New Mutant Mouse with Skeletal Deformities Caused by Mutation in Delta Like 3 (Dll3) Gene
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Updates on the Role of Molecular Alterations and NOTCH Signalling in the Development of Neuroendocrine Neoplasms
Journal of Clinical Medicine Review Updates on the Role of Molecular Alterations and NOTCH Signalling in the Development of Neuroendocrine Neoplasms 1,2, 1, 3, 4 Claudia von Arx y , Monica Capozzi y, Elena López-Jiménez y, Alessandro Ottaiano , Fabiana Tatangelo 5 , Annabella Di Mauro 5, Guglielmo Nasti 4, Maria Lina Tornesello 6,* and Salvatore Tafuto 1,* On behalf of ENETs (European NeuroEndocrine Tumor Society) Center of Excellence of Naples, Italy 1 Department of Abdominal Oncology, Istituto Nazionale Tumori, IRCCS Fondazione “G. Pascale”, 80131 Naples, Italy 2 Department of Surgery and Cancer, Imperial College London, London W12 0HS, UK 3 Cancer Cell Metabolism Group. Centre for Haematology, Immunology and Inflammation Department, Imperial College London, London W12 0HS, UK 4 SSD Innovative Therapies for Abdominal Metastases—Department of Abdominal Oncology, Istituto Nazionale Tumori, IRCCS—Fondazione “G. Pascale”, 80131 Naples, Italy 5 Department of Pathology, Istituto Nazionale Tumori, IRCCS—Fondazione “G. Pascale”, 80131 Naples, Italy 6 Unit of Molecular Biology and Viral Oncology, Department of Research, Istituto Nazionale Tumori IRCCS Fondazione Pascale, 80131 Naples, Italy * Correspondence: [email protected] (M.L.T.); [email protected] (S.T.) These authors contributed to this paper equally. y Received: 10 July 2019; Accepted: 20 August 2019; Published: 22 August 2019 Abstract: Neuroendocrine neoplasms (NENs) comprise a heterogeneous group of rare malignancies, mainly originating from hormone-secreting cells, which are widespread in human tissues. The identification of mutations in ATRX/DAXX genes in sporadic NENs, as well as the high burden of mutations scattered throughout the multiple endocrine neoplasia type 1 (MEN-1) gene in both sporadic and inherited syndromes, provided new insights into the molecular biology of tumour development. -
Anti-Lunatic Fringe Antibody (ARG40136)
Product datasheet [email protected] ARG40136 Package: 100 μl anti-Lunatic Fringe antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes Lunatic Fringe Tested Reactivity Hu Tested Application FACS, IHC-P, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name Lunatic Fringe Antigen Species Human Immunogen KLH-conjugated synthetic peptide corresponding to aa. 86-114 of Human Lunatic Fringe. Conjugation Un-conjugated Alternate Names O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase; EC 2.4.1.222; SCDO3; Beta-1,3-N- acetylglucosaminyltransferase lunatic fringe Application Instructions Application table Application Dilution FACS 1:10 - 1:50 IHC-P 1:50 - 1:100 WB 1:1000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control K562 Calculated Mw 42 kDa Properties Form Liquid Purification Purification with Protein A and immunogen peptide. Buffer PBS and 0.09% (W/V) Sodium azide. Preservative 0.09% (W/V) Sodium azide. Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C or below. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. www.arigobio.com 1/3 Note For laboratory research only, not for drug, diagnostic or other use. Bioinformation Gene Symbol LFNG Gene Full Name LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Background This gene is a member of the fringe gene family which also includes radical and manic fringe genes. -
Segmentation in Vertebrates: Clock and Gradient Finally Joined
Downloaded from genesdev.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Segmentation in vertebrates: clock and gradient finally joined Alexander Aulehla1 and Bernhard G. Herrmann2 Max-Planck-Institute for Molecular Genetics, Department of Developmental Genetics, 14195 Berlin, Germany The vertebral column is derived from somites formed by terior (A–P) axis. Somite formation takes place periodi- segmentation of presomitic mesoderm, a fundamental cally in a fixed anterior-to-posterior sequence. process of vertebrate embryogenesis. Models on the In the chick embryo, a new somite is formed approxi- mechanism controlling this process date back some mately every 90 min, whereas in the mouse embryo, the three to four decades. Access to understanding the mo- periodicity varies, dependent on the axial position (Tam lecular control of somitogenesis has been gained only 1981). Classical embryology