Epidemiology of Cervico-Facial Pediatric Lymphadenitis As a Result of Nontuberculous Mycobacteria
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Discovery of a Novel Mycobacterium Asiaticum PRA-Hsp65 Pattern
Infection, Genetics and Evolution 76 (2019) 104040 Contents lists available at ScienceDirect Infection, Genetics and Evolution journal homepage: www.elsevier.com/locate/meegid Short communication Discovery of a novel Mycobacterium asiaticum PRA-hsp65 pattern T ⁎ William Marco Vicente da Silva , Mayara Henrique Duarte, Luciana Distásio de Carvalho, Paulo Cesar de Souza Caldas, Carlos Eduardo Dias Campos, Paulo Redner, Jesus Pais Ramos National Reference Laboratory for Tuberculosis, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, RJ, Brazil ARTICLE INFO ABSTRACT Keywords: Twenty-one pulmonary sputum samples from nine Brazilian patients were analyzed by the PRA-hsp65 method PRA-hsp65 for identification of Mycobacterium species and the results were compared by sequencing. We reported a mu- Identification tation at the position 381, that generates a suppression cutting site in the BstEII enzyme, thus leading to a new M. asiaticum PRA-hsp65 pattern for M. asiaticum identification. Nontuberculous mycobacteria (NTM) are opportunistic human pa- widely used for identification of Mycobacterium species. The PRA-hsp65 thogens. NTM are widespread in nature and are found in environmental methodology consists of restriction analysis of a 441 bp PCR fragment sources, including water, soil, and aerosols. They are resistant to most of the hsp65 gene with enzymes BstEII and HaeIII (Campos et al., 2012; disinfectants, including those used in treated water. More than 170 Devulder, 2005; Tamura et al., 2011; Verma et al., 2017). Nowadays, NTM species have been described (http://www.bacterio.net/ M. asiaticum has a single pattern described as type 1 in the PRAsite mycobacterium.html), however, the knowledge about NTM infections database (http://app.chuv.ch/prasite/index.html) based on the fol- is still limited (Chin'ombe et al., 2016; Tortoli, 2014). -
The Crystal Structure of Rv2991 from Mycobacterium Tuberculosis : an F 420 Binding Protein with Unknown Function
This is a repository copy of The crystal structure of Rv2991 from Mycobacterium tuberculosis : An F 420 binding protein with unknown function. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/147627/ Version: Accepted Version Article: Benini, Stefano, Haouz, Ahmed, Proux, Florence et al. (2 more authors) (2019) The crystal structure of Rv2991 from Mycobacterium tuberculosis : An F 420 binding protein with unknown function. JOURNAL OF STRUCTURAL BIOLOGY. pp. 216-224. ISSN 1047-8477 https://doi.org/10.1016/j.jsb.2019.03.006 Reuse This article is distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs (CC BY-NC-ND) licence. This licence only allows you to download this work and share it with others as long as you credit the authors, but you can’t change the article in any way or use it commercially. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ The crystal structure of Rv2991 from Mycobacterium tuberculosis: An F420 binding protein with unknown function Stefano Beninia, ⁎ [email protected] Ahmed Haouzb Florence Prouxb, 1 Pedro Alzaric Keith Wilsond a Bioorganic Chemistry and Bio-Crystallography Laboratory (B2Cl), Faculty of Science and Technology, Free University of Bolzano, Piazza Università 5, Bolzano 39100, Italy bC2RT-Plateforme de cristallographie, Institut Pasteur, CNRS UMR 3528, 75724 Paris Cedex 15, France cUnité de Microbiologie Structurale, Institut Pasteur, CNRS UMR 3528, Université Paris Diderot, Sorbonne Paris Cité, 75724 Paris Cedex 15, France d York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5DD, UK ⁎Corresponding author. -
Clinical and Epidemiological Features
