JOURNAL of NEMATOLOGY Morphological, Morphometrical, and Molecular Characterization of Metarhabditis Amsactae
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Incorporating Genomics Into the Toolkit of Nematology
Journal of Nematology 44(2):191–205. 2012. Ó The Society of Nematologists 2012. Incorporating Genomics into the Toolkit of Nematology 1 2 1,* ADLER R. DILLMAN, ALI MORTAZAVI, PAUL W. STERNBERG Abstract: The study of nematode genomes over the last three decades has relied heavily on the model organism Caenorhabditis elegans, which remains the best-assembled and annotated metazoan genome. This is now changing as a rapidly expanding number of nematodes of medical and economic importance have been sequenced in recent years. The advent of sequencing technologies to achieve the equivalent of the $1000 human genome promises that every nematode genome of interest will eventually be sequenced at a reasonable cost. As the sequencing of species spanning the nematode phylum becomes a routine part of characterizing nematodes, the comparative approach and the increasing use of ecological context will help us to further understand the evolution and functional specializations of any given species by comparing its genome to that of other closely and more distantly related nematodes. We review the current state of nematode genomics and discuss some of the highlights that these genomes have revealed and the trend and benefits of ecological genomics, emphasizing the potential for new genomes and the exciting opportunities this provides for nematological studies. Key words: ecological genomics, evolution, genomics, nematodes, phylogenetics, proteomics, sequencing. Nematoda is one of the most expansive phyla docu- piece of knowledge we can currently obtain for any mented with free-living and parasitic species found in particular life form (Consortium, 1998). nearly every ecological niche(Yeates, 2004). Traditionally, As in many other fields of biology, the nematode C. -
122, November 1998
PSAMMONALIA Newsletter of the International Association of Meiobenthologists Number 122, November 1998 Composed and Printed at The University of Gent, Department of Biology, Marine Biology Section, K.L. Ledeganckstr. 35, B-9000 Gent, Belgium. Good luck to the new chairman and editorial board! 3 months later... This Newsletter is not part of the scientific literature for taxonomic purposes Page 2 Editor: Magda Vincx email address : [email protected] Executive Committee Magda Vincx, Chairperson, Ann Vanreusel, Treasurer, Paul A. Montagna, Past Chairperson, Marine Science Institute, University of Texas at Port Aransas, P.O. Box 1267, Port Aransas TX 78373, USA Robert Feller, Assistant Treasurer and Past Treasurer, Belle Baruch Institute for Marine Science and Coastal Research, University of South Carolina, Columbia SC 29208, USA Gunter Arlt, Term Expires 2001, Rostock University, Department.of Biology, Rostock D18051, GERMANY Teresa Radziejewska, Term Expires 1998, Interoceanmetal Joint Organization, ul. Cyryla I Metodego 9, 71- 541 Szczecin, POLAND Yoshihisa Shirayama, Term expires 1998 Seto Marine Biological laboratory, Graduate School of Science, Kyoto University 459 Shirahama, Wakayama 649-2211 Japan James Ward, Term Expires 1998, Department of Biology, Colorado State University, Fort Collins, CO 80523 USA Ex-Officio Executive Committee (Past Chairpersons) Robert P. Higgins, Founding Editor, 1966-67 W. Duane Hope 1968-69 John S. Gray 1970-71 Wilfried Westheide 1972-73 Bruce C. Coull 1974-75 Jeanne Renaud-Mornant 1976-77 William D. Hummon 1978-79 Robert P. Higgins 1980-81 Carlo Heip 1982-83 Olav Giere 1984-86 John W. Fleeger 1987-89 Richard M. Warwick 1990-92 Paul A. Montagna 1993-1995 Board of Correspondents Bruce Coull, Belle Baruch Institute for Marine Science and Coastal Research, University of South Carolina, Columbia, SC 29208, USA Dan Danielopol, Austrian Academy of Sciences, Institute of Limnology, A-5310 Mondsee, Gaisberg 116, Austria Roberto Danovaro, Facoltà de Scienze, Università di Ancona, ITALY Nicole Gourbault, Muséum Nat. -
SOME STUDIES on the RHABDITID NEMATODES of JAMMU and KASHMIR M^Ittx of $I)Tlo^Opi)P