experiments revealed that recently by the discovery of molecular oscillators (seg- periodicity and directionality of somite formation are mentation clock) and gradients of signaling molecules, controlled by an intrinsic program set off in the cells as as predicted by early models. The Notch signaling path- they are recruited into the psm. For instance, when the way is linked to the oscillator and plays a decisive role in psm is inverted rostro–caudally, somite formation in the inter- and intrasomitic boundary formation. An Fgf8 sig- inverted region proceeds from caudal to rostral, main- naling gradient is involved in somite size control. And taining the original direction (Christ et al. 1974). More- the (canonical) Wnt signaling pathway, driven by Wnt3a, over, neither the transversal bisection nor the isolation appears to integrate clock and gradient in a global of the psm from all surrounding tissues stops the seg- mechanism controlling the segmentation process. -
Delta-Like Protein 3 Prevalence in Small Cell Lung Cancer and DLL3 (SP347) Assay Characteristics
EARLY ONLINE RELEASE Note: This article was posted on the Archives Web site as an Early Online Release. Early Online Release articles have been peer reviewed, copyedited, and reviewed by the authors. Additional changes or corrections may appear in these articles when they appear in a future print issue of the Archives. Early Online Release articles are citable by using the Digital Object Identifier (DOI), a unique number given to every article. The DOI will typically appear at the end of the abstract. The DOI for this manuscript is doi: 10.5858/arpa.2018-0497-OA The final published version of this manuscript will replace the Early Online Release version at the above DOI once it is available. © 2019 College of American Pathologists Original Article Delta-like Protein 3 Prevalence in Small Cell Lung Cancer and DLL3 (SP347) Assay Characteristics Richard S. P. Huang, MD; Burton F. Holmes, PhD; Courtney Powell; Raji V. Marati, PhD; Dusty Tyree, MS; Brittany Admire, PhD; Ashley Streator; Amy E. Hanlon Newell, PhD; Javier Perez, PhD; Deepa Dalvi; Ehab A. ElGabry, MD Context.—Delta-like protein 3 (DLL3) is a protein that is Results.—Cytoplasmic and/or membranous staining was implicated in the Notch pathway. observed in 1040 of 1362 specimens of small cell lung Objective.—To present data on DLL3 prevalence in cancer (76.4%). Homogenous and/or heterogeneous and small cell lung cancer and staining characteristics of the partial and/or circumferential granular staining with varied VENTANA DLL3 (SP347) Assay. In addition, the assay’s immunoreactivity with other neoplastic and nonneoplastic intensities was noted. -
The Regulation of Lunatic Fringe During Somitogenesis
THE REGULATION OF LUNATIC FRINGE DURING SOMITOGENESIS DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Emily T. Shifley ***** The Ohio State University 2009 Dissertation Committee: Approved by Professor Susan Cole, Advisor Professor Christine Beattie _________________________________ Professor Mark Seeger Advisor Graduate Program in Molecular Genetics Professor Michael Weinstein ABSTRACT Somitogenesis is the morphological hallmark of vertebrate segmentation. Somites bud from the presomitic mesoderm (PSM) in a sequential, periodic fashion and give rise to the rib cage, vertebrae, and dermis and muscles of the back. The regulation of somitogenesis is complex. In the posterior region of the PSM, a segmentation clock operates to organize cohorts of cells into presomites, while in the anterior region of the PSM the presomites are patterned into rostral and caudal compartments (R/C patterning). Both of these stages of somitogenesis are controlled, at least in part, by the Notch pathway and Lunatic fringe (Lfng), a glycosyltransferase that modifies the Notch receptor. To dissect the roles played by Lfng during somitogenesis, we created a novel allele that lacks cyclic Lfng expression within the segmentation clock, but that maintains expression during R/C somite patterning (Lfng∆FCE1). Lfng∆FCE1/∆FCE1 mice have severe defects in their anterior vertebrae and rib cages, but relatively normal sacral and tail vertebrae, unlike Lfng knockouts. Segmentation clock function is differentially affected by the ∆FCE1 deletion; during anterior somitogenesis the expression patterns of many clock genes are disrupted, while during posterior somitogenesis, certain clock components have recovered. R/C patterning occurs relatively normally in Lfng∆FCE1/∆FCE1 embryos, likely contributing to the partial phenotype rescue, and confirming that Lfng ii plays separate roles in the two regions of the PSM. -