P0506 Paper Poster Session III Nontuberculous mycobacteria Nontuberculous mycobacteria in a third level hospital in Spain: clinical and epidemiological features G. Barbeito Castiñeiras1, M. Otero1, L. Ferreiro1, R. Trastoy1, J.J. Costa1, V. Tuñez1, M.L. Pérez del Molino1 1Clinical Microbiology Department- Complexo Hospitalario Universitario de Santiago de Compostela, Santiago de Compostela, Spain INTRODUCTION In the last few years, we have been attending to an increasing number of isolations of non-tuberculous mycobacteria (NTM) in the health area of Santiago de Compostela (458.759 inhabitants). Our objective is to study the epidemiology of those infections caused by NTM, their associated factors and their clinical significance. METHOD Retrospective study of NTM isolations carried out from 2005 to 2013. Data sources: Microbiology Information System (OpenLab) and the electronic clinical history of Galicia (IANUS). Statistical analysis: SPSSv.20. Microbiological techniques: auramine staining, and the growth in liquid media (MGIT, Bactec 960, Becton Dickinson) 45 days and solid culture of Coletsos ® 8 weeks. Identification:phenotypic and genotypic methods: GenoType®Mycobacterium CM/AS (Hain Lifescience). For diagnosis, the criteria from the American Thoracic Society / Infectious Diseases Society of America (ATS/IDSA) 2007 were applied and the revision of the clinical history was used for the evaluation of clinical significance. RESULTS During those 9 years of study, a total of 456 strains were aisolated (Mycobacterium avium complex 34,65%, Mycobacterium intracellulare 20,83%, Mycobacterium xenopi 11,84%, Mycobacterium abscessus 9,21%, others 23,47%), concerning 212 patients. 91 patients fulfilled the NTM disease criteria of the ATS/IDSA (19,96%). The average age was 61 (range 1-89), 61,54% were male. -
Nontuberculous Mycobacteria in Respiratory Samples from Patients with Pulmonary Tuberculosis in the State of Rondônia, Brazil
Mem Inst Oswaldo Cruz, Rio de Janeiro, Vol. 108(4): 457-462, June 2013 457 Nontuberculous mycobacteria in respiratory samples from patients with pulmonary tuberculosis in the state of Rondônia, Brazil Cleoni Alves Mendes de Lima1,2/+, Harrison Magdinier Gomes3, Maraníbia Aparecida Cardoso Oelemann3, Jesus Pais Ramos4, Paulo Cezar Caldas4, Carlos Eduardo Dias Campos4, Márcia Aparecida da Silva Pereira3, Fátima Fandinho Onofre Montes4, Maria do Socorro Calixto de Oliveira1, Philip Noel Suffys3, Maria Manuela da Fonseca Moura1 1Centro Interdepartamental de Biologia Experimental e Biotecnologia, Universidade Federal de Rondônia, Porto Velho, RO, Brasil 2Laboratório Central de Saúde Pública de Rondônia, Porto Velho, RO, Brasil 3Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz 4Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública-Fiocruz, Rio de Janeiro, RJ, Brasil The main cause of pulmonary tuberculosis (TB) is infection with Mycobacterium tuberculosis (MTB). We aimed to evaluate the contribution of nontuberculous mycobacteria (NTM) to pulmonary disease in patients from the state of Rondônia using respiratory samples and epidemiological data from TB cases. Mycobacterium isolates were identified using a combination of conventional tests, polymerase chain reaction-based restriction enzyme analysis of hsp65 gene and hsp65 gene sequencing. Among the 1,812 cases suspected of having pulmonary TB, 444 yielded bacterial cultures, including 369 cases positive for MTB and 75 cases positive for NTM. Within the latter group, 14 species were identified as Mycobacterium abscessus, Mycobacterium avium, Mycobacterium fortuitum, Myco- bacterium intracellulare, Mycobacterium gilvum, Mycobacterium gordonae, Mycobacterium asiaticum, Mycobac- terium tusciae, Mycobacterium porcinum, Mycobacterium novocastrense, Mycobacterium simiae, Mycobacterium szulgai, Mycobacterium phlei and Mycobacterium holsaticum and 13 isolates could not be identified at the species level. -
Mycobacterium Avium Complex Olecranon Bursitis Resolves
IDCases 2 (2015) 59–62 Contents lists available at ScienceDirect IDCases jo urnal homepage: www.elsevier.com/locate/idcr Case Report Mycobacterium avium complex olecranon bursitis resolves without antimicrobials or surgical intervention: A case report and review of the literature a, b a Selene Working *, Andrew Tyser , Dana Levy a Division of Infectious Diseases, University of Utah School of Medicine, 30 N 1900 E, Room 4B319, Salt Lake City, UT 84132, United States b Department of Orthopaedics, University Orthopaedic Center, 590 Wakara Way, Salt Lake City, UT 84108, United States A R T I C L E I N F O A B S T R A C T Article history: Introduction: Nontuberculous mycobacteria are an uncommon cause of septic olecranon bursitis, though Received 26 March 2015 cases have increasingly been described in both immunocompromised and immunocompetent hosts. Received in revised form 2 April 2015 Guidelines recommend a combination of surgical resection and antimicrobials for treatment. This case is Accepted 5 April 2015 the first reported case of nontuberculous