Evolution of Developmental Programs in Volvox (Chlorophyta)1
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Volvox Carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1*
Klein et al. BMC Biology (2017) 15:111 DOI 10.1186/s12915-017-0450-y RESEARCH ARTICLE Open Access Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1* Abstract Background: One of evolution’s most important achievements is the development and radiation of multicellular organisms with different types of cells. Complex multicellularity has evolved several times in eukaryotes; yet, in most lineages, an investigation of its molecular background is considerably challenging since the transition occurred too far in the past and, in addition, these lineages evolved a large number of cell types. However, for volvocine green algae, such as Volvox carteri, multicellularity is a relatively recent innovation. Furthermore, V. carteri shows a complete division of labor between only two cell types – small, flagellated somatic cells and large, immotile reproductive cells. Thus, V. carteri provides a unique opportunity to study multicellularity and cellular differentiation at the molecular level. Results: This study provides a whole transcriptome RNA-Seq analysis of separated cell types of the multicellular green alga V. carteri f. nagariensis to reveal cell type-specific components and functions. To this end, 246 million quality filtered reads were mapped to the genome and valid expression data were obtained for 93% of the 14,247 gene loci. In the subsequent search for protein domains with assigned molecular function, we identified 9435 previously classified domains in 44% of all gene loci. Furthermore, in 43% of all gene loci we identified 15,254 domains that are involved in biological processes. All identified domains were investigated regarding cell type-specific expression. -
Flagellar, Cellular and Organismal Polarity in Volvox Carteri
SUNY Geneseo KnightScholar Biology Faculty/Staff Works Department of Biology 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops SUNY Geneseo Follow this and additional works at: https://knightscholar.geneseo.edu/biology Recommended Citation Hoops H.J. (1993) Flagellar, cellular and organismal polarity in Volvox carteri. Journal of Cell Science 104: 105-117. doi: This Article is brought to you for free and open access by the Department of Biology at KnightScholar. It has been accepted for inclusion in Biology Faculty/Staff Works by an authorized administrator of KnightScholar. For more information, please contact [email protected]. Journal of Cell Science 104, 105-117 (1993) 105 Printed in Great Britain © The Company of Biologists Limited 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops Department of Biology, 1 Circle Drive, SUNY-Genesco, Genesco, NY 14454, USA SUMMARY It has previously been shown that the flagellar appara- reorientation of flagellar apparatus components. This tus of the mature Volvox carteri somatic cell lacks the reorientation also results in the movement of the eye- 180˚ rotational symmetry typical of most unicellular spot from a position nearer one of the flagellar bases to green algae. This asymmetry has been postulated to be a position approximately equidistant between them. By the result of rotation of each half of the flagellar appa- analogy to Chlamydomonas, the anti side of the V. car - ratus. Here it is shown that V. carteri axonemes contain teri somatic cell faces the spheroid anterior, the syn side polarity markers that are similar to those found in faces the spheroid posterior. -
Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes
Current Biology 21, 328–333, February 22, 2011 ª2011 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2011.01.037 Report Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes Cheong Xin Chan,1,5 Eun Chan Yang,2,5 Titas Banerjee,1 sequences in our local database, in which we included the Hwan Su Yoon,2,* Patrick T. Martone,3 Jose´ M. Estevez,4 23,961 predicted proteins from C. tuberculosum (see Table and Debashish Bhattacharya1,* S1 available online). Of these hits, 9,822 proteins (72.1%, 1Department of Ecology, Evolution, and Natural Resources including many P. cruentum paralogs) were present in C. tuber- and Institute of Marine and Coastal Sciences, Rutgers culosum and/or other red algae, 6,392 (46.9%) were shared University, New Brunswick, NJ 08901, USA with C. merolae, and 1,609 