Neural Development
31 October 2007 NEURAL DEVELOPMENT www.neuraldevelopment.com Analysis of Lrrn1 expression and its relationship to neuromeric boundaries during chick neural development Laura C Andreae et al. Neural Development 2007, 2:22 http://www.neuraldevelopment.com/content/2/1/22 Neural Development BioMed Central Research article Open Access Analysis of Lrrn1 expression and its relationship to neuromeric boundaries during chick neural development LauraCAndreae1,2, Daniela Peukert1, Andrew Lumsden1 and Jonathan D Gilthorpe*1 Address: 1MRC Centre for Developmental Neurobiology, King's College London, New Hunt's House, Guy's Campus, London, UK, SE1 1UL and 2Department of Neurophysiology, National Institute for Medical Research, The Ridgeway, Mill Hill, London, UK, NW7 1AA Email: Laura C Andreae - [email protected]; Daniela Peukert - [email protected]; Andrew Lumsden - [email protected]; Jonathan D Gilthorpe* - [email protected] * Corresponding author Published: 31 October 2007 Received: 26 March 2007 Accepted: 31 October 2007 Neural Development 2007, 2:22 doi:10.1186/1749-8104-2-22 This article is available from: http://www.neuraldevelopment.com/content/2/1/22 © 2007 Andreae et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: The Drosophila leucine-rich repeat proteins Tartan (TRN) and Capricious (CAPS) mediate cell affinity differences during compartition of the wing imaginal disc. This study aims to identify and characterize the expression of a chick orthologue of TRN/CAPS and examine its potential function in relation to compartment boundaries in the vertebrate central nervous system. -
And DLL4-Mediated Notch Signaling Is Essential for Adult Pancreatic Islet Homeostasis
Diabetes Volume 69, May 2020 915 DLL1- and DLL4-Mediated Notch Signaling Is Essential for Adult Pancreatic Islet Homeostasis Marina Rubey,1,2 Nirav Florian Chhabra,1,2 Daniel Gradinger,1,2 Adrián Sanz-Moreno,1 Heiko Lickert,2,3,4 Gerhard K.H. Przemeck,1,2 and Martin Hrabe de Angelis1,2,5 Diabetes 2020;69:915–926 | https://doi.org/10.2337/db19-0795 Genes of the Notch signaling pathway are expressed in with type 2 diabetes (3), sparking investigation into their different cell types and organs at different time points roles in glucose metabolism. The highly conserved D/N during embryonic development and adulthood. The Notch signaling pathway is crucial for embryonic development ligand Delta-like 1 (DLL1) controls the decision between in a wide range of different tissues (4). Although Notch ac- endocrine and exocrine fates of multipotent progenitors in tivity is required during pancreatic development (5), some the developing pancreas, and loss of Dll1 leads to pre- D/N components have also been reported to be active mature endocrine differentiation. However, the role of during adulthood. D/N signaling mediates cell-cycle regu- Delta-Notch signaling in adult tissue homeostasis is not lation via transmembrane-bound ligands (DLL1, DLL3, DLL4, ISLET STUDIES well understood. Here, we describe the spatial expression JAGGED1, and JAGGED2) and receptors (NOTCH1–4). pattern of Notch pathway components in adult murine Studies have shown that DLL1 and DLL4 regulate tissue pancreatic islets and show that DLL1 and DLL4 are renewal and maintain intestinal progenitor cells (6). Fur- specifically expressed in b-cells, whereas JAGGED1 is thermore, NOTCH/NEUROG3 signaling is active in adult expressed in a-cells. -
Examining the Role of Deltalike3 in Notch Signaling During Vertebrate Segmentation
Examining the role of Deltalike3 in Notch Signaling during Vertebrate Segmentation A Senior Honors Thesis Presented in Partial Fulfillment of the Requirements for graduation with distinction in Molecular Genetics in the undergraduate colleges of The Ohio State University by Meaghan Ebetino The Ohio State University June 2008 Project Advisor: Dr. Susan Cole, Department of Molecular Genetics 2 Table of Contents I. Introduction p. 3-22 II. Results p. 22-34 III. Discussion p. 35-39 IV. Materials and Methods p. 39-42 V. References p. 43-44 3 I. Introduction Vertebrae segmentation is an embryological process regulated in part by the Notch signaling pathway. The unperturbed temporal and spatial activities of the genes involved in the Notch signaling pathway are responsible for proper skeletal phenotypes of vertebrates. The