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PLUMED
The Molecular Sciences Software Institute
A Command-Line Interface for Analysis of Molecular Dynamics Simulations
EPSRC Service Level Agreement with STFC for Computational Science Support
Lawrence Berkeley National Laboratory Recent Work
Measure to Fund Upgrades
PLUMED User's Guide
Assessing the Feasibility of Genome-Wide DNA Methylation Profiling
PLUMED Tutorial
Open Source Molecular Modeling
Molecular Modeling in Drug Design
Metadynamics Metainference with PLUMED
SCM: Required Citations
Optimization of Molecular Dynamics Simulations of C-MYC1-88—An Intrinsically Disordered System
A Micro PLUMED Tutorial for FHI-Aims Users PLUMED: Portable Plugin for Free-Energy Calculations with Molecular Dynamics
An Automated Platform for Structural Analysis of Membrane Proteins Through Serial Crystallography
The Plumed Serpant
Prediction of Binding Poses to FXR Using Multi-Targeted Docking
Garcia Ardison May 2011.Pdf
Top View
How Well Do Force Fields Capture the Strength of Salt Bridges in Proteins?
Best Practices for Alchemical Free Energy Calculations [Article V 1.0]
Mapping Transiently Formed and Sparsely Populated Conformations on a Complex Energy Landscape Yong Wang, Elena Papaleo, Kresten Lindorff-Larsen*
The Bending of Hemagglutin
Libraries Compilers
Annual Report 2018
S.A. Raja Pharmacy College Vadakkangulam-627 116
Arxiv:0902.0874V3 [Physics.Comp-Ph] 30 Apr 2009 D Mn Oeo H Otpopular Most Extending the at of to Aimed Some Algorithms Among Solids
Ligand Binding to Telomeric G-Quadruplex DNA Investigated By
03-2-Plumed-Worksheet.Pdf
Chapter 5 Collective Variables
Multi-State Recognition Pathway of the Intrinsically Disordered Protein
Bayesian-Maximum-Entropy Reweighting of IDP Ensembles Based on NMR Chemical Shifts
A Combined Activation Mechanism for the Glucagon Receptor
I-PI 2.0: a Universal Force Engine for Advanced Molecular Simulations
Molecular Dynamics Simulations of Nucleotide Release from the Circadian Clock Protein Kaic Reveal Atomic-Resolution Functional Insights
The PLUMED Plugin and Free Energy Methods in Electronic-Structure-Based Molecular Dynamics
Signatures of a Liquid–Liquid Transition in an Ab Initio Deep Neural Network Model for Water