were found only in red algae. A total 2Bigelow Laboratory for Ocean Sciences, West Boothbay of 1,409 proteins had hits only to red algae and one other Harbor, ME 04575, USA phylum. Using this repertoire, we adopted a simplified recip- 3Department of Botany, University of British Columbia, 6270 rocal BLAST best-hits approach to study the pattern of exclu- University Boulevard, Vancouver, BC V6T 1Z4, Canada sive gene sharing between red algae and other phyla (see 4Instituto de Fisiologı´a, Biologı´a Molecular y Neurociencias Experimental Procedures). We found that 644 proteins showed (IFIBYNE UBA-CONICET), Facultad de Ciencias Exactas y evidence of exclusive gene sharing with red algae. Of these, Naturales, Universidad de Buenos Aires, 1428 Buenos Aires, 145 (23%) were found only in red + green algae (hereafter, Argentina RG) and 139 (22%) only in red + Alveolata (Figure 1A). -
Algal Sex Determination and the Evolution of Anisogamy James Umen, Susana Coelho
Algal Sex Determination and the Evolution of Anisogamy James Umen, Susana Coelho To cite this version: James Umen, Susana Coelho. Algal Sex Determination and the Evolution of Anisogamy. Annual Review of Microbiology, Annual Reviews, 2019, 73 (1), 10.1146/annurev-micro-020518-120011. hal- 02187088 HAL Id: hal-02187088 https://hal.sorbonne-universite.fr/hal-02187088 Submitted on 17 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Annu. Rev. Microbiol. 2019. 73:X–X https://doi.org/10.1146/annurev-micro-020518-120011 Copyright © 2019 by Annual Reviews. All rights reserved Umen • Coelho www.annualreviews.org • Algal Sexes and Mating Systems Algal Sex Determination and the Evolution of Anisogamy James Umen1 and Susana Coelho2 1Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA; email: [email protected] 2Sorbonne Université, UPMC Université Paris 06, CNRS, Algal Genetics Group, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff, France [**AU: Please write the entire affiliation in French or write it all in English, rather than a combination of English and French**] ; email: [email protected] Abstract Algae are photosynthetic eukaryotes whose taxonomic breadth covers a range of life histories, degrees of cellular and developmental complexity, and diverse patterns of sexual reproduction. -
Algae of the Genus Volvox (Chlorophyta) in Sub-Extreme Habitats T A.G
Short Communication T REPRO N DU The International Journal of Plant Reproductive Biology 12(2) July, 2020, pp.156-158 LA C P T I F V O E B Y T I DOI 10.14787/ijprb.2020 12.2. O E I L O C G O S I S T E S H Algae of the genus Volvox (Chlorophyta) in sub-extreme habitats T A.G. Desnitskiy Department of Embryology, Saint-Petersburg State University, Saint-Petersburg, 199034, Universitetskaya nab. 7/9, Russia e-mail: [email protected]; [email protected] Received: 18. 05. 2020; Revised: 08. 06. 2020; Accepted and Published online: 15. 06. 2020 ABSTRACT Literature data on the life of green colonial algae of the genus Volvox (Chlorophyta) in sub-extreme habitats (polar, sub-polar and mountain regions) are critically considered. Very few species (primarily homothallic Volvox aureus) are able to thrive in such conditions. Keywords : Geographical distribution, reproduction, sub-extreme habitats, Volvox. The genus Volvox Linnaeus (Volvocaceae, Chlorophyta) Peru (South America) at the elevation of more than five includes more than 20 species of freshwater flagellate algae thousand meters above sea level seems to be doubtful. The (Nozaki et al. 2015), providing an opportunity to study the illustration from this article (which focuses mainly on developmental mechanisms in a relatively simple system diatoms) shows a spherical colony with a diameter of about 14 consisting of two cellular types (somatic and reproductive). μm, consisting of several hundred very small cells (Fritz et al. Volvox carteri f. nagariensis Iyengar is a valuable model of 2015, p. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
A Taxonomic Reassessment of Chlamydomonas Meslinii (Volvocales, Chlorophyceae) with a Description of Paludistella Gen.Nov