mycobacterial olecranon bursitis that resolved without medical or surgical intervention. Keywords: Case presentation: A 67-year-old female developed a painless, fluctuant swelling of the olecranon bursa Nontuberculous mycobacteria following blunt trauma to the elbow. Due to persistent bursal swelling, she underwent three separate Olecranon bursitis therapeutic bursal aspirations, two involving intrabursal steroid injection. After the third aspiration, the Mycobacterium avium complex bursa became erythematous and severely swollen, and bursal fluid grew Mycobacterium avium complex. Triple-drug antimycobacterial therapy was initiated, but discontinued abruptly due to a rash. Surgery was not performed. -
Rapid Detection and Differentiation of Mycobacterial Species Using a Multiplex PCR System
Revista da Sociedade Brasileira de Medicina Tropical 46(4):447-452, Jul-Aug, 2013 http://dx.doi.org/10.1590/0037-8682-0097-2013 MCaseajor ReportArticle Rapid detection and differentiation of mycobacterial species using a multiplex PCR system Andrea Santos Lima[1], Rafael Silva Duarte[2], Lílian Maria Lapa Montenegro[1] and Haiana Charifker Schindler[1] [1]. Departamento de Imunologia, Centro de Pesquisas Aggeu Magalhães, Fundação Oswaldo Cruz, Recife, PE. [2]. Instituto de Microbiologia, Universidade Federal do Rio Janeiro, Rio de Janeiro, RJ. ABSTRACT Introduction: The early diagnosis of mycobacterial infections is a critical step for initiating treatment and curing the patient. Molecular analytical methods have led to considerable improvements in the speed and accuracy of mycobacteria detection. Methods: The purpose of this study was to evaluate a multiplex polymerase chain reaction system using mycobacterial strains as an auxiliary tool in the differential diagnosis of tuberculosis and diseases caused by nontuberculous mycobacteria (NTM) Results: Forty mycobacterial strains isolated from pulmonary and extrapulmonary origin specimens from 37 patients diagnosed with tuberculosis were processed. Using phenotypic and biochemical characteristics of the 40 mycobacteria isolated in LJ medium, 57.5% (n=23) were characterized as the Mycobacterium tuberculosis complex (MTBC) and 20% (n=8) as nontuberculous mycobacteria (NTM), with 22.5% (n=9) of the results being inconclusive. When the results of the phenotypic and biochemical tests in 30 strains of mycobacteria were compared with the results of the multiplex PCR, there was 100% concordance in the identifi cation of the MTBC and NTM species, respectively. A total of 32.5% (n=13) of the samples in multiplex PCR exhibited a molecular pattern consistent with NTM, thus disagreeing with the fi nal diagnosis from the attending physician. -
The Impact of Chlorine and Chloramine on the Detection and Quantification of Legionella Pneumophila and Mycobacterium Spp
The impact of chlorine and chloramine on the detection and quantification of Legionella pneumophila and Mycobacterium spp. Maura J. Donohue Ph.D. Office of Research and Development Center of Environmental Response and Emergency Response (CESER): Water Infrastructure Division (WID) Small Systems Webinar January 28, 2020 Disclaimer: The views expressed in this presentation are those of the author and do not necessarily reflect the views or policies of the U.S. Environmental Protection Agency. A Tale of Two Bacterium… Legionellaceae Mycobacteriaceae • Legionella (Genus) • Mycobacterium (Genus) • Gram negative bacteria • Nontuberculous Mycobacterium (NTM) (Gammaproteobacteria) • M. avium-intracellulare complex (MAC) • Flagella rod (2-20 µm) • Slow grower (3 to 10 days) • Gram positive bacteria • Majority of species will grow in free-living • Rod shape(1-10 µm) amoebae • Non-motile, spore-forming, aerobic • Aerobic, L-cysteine and iron salts are required • Rapid to Slow grower (1 week to 8 weeks) for in vitro growth, pH: 6.8 to 7, T: 25 to 43 °C • ~156 species • ~65 species • Some species capable of causing disease • Pathogenic or potentially pathogenic for human 3 NTM from Environmental Microorganism to Opportunistic Opponent Genus 156 Species Disease NTM =Nontuberculous Mycobacteria MAC = M. avium Complex Mycobacterium Mycobacterium duvalii Mycobacterium litorale Mycobacterium pulveris Clinically Relevant Species Mycobacterium abscessus Mycobacterium elephantis Mycobacterium llatzerense. Mycobacterium pyrenivorans, Mycobacterium africanum Mycobacterium europaeum Mycobacterium madagascariense Mycobacterium rhodesiae Mycobacterium agri Mycobacterium fallax Mycobacterium mageritense, Mycobacterium riyadhense Mycobacterium aichiense Mycobacterium farcinogenes Mycobacterium malmoense Mycobacterium rufum M. avium, M. intracellulare, Mycobacterium algericum Mycobacterium flavescens Mycobacterium mantenii Mycobacterium rutilum Mycobacterium alsense Mycobacterium florentinum. Mycobacterium marinum Mycobacterium salmoniphilum ( M. fortuitum, M. -
