Fatty Acid Oxidation
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Optimization of the Production of Long-Chain Dicarboxylic Acids from Distillers Corn Oil Using Candida Viswanathii
Rose-Hulman Institute of Technology Rose-Hulman Scholar Graduate Theses - Chemical Engineering Graduate Theses Summer 8-2018 Optimization of the Production of Long-Chain Dicarboxylic Acids from Distillers Corn Oil Using Candida viswanathii Jennifer Ann Mobley Rose-Hulman Institute of Technology Follow this and additional works at: https://scholar.rose-hulman.edu/ chemical_engineering_grad_theses Recommended Citation Mobley, Jennifer Ann, "Optimization of the Production of Long-Chain Dicarboxylic Acids from Distillers Corn Oil Using Candida viswanathii" (2018). Graduate Theses - Chemical Engineering. 11. https://scholar.rose-hulman.edu/chemical_engineering_grad_theses/11 This Thesis is brought to you for free and open access by the Graduate Theses at Rose-Hulman Scholar. It has been accepted for inclusion in Graduate Theses - Chemical Engineering by an authorized administrator of Rose-Hulman Scholar. For more information, please contact weir1@rose- hulman.edu. Optimization of the Production of Long-Chain Dicarboxylic Acids from Distillers Corn Oil Using Candida viswanathii A Thesis Submitted to the Faculty of Rose-Hulman Institute of Technology by Jennifer Ann Mobley In Partial Fulfillment of the Requirements for the Degree of Master of Science in Chemical Engineering August 2018 © 2018 Jennifer Ann Mobley ABSTRACT Mobley, Jennifer Ann M.S.Ch.E. Rose-Hulman Institute of Technology August 2018 Optimization of the Production of Long-Chain Dicarboxylic Acids from Distillers Corn Oil Using Candida viswanathii Thesis Advisor: Dr. Irene Reizman -
Synthesis and Characterization of New Polyesters Based on Renewable Resources
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Open Archive Toulouse Archive Ouverte OATAO is an open access repository that collects the work of Toulouse researchers and makes it freely available over the web where possible This is an author’s version published in: http://oatao.univ-toulouse.fr/23262 Official URL: https://doi.org/10.1016/j.indcrop.2012.07.027 To cite this version: Waig Fang, Sandrine and Satgé-De Caro, Pascale and Pennarun, Pierre- Yves and Vaca-Garcia, Carlos and Thiebaud-Roux, Sophie Synthesis and characterization of new polyesters based on renewable resources. (2013) Industrial Crops and Products, 43. 398-404. ISSN 0926-6690 Any correspondence concerning this service should be sent to the repository administrator: [email protected] Synthesis and characterization of new polyesters based on renewable resources Sandrine Waig Fang a , b , Pascale De Caro a , b, Pierre-Yves Pennarun c, Carlos Vaca-Garcia a , b, Sophie Thiebaud-Roux a ,b,* a Universitéde Toulouse, !NP, LCA(Laboratoire de Chimie Agro-Industrielle),4 allée Emile Monso, F 31432 Toulouse, France b UMR1010 INRA/INP-ENSIACET, Toulouse, France c 915, Route de Moundas, FR-31600 Lamasquère, France ARTICLE INFO ABSTRACT A series ofnon-crosslinked biobased polyesters were prepared from pentaerythritol and aliphatic dicar Keywords: boxylic acids, including fatty acids grafted as side-chains to the backbone of the polymer. The strategy Bio-based polymers Fatty acids utilized tends to create linear polymers by protecting two of the hydroxyl groups in pentaerythritol Pentaerythritol by esterification with fatty acids before the polymerization reaction. -
Cytochrome P450 Enzymes in Oxygenation of Prostaglandin Endoperoxides and Arachidonic Acid
Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy 231 _____________________________ _____________________________ Cytochrome P450 Enzymes in Oxygenation of Prostaglandin Endoperoxides and Arachidonic Acid Cloning, Expression and Catalytic Properties of CYP4F8 and CYP4F21 BY JOHAN BYLUND ACTA UNIVERSITATIS UPSALIENSIS UPPSALA 2000 Dissertation for the Degree of Doctor of Philosophy (Faculty of Pharmacy) in Pharmaceutical Pharmacology presented at Uppsala University in 2000 ABSTRACT Bylund, J. 2000. Cytochrome P450 Enzymes in Oxygenation of Prostaglandin Endoperoxides and Arachidonic Acid: Cloning, Expression and Catalytic Properties of CYP4F8 and CYP4F21. Acta Universitatis Upsaliensis. Comprehensive Summaries of Uppsala Dissertations from Faculty of Pharmacy 231 50 pp. Uppsala. ISBN 91-554-4784-8. Cytochrome P450 (P450 or CYP) is