SOME STUDIES ON THE RHABDITID NEMATODES OF JAMMU AND KASHMIR DISSERTATION SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE AWARD OF THE DEGREE OF M^ittx of $I)tlo^opi)P IN ZOOLOGY BY ALI ASGHAR SHAH SECTION OF NEMATOLOGY DEPARTMENT OF ZOOLOGY ALIGARH MUSLIM UNIVERSITY ALIGARH (INDIA) 2001 ..r-'- ^^.^ '^X -^"^ - i,'A^>^<, <•• /^ '''^^ -:':^-:^ DS3204 Phones \ External: 700920/21-300/30 \ Internal: 300/301 DEPARTMENT OF ZOOLOGY ALIGARH MUSLIM UNIVERSITY '^it^^ ALIGARH—202002 INDIA Sections : 1. AGRICULTURAL NEMATOLOGY ^- ^°- /ZD 2. ENTOMOLOGY 3. FISHERY SCIENCE &AQUACULTURE Dated. 4. GENETICS 5. PARASITOLOGY This is to certify that the research work presented in the dissertation entitled "Some studies on the Rhabditid nematodes of Jammu and Kashmir", by Mr. Ali Asghar Shah is original and was carried out under my supervision. I have permitted Mr. Shah to submit it to the Aligarh Muslim University, Aligarh, in fulfilment of the requirements for the degree of Master of Philosophy in Zoology. Irfan Ahmad Professor "'7)ecfica/ecf ^o ma dearest Qincfe IS no more Aere io see t£e fruii ofmtj laoour. " ACKNOWLEDGEMENTS The auther is highly indebted to Prof. Irfan Ahmad for his excellent guidance, valuable advices and continuous encouragement during the course of present work and also for critically going through the manuscript. The author is grateful to Prof. A. K. Jafri Chairman, Department of Zoology for providing laboratory facilities. The author expresses sincere thanks to Mrs «& Prof. M. Shamim Jairajpuri, Prof. Shahid Hasan Khan, Dr. Wasim Ahmad, Dr. Qudsia Tahseen and Dr. (Mrs.) Anjum Ahmad for their constant encouragement and valuable suggestions. The constant inspiration and support from my parents, my elder brother Sayed Ali Akhtar Shah and my uncle Sayed Safeer Hussain Shah and the helping hands extended by my senior colleague Miss Azra Shaheen, my friend Md. -
Microbial Metazoa Are Microbes Too
PERSPECTIVE Ecological and Evolutionary Science Microbial Metazoa Are Microbes Too Holly M. Bika aDepartment of Nematology, University of California, Riverside, Riverside, California, USA ABSTRACT Microbial metazoa inhabit a certain “Goldilocks zone,” where conditions are just right for the continued ignorance of these taxa. These microscopic animal species have body sizes of Ͻ1 mm and include diverse groups such as nematodes, tardigrades, kinorhynchs, loriciferans, and platyhelminths. The majority of species are too large to be considered in single-cell genomics approaches, yet too small to be wrapped into international genome sequencing initiatives. Other microbial eukaryote groups (namely the fungal and protist communities) have gained significant mo- mentum in recent years, driven by a strong community of researchers united behind a common goal of culturing and sequencing new representatives. However, due to historical factors and difficult taxonomy, persistent research silos still exist for most microbial metazoan groups, and public molecular databases remain sparsely popu- lated. Here, I argue that small metazoa should be embraced as a key component of microbial ecology studies, promoting a holistic and cutting-edge view of natural ecosystems. KEYWORDS early career researcher, marine sediments, microbial metazoa, microbiome, symbioses, terrestrial soils hat is a “microbe”? For some researchers, this term has a very narrow definition, Wincluding only prokaryotic taxa within the domains of Bacteria and Archaea. But from an environmental viewpoint—one that takes into account species interactions and ecosystem function—the gamut of microbes must include a much wider biological spectrum, inclusive of viruses, unicellular and colonial eukaryotes, microbial animal phyla, and eggs and larval stages of larger vertebrate and invertebrate species. -
1 Caracterización Molecular Y
Tropical and Subtropical Agroecosystems 23 (2020): #64 Grifaldo-Alcantara et al., 2020 CARACTERIZACIÓN MOLECULAR Y MORFOMÉTRICA DE Heterorhabditis indica (CEPA CP13JA) AISLADO EN EL CULTIVO DE CAÑA DE AZÚCAR † [MOLECULAR AND MORPHOMETRIC CHARACTERIZATION OF Heterorhabditis indica (STRAIN CP13JA) ISOLATED IN THE CULTIVATION SUGARCANE] Pedro Fabian Grifaldo-Alcantara1, Raquel Alatorre-Rosas2, Hilda Victoria Silva-Rojas2, Patricia S. Stock3, Francisco Hernandez-Rosas4, Haidel Vargas-Madriz1, Ausencio Azuara-Dominguez5 and Yuridia Durán-Trujillo6 * 1 Centro Universitario de la Costa Sur, Universidad de Guadalajara, Departamento de Producción Agrícola. Av. Independencia Nacional # 151, Autlán de Navarro, Jalisco, C.P. 48900, México. Email. [email protected], [email protected] 2 Colegio de Postgraduados, Campus Montecillo, Km. 36.5 carretera México- Texcoco, Montecillo, Texcoco, Edo de México, México. C.P. 56230. Email. [email protected], [email protected] 3 University of Arizona, Department of Entomology / Plant Sciences. Forbes Bldg. Km 410. 