Nunescosta2016.Pdf
Tuberculosis 96 (2016) 107e119 Contents lists available at ScienceDirect Tuberculosis journal homepage: http://intl.elsevierhealth.com/journals/tube REVIEW The looming tide of nontuberculous mycobacterial infections in Portugal and Brazil Daniela Nunes-Costa a, Susana Alarico a, Margareth Pretti Dalcolmo b, * Margarida Correia-Neves c, d, Nuno Empadinhas a, e, a CNC e Center for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal b Reference Center Helio Fraga, Fundaçao~ Oswaldo Cruz, FIOCRUZ, MoH, Rio de Janeiro, Brazil c ICVS e Health and Life Sciences Research Institute, University of Minho, Braga, Portugal d ICVS/3B's, PT Government Associate Laboratory, Braga/Guimaraes,~ Portugal e IIIUC e Institute for Interdisciplinary Research, University of Coimbra, Coimbra, Portugal article info summary Article history: Nontuberculous mycobacteria (NTM) are widely disseminated in the environment and an emerging Received 5 May 2015 cause of infectious diseases worldwide. Their remarkable natural resistance to disinfectants and anti- Received in revised form biotics and an ability to survive under low-nutrient conditions allows NTM to colonize and persist in 27 August 2015 man-made environments such as household and hospital water distribution systems. This overlap be- Accepted 16 September 2015 tween human and NTM environments afforded new opportunities for human exposure, and for expression of their often neglected and underestimated pathogenic potential. Some risk factors pre- Keywords: disposing to NTM disease have been -
Diagnosis, Treatment, and Prevention of Nontuberculous Mycobacterial Diseases
American Thoracic Society Documents An Official ATS/IDSA Statement: Diagnosis, Treatment, and Prevention of Nontuberculous Mycobacterial Diseases David E. Griffith, Timothy Aksamit, Barbara A. Brown-Elliott, Antonino Catanzaro, Charles Daley, Fred Gordin, Steven M. Holland, Robert Horsburgh, Gwen Huitt, Michael F. Iademarco, Michael Iseman, Kenneth Olivier, Stephen Ruoss, C. Fordham von Reyn, Richard J. Wallace, Jr., and Kevin Winthrop, on behalf of the ATS Mycobacterial Diseases Subcommittee This Official Statement of the American Thoracic Society (ATS) and the Infectious Diseases Society of America (IDSA) was adopted by the ATS Board Of Directors, September 2006, and by the IDSA Board of Directors, January 2007 CONTENTS Health Care– and Hygiene-associated Disease and Disease Prevention Summary NTM Species: Clinical Aspects and Treatment Guidelines Diagnostic Criteria of Nontuberculous Mycobacterial M. avium Complex (MAC) Lung Disease Key Laboratory Features of NTM M. kansasii Health Care- and Hygiene-associated M. abscessus Disease Prevention M. chelonae Prophylaxis and Treatment of NTM Disease M. fortuitum Introduction M. genavense Methods M. gordonae Taxonomy M. haemophilum Epidemiology M. immunogenum Pathogenesis M. malmoense Host Defense and Immune Defects M. marinum Pulmonary Disease M. mucogenicum Body Morphotype M. nonchromogenicum Tumor Necrosis Factor Inhibition M. scrofulaceum Laboratory Procedures M. simiae Collection, Digestion, Decontamination, and Staining M. smegmatis of Specimens M. szulgai Respiratory Specimens M. terrae -
Mycobacterium Tuberculosis
JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 1990, p. 2200-2204 Vol. 28, No. 10 0095-1137/90/102200-05$02.00/0 Copyright © 1990, American Society for Microbiology Polymerase Chain Reaction for Detection of Mycobacterium tuberculosis ULF SJOBRING,l MICHAEL MECKLENBURG,"2 ASE BENGÂRD ANDERSEN,3 AND HÂKAN MIORNERl* Department of Medical Microbiologyl and Department ofPure and Applied Biochemistry,2 University ofLund, Lund, Sweden, and Mycobacteria Department, Statens Seruminstitut, Copenhagen, Denmark3 Received 6 March 1990/Accepted 25 June 1990 A polymerase chain reaction for the specific detection of mycobacteria belonging to the Mycobacterium tuberculosis complex was developed. Using a single primer pair derived from the