an enzyme system involved in the oxygenation of a wide range of endogenous compounds as well as foreign chemicals and drugs. This thesis describes investigations of P450-catalyzed oxygenation of prostaglandins, linoleic and arachidonic acids. The formation of bisallylic hydroxy metabolites of linoleic and arachidonic acids was studied with human recombinant P450s and with human liver microsomes. Several P450 enzymes catalyzed the formation of bisallylic hydroxy metabolites. Inhibition studies and stereochemical analysis of metabolites suggest that the enzyme CYP1A2 may contribute to the biosynthesis of bisallylic hydroxy fatty acid metabolites in adult human liver microsomes. 19R-Hydroxy-PGE and 20-hydroxy-PGE are major components of human and ovine semen, respectively. They are formed in the seminal vesicles, but the mechanism of their biosynthesis is unknown. Reverse transcription-polymerase chain reaction using degenerate primers for mammalian CYP4 family genes, revealed expression of two novel P450 genes in human and ovine seminal vesicles. -
Colorectal Cancer and Omega Hydroxylases
1 The differential expression of omega-3 and omega-6 fatty acid metabolising enzymes in colorectal cancer and its prognostic significance Abdo Alnabulsi1,2, Rebecca Swan1, Beatriz Cash2, Ayham Alnabulsi2, Graeme I Murray1 1Pathology, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, AB25, 2ZD, UK. 2Vertebrate Antibodies, Zoology Building, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK. Address correspondence to: Professor Graeme I Murray Email [email protected] Phone: +44(0)1224 553794 Fax: +44(0)1224 663002 Running title: omega hydroxylases and colorectal cancer 2 Abstract Background: Colorectal cancer is a common malignancy and one of the leading causes of cancer related deaths. The metabolism of omega fatty acids has been implicated in tumour growth and metastasis. Methods: This study has characterised the expression of omega fatty acid metabolising enzymes CYP4A11, CYP4F11, CYP4V2 and CYP4Z1 using monoclonal antibodies we have developed. Immunohistochemistry was performed on a tissue microarray containing 650 primary colorectal cancers, 285 lymph node metastasis and 50 normal colonic mucosa. Results: The differential expression of CYP4A11 and CYP4F11 showed a strong association with survival in both the whole patient cohort (HR=1.203, 95% CI=1.092-1.324, χ2=14.968, p=0.001) and in mismatch repair proficient tumours (HR=1.276, 95% CI=1.095-1.488, χ2=9.988, p=0.007). Multivariate analysis revealed that the differential expression of CYP4A11 and CYP4F11 was independently prognostic in both the whole patient cohort (p = 0.019) and in mismatch repair proficient tumours (p=0.046). Conclusions: A significant and independent association has been identified between overall survival and the differential expression of CYP4A11 and CYP4F11 in the whole patient cohort and in mismatch repair proficient tumours. -
Glutaric Acid Production by Systems Metabolic Engineering of an L-Lysine–Overproducing Corynebacterium Glutamicum
Glutaric acid production by systems metabolic engineering of an L-lysine–overproducing Corynebacterium glutamicum Taehee Hana, Gi Bae Kima, and Sang Yup Leea,b,c,1 aMetabolic and Biomolecular Engineering National Research Laboratory, Systems Metabolic Engineering and Systems Healthcare Cross-Generation Collaborative Laboratory, Department of Chemical and Biomolecular Engineering (BK21 Plus Program), Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Yuseong-gu, 34141 Daejeon, Republic of Korea; bBioInformatics Research Center, Korea Advanced Institute of Science and Technology, Yuseong-gu, 34141 Daejeon, Republic of Korea; and cBioProcess Engineering Research Center, Korea Advanced Institute of Science and Technology, Yuseong-gu, 34141, Daejeon, Republic of Korea Contributed by Sang Yup Lee, October 6, 2020 (sent for review August 18, 2020; reviewed by Tae Seok Moon and Blake A. Simmons) There is increasing industrial demand for five-carbon platform processes rely on nonrenewable and toxic starting materials, chemicals, particularly glutaric acid, a widely used building block however. Thus, various approaches have been taken to biologi- chemical for the synthesis of polyesters and polyamides. Here we cally produce glutaric acid from renewable resources (13–19). report the development of an efficient glutaric acid microbial pro- Naturally, glutaric acid is a metabolite of L-lysine catabolism in ducer by systems metabolic engineering of an L-lysine–overproducing Pseudomonas species, in which L-lysine is converted to glutaric Corynebacterium glutamicum BE strain. Based on our previous study, acid by the 5-aminovaleric acid (AVA) pathway (20, 21). We an optimal synthetic metabolic pathway comprising Pseudomonas previously reported the development of the first glutaric acid- putida L-lysine monooxygenase (davB) and 5-aminovaleramide amido- producing Escherichia coli by introducing this pathway compris- hydrolase (davA) genes and C. -