1140 E. South Campus Tucson, AZ. USA. Email. [email protected] 4 Colegio de Postgraduados, Campus Córdoba, Km 348 carretera Federal Córdoba- Veracruz, Amatlán de los Reyes, Veracruz, México. C.P. 94946. México. Email. [email protected] 5 Tecnológico Nacional de México/I.T. de Cd. Victoria, Ciudad Victoria, Tamaulipas, CP 87010 México. Email. [email protected] 6 Universidad Autónoma de Guerrero, Facultad de Ciencias Agropecuarias y Ambientales. Periférico Poniente S/N Frente a la Colonia Villa de Guadalupe, Iguala de la independencia, Guerrero, México, CP 40040. Email. [email protected] *Corresponding author SUMMARY Background. Heterorhabditis and Steinernema are two genera of entomopathogen nematodes used as effective biocontrollers in pest insect control. Target. -
1 Reproductive Efficiency of Entomopathogenic Nematodes As Scavengers. Are They Able to 1 Fight for Insect's Cadavers?
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Sapientia 1 Reproductive efficiency of entomopathogenic nematodes as scavengers. Are they able to 2 fight for insect’s cadavers? 3 4 Rubén Blanco-Péreza,b, Francisco Bueno-Palleroa,b, Luis Netob, Raquel Campos-Herreraa,b,* 5 6 a MeditBio, Centre for Mediterranean Bioresources and Food, Universidade do Algarve, Campus 7 de Gambelas, 8005, Faro (Portugal) 8 b Universidade do Algarve, Campus de Gambelas, 8005, Faro (Portugal) 9 10 *Corresponding author 11 Email: [email protected] 12 1 13 Abstract 14 15 Entomopathogenic nematodes (EPNs) and their bacterial partners are well-studied insect 16 pathogens, and their persistence in soils is one of the key parameters for successful use as 17 biological control agents in agroecosystems. Free-living bacteriophagous nematodes (FLBNs) in 18 the genus Oscheius, often found in soils, can interfere in EPN reproduction when exposed to live 19 insect larvae. Both groups of nematodes can act as facultative scavengers as a survival strategy. 20 Our hypothesis was that EPNs will reproduce in insect cadavers under FLBN presence, but their 21 reproductive capacity will be severely limited when competing with other scavengers for the same 22 niche. We explored the outcome of EPN - Oscheius interaction by using freeze-killed larvae of 23 Galleria mellonella. The differential reproduction ability of two EPN species (Steinernema 24 kraussei and Heterorhabditis megidis), single applied or combined with two FLBNs (Oscheius 25 onirici or Oscheius tipulae), was evaluated under two different infective juvenile (IJ) pressure: 26 low (3 IJs/host) and high (20 IJs/host). -
Oscheius Tipulae* §
Oscheius tipulae* § Marie-Anne Félix , Institut Jacques Monod, CNRS – Universités Paris, 75251 Paris cedex 05, France Table of Contents 1. Phylogenetic relationships ......................................................................................................... 2 1.1. Phylogenetic position of the Oscheius genus .......................................................................2 1.2. The Oscheius genus .......................................................................................................2 2. Natural populations .................................................................................................................. 3 2.1. Ecology .......................................................................................................................3 2.2. Isolation and wild genetic resources .................................................................................. 3 2.3. Population genetics ........................................................................................................ 3 3. Basic biology in the laboratory ................................................................................................... 3 4. Genetics .................................................................................................................................3 4.1. Basic forward genetic methods ........................................................................................ 3 4.2. Available mutants ........................................................................................................ -
Towards Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius Tipulae to Identify Mutations Affecting Vulva Development