nucleotide sequence of protein antigen b of M. tuberculosis, we achieved specific amplification of a 419-base-pair DNA fragment in M. tuberculosis and M. bovis. After DNA was extracted from mycobacteria by using a simple, safe lysis procedure, we detected the 419-base-pair sequence in samples containing few mycobacteria. Preliminary data suggested that this technique could be applied to clinical specimens for early and specific diagnosis of tuberculosis. Several mycobacterial species are associated with dis- to detect DNAs extracted from various mycobacteria (3, 7). eases in humans. Tuberculosis is caused by Mycobacterium The latter application is based on the sequences of the heat tuberculosis, Mycobacterium africanum, or Mycobacterium shock proteins of M. bovis bacillus Calmette-Guérin (BCG) bovis and is a major health problem, particularly in devel- (21) and M. tuberculosis (18). These sequences are shared by oping countries. The number of cases of tuberculosis world- many other species, and labeled probes are required to wide is estimated to be some 30 million, with an annual identify amplified DNA specific for M. -
Utilization of Molecular and Conventional Methods for the Identification of Nontuberculous Mycobacteria Isolated from Different Water Sources
[Downloaded free from http://www.ijmyco.org on Monday, June 4, 2018, IP: 200.41.178.226] Original Article Utilization of Molecular and Conventional Methods for the Identification of Nontuberculous Mycobacteria Isolated from Different Water Sources Claudia Andrea Tortone1, Martín José Zumárraga2, Andrea Karina Gioffré2, Delia Susana Oriani1 1Laboratory of Mycobacteria, Faculty of Veterinary Sciences, National University of La Pampa, General Pico, La Pampa, 2Biotechnology Institute, National Institute of Agricultural Technology (INTA), Hurlingham, Buenos Aires, Argentina Abstract Background: The environment is the nontuberculous mycobacteria (NTM) reservoir, opportunistic pathogens of great diversity and ubiquity, which is observed in the constant description of new species capable of causing infection. Since its introduction, molecular methods are essential for species identification. Most comparative studies between molecular and conventional methods, have used isolated strains from clinical samples. Methods: The aim of this study was to evaluate the usefulness of molecular methods, especially the hsp65‑PRA (PCR‑Restriction Enzyme Analysis), and biochemical tests in the identification of NTM recovered from water of different origins, using the sequencing of 16S rRNA and hsp65 genes as assessment methods of the previous ones. Species identification was performed for all 56 NTM isolates what were recovered from 32 (42.1%) positive water samples, using conventional phenotypic methods, hsp65‑PRA, partial sequencing of 16S rRNA and sequencing -
Research Article Drug Susceptibility of 33 Reference Strains of Slowly Growing Mycobacteria to 19 Antimicrobial Agents
Hindawi BioMed Research International Volume 2017, Article ID 1584658, 13 pages https://doi.org/10.1155/2017/1584658 Research Article Drug Susceptibility of 33 Reference Strains of Slowly Growing Mycobacteria to 19 Antimicrobial Agents Hui Pang,1 Yi Jiang,2,3 and Kanglin Wan2,3 1 Department of Immunology, Changzhi Medical College, Changzhi, Shanxi 046000, China 2State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China 3Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, Zhejiang 310000, China Correspondence should be addressed to Kanglin Wan; [email protected] Received 23 December 2016; Revised 24 March 2017; Accepted 6 April 2017; Published 20 April 2017 Academic Editor: Frederick D. Quinn Copyright © 2017 Hui Pang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Objectives. Slowly growing mycobacteria (SGM) are prevalent worldwide and cause an extensive spectrum of diseases. Methods. In this study, the antimicrobial susceptibility of 33 reference strains of SGM to 19 antimicrobial agents was tested using a modified microdilution method. Results. Cefmetazole (32/33) and azithromycin (32/33) exhibited the highest antimicrobial activity, and dap- sone (9/33) exhibited the lowest activity against the tested strains. Cefoxitin (30/33), cefoperazone (28/33), and cefepime (28/33) were effective against a high proportion of strains, and macrolides were also highly effective as well as offering the benefit of convenient oral administration to patients.