ALIPHATIC DICARBOXYLIC ACIDS from OIL SHALE ORGANIC MATTER – HISTORIC REVIEW REIN VESKI(A)
Oil Shale, 2019, Vol. 36, No. 1, pp. 76–95 ISSN 0208-189X doi: https://doi.org/10.3176/oil.2019.1.06 © 2019 Estonian Academy Publishers ALIPHATIC DICARBOXYLIC ACIDS FROM OIL SHALE ORGANIC MATTER ‒ HISTORIC REVIEW REIN VESKI(a)*, SIIM VESKI(b) (a) Peat Info Ltd, Sõpruse pst 233–48, 13420 Tallinn, Estonia (b) Department of Geology, Tallinn University of Technology, Ehitajate tee 5, 19086 Tallinn, Estonia Abstract. This paper gives a historic overview of the innovation activities in the former Soviet Union, including the Estonian SSR, in the direct chemical processing of organic matter concentrates of Estonian oil shale kukersite (kukersite) as well as other sapropelites. The overview sheds light on the laboratory experiments started in the 1950s and subsequent extensive, triple- shift work on a pilot scale on nitric acid, to produce individual dicarboxylic acids from succinic to sebacic acids, their dimethyl esters or mixtures in the 1980s. Keywords: dicarboxylic acids, nitric acid oxidation, plant growth stimulator, Estonian oil shale kukersite, Krasava oil shale, Budagovo sapropelite. 1. Introduction According to the National Development Plan for the Use of Oil Shale 2016– 2030 [1], the oil shale industry in Estonia will consume 28 or 9.1 million tons of oil shale in the years to come in a “rational manner”, which in today’s context means the production of power, oil and gas. This article discusses the reasonability to produce aliphatic dicarboxylic acids and plant growth stimulators from oil shale organic matter concentrates. The technology to produce said acids and plant growth stimulators was developed by Estonian researchers in the early 1950s, bearing in mind the economic interests and situation of the Soviet Union. -
The Role of Alpha Oxidation in Lipid Metabolism, 2017
THE ROLE OF ALPHA OXIDATION IN LIPID METABOLISM Benjamin John Jenkins Darwin College Medical Research Council – Human Nutrition Research Department of Biochemistry University of Cambridge This dissertation is submitted for the degree of Doctor of Philosophy July 2018 DECLARATION This dissertation is the result of my own work and includes nothing, which is the outcome of work done in collaboration except as declared in the preface and specified in the text. It is not substantially the same as any that I have submitted, or, is being concurrently submitted for a degree or diploma or other qualification at the University of Cambridge or any other University or similar institution except as declared in the Preface and specified in the text. I further state that no substantial part of my dissertation has already been submitted, or, is being concurrently submitted for any such degree, diploma or other qualification at the University of Cambridge or any other University or similar institution except as declared in the Preface and specified in the text. In accordance with the University of Cambridge guidelines, this thesis does not exceed 60,000 words. Signed: ______________________________________________________________ Date: _______________________________________________________________ Benjamin John Jenkins BSc. MSc. Darwin College, Silver Street, Cambridge, CB3 9EU by i 2014 Word Template Template Friedman Friedman & Morgan Morgan & ii The Role of Alpha Oxidation in Lipid Metabolism, 2017 ABSTRACT Recent findings have shown an inverse association between the circulating levels of pentadecanoic acid (C15:0) and heptadecanoic acid (C17:0) with the risk of pathological development in type 2 diabetes, cardio vascular disease and neurological disorders. From previously published research, it has been said that both these odd chain fatty acids are biomarkers of their dietary intake and are significantly correlated to dietary ruminant fat intake. -