Phytotaxa 432 (1): 065–080 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.432.1.6 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. HANI SUSANTI1,6, MASAKI YOSHIDA2, TAKESHI NAKAYAMA2, TAKASHI NAKADA3,4 & MAKOTO M. WATANABE5 1Life Science Innovation, School of Integrative and Global Major, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Japan. 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan. 4Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan. 5Algae Biomass Energy System Development and Research Center, University of Tsukuba. 6Research Center for Biotechnology, Indonesian Institute of Sciences, Jl. Raya Bogor KM 46 Cibinong West Java, Indonesia. Corresponding author: [email protected] Abstract Chlamydomonas (Volvocales, Chlorophyceae) is a large polyphyletic genus that includes numerous species that should be classified into independent genera. The present study aimed to examine the authentic strain of Chlamydomonas meslinii and related strains based on morphological and molecular data. All the strains possessed an asteroid chloroplast with a central pyrenoid and hemispherical papilla; however, they were different based on cell and stigmata shapes. Molecular phylogenetic analyses based on 18S rDNA, atpB, and psaB indicated that the strains represented a distinct subclade in the clade Chloromonadinia. The secondary structure of ITS-2 supported the separation of the strains into four species. -
Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes
G C A T T A C G G C A T genes Article Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes Yuxin Hu 1,2, Weiyue Xing 1,2, Zhengyu Hu 3 and Guoxiang Liu 1,* 1 Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] (Y.H.); [email protected] (W.X.) 2 School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China 3 State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] * Correspondence: [email protected]; Tel.: +86-027-6878-0576 Received: 11 December 2019; Accepted: 15 January 2020; Published: 20 January 2020 Abstract: We sequenced the mitochondrial genome of six colonial volvocine algae, namely: Pandorina morum, Pandorina colemaniae, Volvulina compacta, Colemanosphaera angeleri, Colemanosphaera charkowiensi, and Yamagishiella unicocca. Previous studies have typically reconstructed the phylogenetic relationship between colonial volvocine algae based on chloroplast or nuclear genes. Here, we explore the validity of phylogenetic analysis based on mitochondrial protein-coding genes. Wefound phylogenetic incongruence of the genera Yamagishiella and Colemanosphaera. In Yamagishiella, the stochastic error and linkage group formed by the mitochondrial protein-coding genes prevent phylogenetic analyses from reflecting the true relationship. In Colemanosphaera, a different reconstruction approach revealed a different phylogenetic relationship. This incongruence may be because of the influence of biological factors, such as incomplete lineage sorting or horizontal gene transfer. We also analyzed the substitution rates in the mitochondrial and chloroplast genomes between colonial volvocine algae. -
The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum Within Green Plants
Downloaded from orbit.dtu.dk on: Oct 10, 2021 The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng Total number of authors: 24 Published in: Nature Ecology & Evolution Link to article, DOI: 10.1038/s41559-020-1221-7 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., ... Liu, H. (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution, 4, 1220-1231. https://doi.org/10.1038/s41559-020-1221-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Characterization of Hydrogen Metabolism in the Multicellular Green Alga Volvox Carteri
RESEARCH ARTICLE Characterization of Hydrogen Metabolism in the Multicellular Green Alga Volvox carteri Adam J. Cornish1¤a, Robin Green1¤b¤c, Katrin Gärtner1, Saundra Mason1, Eric L. Hegg1* 1 Great Lakes Bioenergy Research Center and the Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, Michigan, United States of America ¤a Current address: Department of Physiology, Johns Hopkins University, Baltimore, Maryland, United States of America ¤b Current address: Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America ¤c Current address: Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America * [email protected] Abstract Hydrogen gas functions as a key component in the metabolism of a wide variety of microor- ganisms, often acting as either a fermentative end-product or an energy source. The number OPEN ACCESS of organisms reported to utilize hydrogen continues to grow, contributing to and expanding Citation: Cornish AJ, Green R, Gärtner K, Mason S, our knowledge of biological hydrogen processes. Here we demonstrate that Volvox