Genetics: Early Online, published on June 19, 2017 as 10.1534/genetics.117.203521 Towards universal forward genetics: using a draft genome sequence of the nematode Oscheius tipulae to identify mutations affecting vulva development 5 Fabrice Besnard*1,2,3, Georgios Koutsovoulos†1,4, Sana Dieudonné*, Mark Blaxter†,5 and Marie-Anne Félix*2,5 10 * Ecole Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'Ecole Normale Supérieure, 75005 Paris, France † Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK 1 Co-first authors. 2 Co-corresponding authors: [email protected], [email protected] 3 Current Address: Laboratoire de Reproduction de développement des plantes, Lyon, France; 15 4 Current Address: INRA, Université Côte d’Azur, CNRS, ISA, France 5 Co-last authors Besnard F., Koutsovoulos G. et al. Oscheius Mapping-by-sequencing 1/48 Copyright 2017. Running title: Oscheius Mapping-by-sequencing Key words : Oscheius tipulae, genome assembly, mapping-by sequencing, vulva development, mig-13 Co-corresponding authors: Fabrice Besnard Address: Laboratoire Reproduction et Développement des Plantes (RDP) 20 Ecole Normale Supérieure de Lyon (ENS-Lyon) 46, allée d'Italie, 69364 LYON Cedex 07. Tel: +33-4-72-72-86-05 mail: [email protected] Marie-Anne Félix Address: Institute of Biology of the Ecole Normale Supérieure (IBENS) 25 46 rue d'Ulm, 75230 Paris cedex 05, France Tel: +33-1-44-32-39-44 mail: [email protected] Besnard F., Koutsovoulos G. et al. Oscheius Mapping-by-sequencing 2/48 Abstract Mapping-by-sequencing has become a standard method to map and identify phenotype-causing mutations in model species. -
In Caenorhabditis Elegans
Identification of DVA Interneuron Regulatory Sequences in Caenorhabditis elegans Carmie Puckett Robinson1,2, Erich M. Schwarz1, Paul W. Sternberg1* 1 Division of Biology and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California, United States of America, 2 Department of Neurology and VA Greater Los Angeles Healthcare System, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America Abstract Background: The identity of each neuron is determined by the expression of a distinct group of genes comprising its terminal gene battery. The regulatory sequences that control the expression of such terminal gene batteries in individual neurons is largely unknown. The existence of a complete genome sequence for C. elegans and draft genomes of other nematodes let us use comparative genomics to identify regulatory sequences directing expression in the DVA interneuron. Methodology/Principal Findings: Using phylogenetic comparisons of multiple Caenorhabditis species, we identified conserved non-coding sequences in 3 of 10 genes (fax-1, nmr-1, and twk-16) that direct expression of reporter transgenes in DVA and other neurons. The conserved region and flanking sequences in an 85-bp intronic region of the twk-16 gene directs highly restricted expression in DVA. Mutagenesis of this 85 bp region shows that it has at least four regions. The central 53 bp region contains a 29 bp region that represses expression and a 24 bp region that drives broad neuronal expression. Two short flanking regions restrict expression of the twk-16 gene to DVA. A shared GA-rich motif was identified in three of these genes but had opposite effects on expression when mutated in the nmr-1 and twk-16 DVA regulatory elements. -
Downloaded from Wormbase.Org
Kraus et al. EvoDevo (2017) 8:16 DOI 10.1186/s13227-017-0081-y EvoDevo RESEARCH Open Access Diferences in the genetic control of early egg development and reproduction between C. elegans and its parthenogenetic relative D. coronatus Christopher Kraus1,4† , Philipp H. Schifer1,2*† , Hiroshi Kagoshima3, Hideaki Hiraki3, Theresa Vogt1,5, Michael Kroiher1 , Yuji Kohara3 and Einhard Schierenberg1 Abstract Background: The free-living nematode Diploscapter coronatus is the closest known relative of Caenorhabditis elegans with parthenogenetic reproduction. It shows several developmental idiosyncracies, for example concerning the mode of reproduction, embryonic axis formation and early cleavage pattern (Lahl et al. in Int J Dev Biol 50:393–397, 2006). Our recent genome analysis (Hiraki et al. in BMC Genomics 18:478, 2017) provides a solid foundation to better understand the molecular basis of developmental idiosyncrasies in this species in an evolutionary context by com- parison with selected other nematodes. Our genomic data also yielded indications for the view that D. coronatus is a product of interspecies hybridization. Results: In a genomic comparison between D. coronatus, C. elegans, other representatives of the genus Caenorhab- ditis and the more distantly related Pristionchus pacifcus and Panagrellus redivivus, certain genes required for central developmental processes in C. elegans like control of meiosis and establishment of embryonic polarity were found to be restricted to the genus Caenorhabditis. The mRNA content of early D. coronatus embryos was sequenced and compared with similar stages in C. elegans and Ascaris suum. We identifed 350 gene families transcribed in the early embryo of D. coronatus but not in the other two nematodes. -