Transformation of Dicarboxylic Acids by Three Airborne Fungi
This document is the unedited Author’s version of a Submitted Work that was subsequently accepted for publication in 'Environmental Science & Technology', copyright © American Chemical Society after peer review. To access the final edited and published work https://www.sciencedirect.com/science/article/pii/S0048969707010972 doi: 10.1016/j.scitotenv.2007.10.035 Microbial and “de novo” transformation of dicarboxylic acids by three airborne fungi Valérie Côté, Gregor Kos, Roya Mortazavi, Parisa A. Ariya Abstract Micro-organisms and organic compounds of biogenic or anthropogenic origins are important constituents of atmospheric aerosols, which are involved in atmospheric processes and climate change. In order to investigate the role of fungi and their metabolisation activity, we collected airborne fungi using a biosampler in an urban location of Montreal, Quebec, Canada (45° 28′ N, 73° 45′ E). After isolation on Sabouraud dextrose agar, we exposed isolated colonies to dicarboxylic acids (C2–C7), a major group of organic aerosols and monitored their growth. Depending on the acid, total fungi numbers varied from 35 (oxalic acid) to 180 CFU/mL (glutaric acid). Transformation kinetics of malonic acid, presumably the most abundant dicarboxylic acid, at concentrations of 0.25 and 1.00 mM for isolated airborne fungi belonging to the genera Aspergillus, Penicillium, Eupenicillium, and Thysanophora with the fastest transformation rate are presented. The initial concentration was halved within 4.5 and 11.4 days. Other collected fungi did not show a significant degradation and the malonic acid concentration remained unchanged (0.25 and 1.00 mM) within 20 days. Degradation of acid with formation of metabolites was followed using high performance liquid chromatography-ultraviolet detection (HPLC/UV) and gas chromatography–mass spectrometry (GC/MS), as well as monitoring of 13C labelled malonic acid degradation with solid-state nuclear magnetic resonance spectroscopy (NMR). -
Catalyzed Synthesis of Zinc Clays by Prebiotic Central Metabolites
bioRxiv preprint doi: https://doi.org/10.1101/075176; this version posted September 14, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Catalyzed Synthesis of Zinc Clays by Prebiotic Central Metabolites Ruixin Zhoua, Kaustuv Basub, Hyman Hartmanc, Christopher J. Matochad, S. Kelly Searsb, Hojatollah Valib,e, and Marcelo I. Guzman*,a *Corresponding Author: [email protected] aDepartment of Chemistry, University of Kentucky, Lexington, KY, 40506, USA; bFacility for Electron Microscopy Research, McGill University, 3640 University Street, Montreal, Quebec H3A 0C7, Canada; cEarth, Atmosphere, and Planetary Science Department, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; dDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA; eDepartment of Anatomy & Cell Biology, 3640 University Street, Montreal H3A 0C7, Canada The authors declare no competing financial interest. Number of text pages: 20 Number of Figures: 9 Number of Tables: 0 bioRxiv preprint doi: https://doi.org/10.1101/075176; this version posted September 14, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract How primordial metabolic networks such as the reverse tricarboxylic acid (rTCA) cycle and clay mineral catalysts coevolved remains a mystery in the puzzle to understand the origin of life. -
Clinical Implications of 20-Hydroxyeicosatetraenoic Acid in the Kidney, Liver, Lung and Brain
1 Review 2 Clinical Implications of 20-Hydroxyeicosatetraenoic 3 Acid in the Kidney, Liver, Lung and Brain: An 4 Emerging Therapeutic Target 5 Osama H. Elshenawy 1, Sherif M. Shoieb 1, Anwar Mohamed 1,2 and Ayman O.S. El-Kadi 1,* 6 1 Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta, Edmonton T6G 2E1, AB, Canada; 7 [email protected] (O.H.E.); [email protected] (S.M.S.); [email protected] (A.M.) 8 2 Department of Basic Medical Sciences, College of Medicine, Mohammed Bin Rashid University of 9 Medicine and Health Sciences, Dubai, United Arab Emirates 10 * Correspondence: [email protected]; Tel.: 780-492-3071; Fax: 780-492-1217 11 Academic Editor: Kishor M. Wasan 12 Received: 12 January 2017; Accepted: 15 February 2017; Published: 20 February 2017 13 Abstract: Cytochrome P450-mediated metabolism of arachidonic acid (AA) is an important 14 pathway for