contrary, cladistic biogeography has been explicit in interpreting ecology or life history patterns within the broader framework of phylogenetic patterns. Today, in inferred ancient life history patterns, such as diadromy, we see remnants of previously broader distribution patterns, such as antitropicality or bipolarity, that spanned both marine and freshwater habitats. Biogeographic regions that span ocean basins and incorporate ocean margins better explain the relationship among diadromy, its evolution, and its distribution than do biogeographic regions centered on continents. Key words: Antitropical distributions, biogeography, diadromy, eels, -
Nearshore Fish Community Structure in the Southwest Bay
NEARSHORE FISH COMMUNITY STRUCTURE IN THE SOUTHWEST BAY OF FUNDY AND NORTHWEST ATLANTIC: COMPARING ASSEMBLAGES ACROSS MULTIPLE SPATIAL AND TEMPORAL SCALES by Collin Arens B.Sc. (Hon), University of New Brunswick, 2003 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF Master’s of Science In the Graduate Academic Unit of Biology Supervisors: David Methven, Ph.D., Dept of Biology, CRI, UNB Saint John Kelly Munkittrick, Ph.D., Dept of Biology, CRI, UNB Saint John Examining Board: Matthew Litvak, Ph.D., Dept. of Biology, UNB Saint John Keith Dewar, Ph.D., Faculty of Business, UNB Saint John This thesis has been accepted by the Dean of Graduate Studies THE UNIVERSITY OF NEW BRUNSWICK April, 2007 © Collin Arens, 2007 ABSTRACT The purpose of this investigation was to assess seasonal, tidal/diel and regional variation in the nearshore fish assemblage of the southwest Bay of Fundy, as well as identify overlying patterns in taxonomic and functional guild structure throughout coastal shallows of the northwest Atlantic. Within the southwest Bay of Fundy species richness and abundance varied seasonally and were correlated with water temperature exhibiting distinct cold and warm water assemblages throughout the year. Over a 24 hour period greater species richness and abundance were observed among samples collected at low tide, with larger fishes captured at night. Regionally, assemblage structure was largely influenced by habitat type with geographic proximity among sites having little direct influence on the structure observed. Throughout the northwest Atlantic taxonomic structure reflected existing biogeographic provinces with the Labrador, Acadian and Virginian provinces represented, while functional guild structure exhibited latitudinal gradients with respect to ecological type and egg dispersal. -
Appendix a Sarah Tanedo/USFWS Common Tern with Chicks
Appendix A Sarah Tanedo/USFWS Common tern with chicks Animal Species Known or Suspected on Monomoy National Wildlife Refuge Table of Contents Table A.1. Fish Species Known or Suspected at Monomoy National Wildlife Refuge (NWR). ..........A-1 Table A.2. Reptile Species Known or Suspected on Monomoy NWR ............................A-8 Table A.3. Amphibian Species Known or Suspected on Monomoy NWR .........................A-8 Table A.4. Bird Species Known or Suspected on Monomoy NWR ..............................A-9 Table A.5. Mammal Species Known or Suspected on Monomoy NWR.......................... A-27 Table A.6. Butterfly and Moth Species Known or Suspected on Monomoy NWR. .................. A-30 Table A.7. Dragonfly and Damselfly Species Known or Suspected on Monomoy NWR. ............. A-31 Table A.8. Tiger Beetle Species Known or Suspected on Monomoy NWR ....................... A-32 Table A.9. Crustacean Species Known or Suspected on Monomoy NWR. ....................... A-33 Table A.10. Bivalve Species Known or Suspected on Monomoy NWR. ......................... A-34 Table A.11. Miscellaneous Marine Invertebrate Species at Monomoy NWR. .................... A-35 Table A.12. Miscellaneous Terrestrial Invertebrates Known to be Present on Monomoy NWR. ........ A-37 Table A.13. Marine Worms Known or Suspected at Monomoy NWR. .......................... A-37 Literature Cited ................................................................ A-40 Animal Species Known or Suspected on Monomoy National Wildlife Refuge Table A.1. Fish Species Known or Suspected at Monomoy National Wildlife Refuge (NWR). 5 15 4 1 1 2 3 6 6 Common Name Scientific Name Fall (%) (%) Rank Rank NOAA Spring Status Status Listing Federal Fisheries MA Legal Species MA Rarity AFS Status Occurrence Occurrence NALCC Rep. -
Life History Trait Diversity of Native Freshwater Fishes in North America