The Role of Carbon Dioxide in Nematode Behaviour and Physiology Cambridge.Org/Par
Parasitology The role of carbon dioxide in nematode behaviour and physiology cambridge.org/par Navonil Banerjee and Elissa A. Hallem Review Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA Cite this article: Banerjee N, Hallem EA Abstract (2020). The role of carbon dioxide in nematode behaviour and physiology. Parasitology 147, Carbon dioxide (CO2) is an important sensory cue for many animals, including both parasitic 841–854. https://doi.org/10.1017/ and free-living nematodes. Many nematodes show context-dependent, experience-dependent S0031182019001422 and/or life-stage-dependent behavioural responses to CO2, suggesting that CO2 plays crucial roles throughout the nematode life cycle in multiple ethological contexts. Nematodes also Received: 11 July 2019 show a wide range of physiological responses to CO . Here, we review the diverse responses Revised: 4 September 2019 2 Accepted: 16 September 2019 of parasitic and free-living nematodes to CO2. We also discuss the molecular, cellular and First published online: 11 October 2019 neural circuit mechanisms that mediate CO2 detection in nematodes, and that drive con- text-dependent and experience-dependent responses of nematodes to CO2. Key words: Carbon dioxide; chemotaxis; C. elegans; hookworms; nematodes; parasitic nematodes; sensory behaviour; Strongyloides Introduction Author for correspondence: Carbon dioxide (CO2) is an important sensory cue for animals across diverse phyla, including Elissa A. Hallem, E-mail: [email protected] Nematoda (Lahiri and Forster, 2003; Shusterman and Avila, 2003; Bensafi et al., 2007; Smallegange et al., 2011; Carrillo and Hallem, 2015). While the CO2 concentration in ambient air is approximately 0.038% (Scott, 2011), many nematodes encounter much higher levels of CO2 in their microenvironment during the course of their life cycles. -
Nematodes As Biocontrol Agents This Page Intentionally Left Blank Nematodes As Biocontrol Agents
Nematodes as Biocontrol Agents This page intentionally left blank Nematodes as Biocontrol Agents Edited by Parwinder S. Grewal Department of Entomology Ohio State University, Wooster, Ohio USA Ralf-Udo Ehlers Department of Biotechnology and Biological Control Institute for Phytopathology Christian-Albrechts-University Kiel, Raisdorf Germany David I. Shapiro-Ilan United States Department of Agriculture Agriculture Research Service Southeastern Fruit and Tree Nut Research Laboratory, Byron, Georgia USA CABI Publishing CABI Publishing is a division of CAB International CABI Publishing CABI Publishing CAB International 875 Massachusetts Avenue Wallingford 7th Floor Oxfordshire OX10 8DE Cambridge, MA 02139 UK USA Tel: þ44 (0)1491 832111 Tel: þ1 617 395 4056 Fax: þ44 (0)1491 833508 Fax: þ1 617 354 6875 E-mail: [email protected] E-mail: [email protected] Web site: www.cabi-publishing.org ßCAB International 2005. All rights reserved. No part of this publication may be reproduced in any form or by any means, electronically, mech- anically, by photocopying, recording or otherwise, without the prior permission of the copyright owners. A catalogue record for this book is available from the British Library, London, UK. Library of Congress Cataloging-in-Publication Data Nematodes as biocontrol agents / edited by Parwinder S. Grewal, Ralf- Udo Ehlers, David I. Shapiro-Ilan. p. cm. Includes bibliographical references and index. ISBN 0-85199-017-7 (alk. paper) 1. Nematoda as biological pest control agents. I. Grewal, Parwinder S. II. Ehlers, Ralf-Udo. III. Shaprio-Ilan, David I. SB976.N46N46 2005 632’.96–dc22 2004030022 ISBN 0 85199 0177 Typeset by SPI Publisher Services, Pondicherry, India Printed and bound in the UK by Biddles Ltd., King’s Lynn This volume is dedicated to Dr Harry K.