activity of Deltalike3 (Dll3), a Notch family member has been suggested to be important in both the clock and patterning activities of the Notch signaling pathway. However, the importance of Dll3 in the clock or patterning activities of the Notch signaling for proper segmentation events to occur has not been examined. Loss of Deltalike3 expression or activity in mice results in severe vertebral abnormalities, which resemble the phenotype of mice that lack the gene Lunatic fringe (Lfng), proposed to be an inhibitor of Notch. Despite the phenotypic evidence suggesting that Dll3 is an inhibitor of Notch like Lfng, there is other conflicting data suggesting that Dll3 may act either as an inhibitor or activator of Notch. My project intends to examine the role of Dll3 as an inhibitor or activator of Notch, to determine whether the Dll3 has a more important role in the clock or patterning activities of Notch signaling, and to analyze the possibility for modifier effects between Dll3 and other Notch family members. -
Comparative Transcriptomics Reveals Similarities and Differences
Seifert et al. BMC Cancer (2015) 15:952 DOI 10.1186/s12885-015-1939-9 RESEARCH ARTICLE Open Access Comparative transcriptomics reveals similarities and differences between astrocytoma grades Michael Seifert1,2,5*, Martin Garbe1, Betty Friedrich1,3, Michel Mittelbronn4 and Barbara Klink5,6,7 Abstract Background: Astrocytomas are the most common primary brain tumors distinguished into four histological grades. Molecular analyses of individual astrocytoma grades have revealed detailed insights into genetic, transcriptomic and epigenetic alterations. This provides an excellent basis to identify similarities and differences between astrocytoma grades. Methods: We utilized public omics data of all four astrocytoma grades focusing on pilocytic astrocytomas (PA I), diffuse astrocytomas (AS II), anaplastic astrocytomas (AS III) and glioblastomas (GBM IV) to identify similarities and differences using well-established bioinformatics and systems biology approaches. We further validated the expression and localization of Ang2 involved in angiogenesis using immunohistochemistry. Results: Our analyses show similarities and differences between astrocytoma grades at the level of individual genes, signaling pathways and regulatory networks. We identified many differentially expressed genes that were either exclusively observed in a specific astrocytoma grade or commonly affected in specific subsets of astrocytoma grades in comparison to normal brain. Further, the number of differentially expressed genes generally increased with the astrocytoma grade with one major exception. The cytokine receptor pathway showed nearly the same number of differentially expressed genes in PA I and GBM IV and was further characterized by a significant overlap of commonly altered genes and an exclusive enrichment of overexpressed cancer genes in GBM IV. Additional analyses revealed a strong exclusive overexpression of CX3CL1 (fractalkine) and its receptor CX3CR1 in PA I possibly contributing to the absence of invasive growth. -
Mouse Dll3: a Novel Divergent Delta Gene Which May Complement the Function of Other Delta Homologues During Early Pattern Formation in the Mouse Embryo
Development 124, 3065-3076 (1997) 3065 Printed in Great Britain © The Company of Biologists Limited 1997 DEV4879 Mouse Dll3: a novel divergent Delta gene which may complement the function of other Delta homologues during early pattern formation in the mouse embryo Sally L. Dunwoodie, Domingos Henrique, Stephen M. Harrison and Rosa S. P. Beddington Department of Mammalian Development, National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK *Author for correspondence (e-mail: [email protected]) SUMMARY Mouse delta-like 3 (Dll3), a novel vertebrate homologue of tion of tissue from the primitive streak and tailbud. A the Drosophila gene Delta was isolated by a subtracted careful comparison of Dll3 and Dll1 expression by double library screen. In Drosphila, the Delta/Notch signalling RNA in situ hybridisation demonstrates that these genes pathway functions in many situations in both embryonic have distinct patterns of expression, but implies that and adult life where cell fate specification occurs. In together they operate in many of the same processes. We addition, a patterning role has been described in the estab- postulate that during somitogenesis Dll3 and Dll1 coordi- lishment of the dorsoventral compartment boundary in the nate in establishing the intersomitic boundaries. We wing imaginal disc. Dll3 is the most divergent Delta confirm that, during neurogenesis in the spinal cord, Dll1 homologue identified to date. We confirm that Dll3 can and Dll3 are expressed by postmitotic cells and suggest that inhibit primary neurogenesis when ectopically expressed in expression is sequential such that cells express Dll1 first Xenopus, suggesting that it can activate the Notch receptor followed by Dll3. -