Ecology of Freshwater Fish 2010: 19: 390–400 Ó 2010 John Wiley & Sons A/S Printed in Malaysia Æ All rights reserved ECOLOGY OF FRESHWATER FISH Life history trait diversity of native freshwater fishes in North America Mims MC, Olden JD, Shattuck ZR, Poff NL. Life history trait diversity of M. C. Mims1, J. D. Olden1, native freshwater fishes in North America. Z. R. Shattuck2,N.L.Poff3 Ecology of Freshwater Fish 2010: 19: 390–400. Ó 2010 John Wiley & 1School of Aquatic and Fishery Sciences, Uni- Sons A ⁄ S versity of Washington, Seattle, WA, USA, 2Department of Biology, Aquatic Station, Texas Abstract – Freshwater fish diversity is shaped by phylogenetic constraints State University-San Marcos, 601 University 3 acting on related taxa and biogeographic constraints operating on regional Drive, San Marcos, TX, USA, Graduate Degree Program in Ecology, Department of Biology, species pools. In the present study, we use a trait-based approach to Colorado State University, Fort Collins, CO, USA examine taxonomic and biogeographic patterns of life history diversity of freshwater fishes in North America (exclusive of Mexico). Multivariate analysis revealed strong support for a tri-lateral continuum model with three end-point strategies defining the equilibrium (low fecundity, high juvenile survivorship), opportunistic (early maturation, low juvenile survivorship), and periodic (late maturation, high fecundity, low juvenile survivorship) life histories. Trait composition and diversity varied greatly Key words: life history strategies; traits; func- between and within major families. Finally, we used occurrence data for tional diversity; freshwater fishes; North America large watersheds (n = 350) throughout the United States and Canada to Meryl C. -
Phylogenetic Perspectives in the Evolution of Parental Care in Ray-Finned Fishes
Evolution, 59(7), 2005, pp. 1570±1578 PHYLOGENETIC PERSPECTIVES IN THE EVOLUTION OF PARENTAL CARE IN RAY-FINNED FISHES JUDITH E. MANK,1,2 DANIEL E. L. PROMISLOW,1 AND JOHN C. AVISE1 1Department of Genetics, University of Georgia, Athens, Georgia 30602 2E-mail: [email protected] Abstract. Among major vertebrate groups, ray-®nned ®shes (Actinopterygii) collectively display a nearly unrivaled diversity of parental care activities. This fact, coupled with a growing body of phylogenetic data for Actinopterygii, makes these ®shes a logical model system for analyzing the evolutionary histories of alternative parental care modes and associated reproductive behaviors. From an extensive literature review, we constructed a supertree for ray-®nned ®shes and used its phylogenetic topology to investigate the evolution of several key reproductive states including type of parental care (maternal, paternal, or biparental), internal versus external fertilization, internal versus external gestation, nest construction behavior, and presence versus absence of sexual dichromatism (as an indicator of sexual selection). Using a comparative phylogenetic approach, we critically evaluate several hypotheses regarding evolutionary pathways toward parental care. Results from maximum parsimony reconstructions indicate that all forms of parental care, including paternal, biparental, and maternal (both external and internal to the female reproductive tract) have arisen repeatedly and independently during ray-®nned ®sh evolution. The most common evolutionary transitions were from external fertilization directly to paternal care and from external fertilization to maternal care via the intermediate step of internal fertilization. We also used maximum likelihood phylogenetic methods to test for statistical correlations and contingencies in the evolution of pairs of reproductive traits. -
Evolution and Diversity of Fish Genomes Venkatesh 589
588 Evolution and diversity of fish genomes Byrappa Venkatesh The ray-finned fishes (‘fishes’) vary widely in genome size, Although traditionally fishes have been the subject morphology and adaptations. Teleosts, which comprise 23,600 of comparative studies, recently there has been an species, constitute >99% of living fishes. The radiation of increased interest in these vertebrates as model organ- teleosts has been attributed to a genome duplication event, isms in genomics and molecular genetics. Indeed, the which is proposed to have occurred in an ancient teleost. But second vertebrate genome to be sequenced completely more evidence is required to support the genome-duplication was that of a pufferfish (Fugu rubripes) [4], the first being hypothesis and to establish a causal relationship between the human genome. The genome of another pufferfish additional genes and teleost diversity. Fish genomes seem to be (Tetraodon nigroviridis) is essentially