the formation of eicosanoids. The ω-hydroxylation of AA generates significant levels 15 of 20-hydroxyeicosatetraenoic acid (20-HETE) in various tissues. In the current review, we discussed 16 the role of 20-HETE in the kidney, liver, lung, and brain during physiological and 17 pathophysiological states. Moreover, we discussed the role of 20-HETE in tumor formation, 18 metabolic syndrome and diabetes. In the kidney, 20-HETE is involved in modulation of 19 preglomerular vascular tone and tubular ion transport. Furthermore, 20-HETE is involved in renal 20 ischemia/reperfusion (I/R) injury and polycystic kidney diseases. The role of 20-HETE in the liver is 21 not clearly understood although it represents 50%–75% of liver CYP-dependent AA metabolism, 22 and it is associated with liver cirrhotic ascites. -
Identification of the Cytochrome P450 Enzymes Responsible for the X
FEBS Letters 580 (2006) 3794–3798 Identification of the cytochrome P450 enzymes responsible for the x-hydroxylation of phytanic acid J.C. Komen, R.J.A. Wanders* Departments of Clinical Chemistry and Pediatrics, Emma Children’s Hospital, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands Received 27 March 2006; revised 26 May 2006; accepted 30 May 2006 Available online 9 June 2006 Edited by Sandro Sonnino tanic acid occurs effectively by bacteria present in the rumen Abstract Patients suffering from Refsum disease have a defect in the a-oxidation pathway which results in the accumulation of of ruminants. phytanic acid in plasma and tissues. Our previous studies have Phytanic acid accumulates in patients with adult Refsum dis- shown that phytanic acid is also a substrate for the x-oxidation ease (ARD, MIM 266500) which is due to a defect in the a-oxi- pathway. With the use of specific inhibitors we now show that dation pathway caused by mutations in one of two genes members of the cytochrome P450 (CYP450) family 4 class are including the PAHX gene which codes for phytanoyl-CoA responsible for phytanic acid x-hydroxylation. Incubations with hydroxylase [2,3], and the PEX7 gene which codes for the microsomes containing human recombinant CYP450s (Super- PTS2 receptor [4]. The majority of ARD patients have muta- TM somes ) revealed that multiple CYP450 enzymes of the family tions in the PAHX gene. The increased levels of phytanic acid 4 class are able to x-hydroxylate phytanic acid with the follow- in plasma and tissues are thought to be the direct cause for the ing order of efficiency: CYP4F3A > CYP4F3B > CYP4F2 > pathology of the disease. -
Investigations on Acid Hydrolysis of Polyesters*
Investigations on Acid Hydrolysis of Polyesters* E. SZABÓ-RÉTHY and I. VANCSÓ-SZMERCSÁNYI Research Institute f or the Plastics Industry, Budapest XIV Received August 31, 1971 Accepted for publication March 17, 1972 The present investigations aimed at the relationships by which the acid hydrolysis of polyesters can be treated kinetically and consequently effects of the essential variables on the acid-catalyzed hydrolysis of polyesters were determined. In this respect, our results are concerned with hydrolysis of polyesters from different types of dicarboxylic acids and diols in the presence of various acid catalysts under different conditions of reaction variables. In some cases, activation energies were also determined based on temperature dependence of the rate constants. The results may refer to the possible re action mechanisms. Several papers have covered the kinetics and mechanism of hydrolysis of monoesters both in acid and in alkaline media. In the fundamental work of Day and Ingold [1], the possible reaction mechanisms of ester hydrolysis were summarized and classified. The subsequent studies directed principally to supporting these mechanisms or determining the category into which a particular ester hydrolysis can be placed according to the classification reported. Studies on hydrolysis of polyesters are far less comprehensive. Only a few papers have treated this field being confined merely to investigations of hydrolyses in alkaline media [2 — 6]. The present paper deals with acid hydrolysis of polyesters connected partly with our previous studies on kinetics and mechanism of polyesterification [7-11]. Experimental The experiments were performed in inert atmosphere in two ways: 1. Hydrolysis was carried out in a double-walled thermoregulated vessel equipped with a reflux condenser.