POGLUT1, the Putative Effector Gene Driven by Rs2293370 in Primary
www.nature.com/scientificreports OPEN POGLUT1, the putative efector gene driven by rs2293370 in primary biliary cholangitis susceptibility Received: 6 June 2018 Accepted: 13 November 2018 locus chromosome 3q13.33 Published: xx xx xxxx Yuki Hitomi 1, Kazuko Ueno2,3, Yosuke Kawai1, Nao Nishida4, Kaname Kojima2,3, Minae Kawashima5, Yoshihiro Aiba6, Hitomi Nakamura6, Hiroshi Kouno7, Hirotaka Kouno7, Hajime Ohta7, Kazuhiro Sugi7, Toshiki Nikami7, Tsutomu Yamashita7, Shinji Katsushima 7, Toshiki Komeda7, Keisuke Ario7, Atsushi Naganuma7, Masaaki Shimada7, Noboru Hirashima7, Kaname Yoshizawa7, Fujio Makita7, Kiyoshi Furuta7, Masahiro Kikuchi7, Noriaki Naeshiro7, Hironao Takahashi7, Yutaka Mano7, Haruhiro Yamashita7, Kouki Matsushita7, Seiji Tsunematsu7, Iwao Yabuuchi7, Hideo Nishimura7, Yusuke Shimada7, Kazuhiko Yamauchi7, Tatsuji Komatsu7, Rie Sugimoto7, Hironori Sakai7, Eiji Mita7, Masaharu Koda7, Yoko Nakamura7, Hiroshi Kamitsukasa7, Takeaki Sato7, Makoto Nakamuta7, Naohiko Masaki 7, Hajime Takikawa8, Atsushi Tanaka 8, Hiromasa Ohira9, Mikio Zeniya10, Masanori Abe11, Shuichi Kaneko12, Masao Honda12, Kuniaki Arai12, Teruko Arinaga-Hino13, Etsuko Hashimoto14, Makiko Taniai14, Takeji Umemura 15, Satoru Joshita 15, Kazuhiko Nakao16, Tatsuki Ichikawa16, Hidetaka Shibata16, Akinobu Takaki17, Satoshi Yamagiwa18, Masataka Seike19, Shotaro Sakisaka20, Yasuaki Takeyama 20, Masaru Harada21, Michio Senju21, Osamu Yokosuka22, Tatsuo Kanda 22, Yoshiyuki Ueno 23, Hirotoshi Ebinuma24, Takashi Himoto25, Kazumoto Murata4, Shinji Shimoda26, Shinya Nagaoka6, Seigo Abiru6, Atsumasa Komori6,27, Kiyoshi Migita6,27, Masahiro Ito6,27, Hiroshi Yatsuhashi6,27, Yoshihiko Maehara28, Shinji Uemoto29, Norihiro Kokudo30, Masao Nagasaki2,3,31, Katsushi Tokunaga1 & Minoru Nakamura6,7,27,32 Primary biliary cholangitis (PBC) is a chronic and cholestatic autoimmune liver disease caused by the destruction of intrahepatic small bile ducts. Our previous genome-wide association study (GWAS) identifed six susceptibility loci for PBC. -
Prognostic Significance of Notch Ligands in Patients with Non‑Small Cell Lung Cancer
506 ONCOLOGY LETTERS 13: 506-510, 2017 Prognostic significance of Notch ligands in patients with non‑small cell lung cancer 1 2 JOANNA PANCEWICZ-WOJTKIEWICZ , ANDRZEJ ELJASZEWICZ , 3 1 3 OKSANA KOWALCZUK , WIESLAWA NIKLINSKA , RADOSLAW CHARKIEWICZ , 4 1 2 MIROSLAW KOZŁOWSKI , AGNIESZKA MIASKO and MARCIN MONIUSZKO Departments of 1Histology and Embryology, 2Regenerative Medicine and Immune Regulation, 3Clinical Molecular Biology and 4Thoracic Surgery, Medical University of Bialystok, 15-269 Bialystok, Poland Received June 14, 2016; Accepted September 29, 2016 DOI: 10.3892/ol.2016.5420 Abstract. The Notch signaling pathway is deregulated in cancer patients are diagnosed with non-small-cell lung cancer numerous solid types of cancer including non-small cell (NSCLC) (3). Currently, lung cancer therapy is mainly based lung cancer (NSCLC). However, the profile of Notch ligand on Tumor-Node-Metastasis (TNM) disease staging and expression remains unclear. Therefore, the present study tumor histological classification. However, despite progress aimed to determine the profile of Notch ligands in NSCLC in surgical techniques, chemotherapy and radiotherapy, the patients and to investigate whether quantitative assessment 5-year survival rate of patients with lung cancer remains low of Notch ligand expression may have prognostic significance (~16%) (4,5). Therefore, there is a continuous need to identify in NSCLC patients. The study was performed in 61 pairs of specific and sensitive biomarkers that may improve cancer tumor and matched unaffected lung tissue specimens obtained patient management. Such markers should allow prediction from patients with various stages of NSCLC, which were and prognostication of patient survival, disease free survival analyzed by reverse transcription-polymerase chain reac- or treatment response (6).