complete, and that ‘plastic’ in comparison with other vertebrate genomes because of the zebrafish (Danio rerio) is nearing completion. The genetic changes, such as polyploidization, gene duplications, genome of a fourth fish, medaka (Oryzias latipes), is also gain of spliceosomal introns and speciation, are more being sequenced. frequent in fishes. The analyses of the fish genome sequences have provided Addresses useful information for understanding the structure, func- Institute of Molecular and Cell Biology 30, Medical Drive, Singapore tion and evolution of vertebrate genes and genomes. In 117609, Singapore this review, I discuss the insights gained from recent e-mail: [email protected] studies on the evolution of fish genomes. Current Opinion in Genetics & Development 2003, 13:588–592 Genome size of fishes Fish genomes vary widely in size, from 0.39 pg to >5 pg of This review comes from a themed issue on DNA per haploid cell (Figure 2), with a modal value of Genomes and evolution 1 pg (equivalent to 1000 Mb). -
Download Vol. 56, No. 3
BULLETIN of the Florida Museum of Natural History TELEOSTEAN OTOLITHS REVEAL DIVERSE PLIO- PLEISTOCENE FISH ASSEMBLAGES IN COASTAL GEORGIA (GLYNN COUNTY) Gary L. Stringer and Dennis Bell Vol. 56, No. 3, pp. 83–108 August 9, 2018 ISSN 2373-9991 UNIVERSITY OF FLORIDA GAINESVILLE The FLORIDA MUSEUM OF NATURAL HISTORY is Florida’s state museum of natural history, dedicated to understanding, preserving, and interpreting biological diversity and cultural heritage. The BULLETIN OF THE FLORIDA MUSEUM OF NATURAL HISTORY is an on-line, open-ac- cess, peer-reviewed journal that publishes results of original research in zoology, botany, paleontology, archaeology, and museum science. New issues of the Bulletin are published at irregular intervals, and volumes are not necessarily completed in any one year. Volumes contain between 150 and 300 pages, sometimes more. The number of papers contained in each volume varies, depending upon the number of pages in each paper, but four numbers is the current standard. Multi-author issues of related papers have been published together, and inquiries about putting together such issues are welcomed. Address all inqui- ries to the Editor of the Bulletin. The electronic edition of this article conforms to the requirements of the amended International Code of Zoological Nomenclature, and hence the new names contained herein are available under that Code. This published work and the nomenclatural acts it contains have been registered in ZooBank, the online registration system for the ICZN (http://zoobank.org/). The ZooBank Publication number for this issue is EB7556D6-823A-470D-813F-8AC26650EC89. Richard C. Hulbert Jr., Editor Bulletin Committee Richard C. -
Morphology and Experimental Hydrodynamics of Fish Fin Control Surfaces George V
556 IEEE JOURNAL OF OCEANIC ENGINEERING, VOL. 29, NO. 3, JULY 2004 Morphology and Experimental Hydrodynamics of Fish Fin Control Surfaces George V. Lauder and Eliot G. Drucker Abstract—Over the past 520 million years, the process of evo- lution has produced a diversity of nearly 25 000 species of fish. This diversity includes thousands of different fin designs which are largely the product of natural selection for locomotor performance. Fish fins can be grouped into two major categories: median and paired fins. Fins are typically supported at their base by a series of segmentally arranged bony or cartilaginous elements, and fish have extensive muscular control over fin conformation. Recent experimental hydrodynamic investigation of fish fin func- tion in a diversity of freely swimming fish (including sharks, stur- geon, trout, sunfish, and surfperch) has demonstrated the role of fins in propulsion and maneuvering. Fish pectoral fins generate either separate or linked vortex rings during propulsion, and the lateral forces generated by pectoral fins are of similar magnitudes to thrust force during slow swimming. Yawing maneuvers involve differentiation of hydrodynamic function between left and right fins via vortex ring reorientation. Low-aspect ratio pectoral fins in Fig. 1. Photograph of bluegill sunfish (Lepomis macrochirus) showing the sharks function to alter body pitch and induce vertical maneuvers configuration of median and paired fins in a representative spiny-finned fish. through conformational changes of the fin trailing edge. The dorsal fin of fish displays a diversity of hydrodynamic function, from a discrete thrust-generating propulsor acting I. INTRODUCTION independently from the body, to a stabilizer generating only side forces.