carteri f. Hegg EL (2015) Characterization of Hydrogen Metabolism in the Multicellular Green Alga Volvox nagariensis, a multicellular green alga with differentiated cells, evolves H2 both when supplied carteri. PLoS ONE 10(4): e0125324. doi:10.1371/ with an abiotic electron donor and under physiological conditions. The genome of Volvox car- journal.pone.0125324 teri contains two genes encoding putative [FeFe]-hydrogenases (HYDA1 and HYDA2), and Academic Editor: James G. Umen, Donald Danforth the transcripts for these genes accumulate under anaerobic conditions. The HYDA1 and Plant Science Center, UNITED STATES HYDA2 gene products were cloned, expressed, and purified, and both are functional [FeFe]- Received: September 15, 2014 hydrogenases. -
Evolution of the Two Sexes Under Internal Fertilization and Alternative Evolutionary Pathways
vol. 193, no. 5 the american naturalist may 2019 Evolution of the Two Sexes under Internal Fertilization and Alternative Evolutionary Pathways Jussi Lehtonen1,* and Geoff A. Parker2 1. School of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, 2006 New South Wales, Australia; and Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, 2052 New South Wales, Australia; 2. Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Submitted September 8, 2018; Accepted November 30, 2018; Electronically published March 18, 2019 Online enhancements: supplemental material. abstract: ogy. It generates the two sexes, males and females, and sexual Transition from isogamy to anisogamy, hence males and fl females, leads to sexual selection, sexual conflict, sexual dimorphism, selection and sexual con ict develop from it (Darwin 1871; and sex roles. Gamete dynamics theory links biophysics of gamete Bateman 1948; Parker et al. 1972; Togashi and Cox 2011; limitation, gamete competition, and resource requirements for zygote Parker 2014; Lehtonen et al. 2016; Hanschen et al. 2018). survival and assumes broadcast spawning. It makes testable predic- The volvocine green algae are classically the group used to tions, but most comparative tests use volvocine algae, which feature study both the evolution of multicellularity (e.g., Kirk 2005; internal fertilization. We broaden this theory by comparing broadcast- Herron and Michod 2008) and transitions from isogamy to spawning predictions with two plausible internal-fertilization scenarios: gamete casting/brooding (one mating type retains gametes internally, anisogamy and oogamy (e.g., Knowlton 1974; Bell 1982; No- the other broadcasts them) and packet casting/brooding (one type re- zaki 1996; da Silva 2018; da Silva and Drysdale 2018; Han- tains gametes internally, the other broadcasts packets containing gametes, schen et al. -
Chlamydomonas Schloesseri Sp. Nov. (Chlamydophyceae, Chlorophyta) Revealed by Morphology, Autolysin Cross Experiments, and Multiple Gene Analyses
Phytotaxa 362 (1): 021–038 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2018 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.362.1.2 Chlamydomonas schloesseri sp. nov. (Chlamydophyceae, Chlorophyta) revealed by morphology, autolysin cross experiments, and multiple gene analyses THOMAS PRÖSCHOLD1, TATYANA DARIENKO2,3, LOTHAR KRIENITZ4 & ANNETTE W. COLEMAN5 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Experimental Phycology and Culture Collection of Algae, D-37073 Göttingen, Germany 3 M.G. Kholodny Institute of Botany, National Academy Science of Ukraine, Kyiv 01601, Ukraine 4 Leibniz Institute of Freshwater Ecology and Inland Fisheries, Department of Limnology of Stratified Lakes, D-16775 Stechlin-Neu- globsow, Germany 5 Brown University, Division of Biology and Medicine, Providence RI-02912, USA Correspondence: Thomas Pröschold, E-mail: [email protected] Abstract Chlamydomonas in the traditional sense is one of the largest green algal genera, comprising more than 500 described species. However, since the designation of the model organism C. reinhardtii as conserved type of this genus in 2007, only two spe- cies remained in Chlamydomonas. Investigations of three new strains isolated from soil samples, which were collected near Lake Nakuru (Kenya), demonstrated that the isolates represent a new species of Chlamydomonas. Phylogenetic analyses of nuclear SSU and ITS rDNA and plastid-coding rbcL sequences have clearly revealed that this species is closely related to C. reinhardtii and C. incerta. These results were confirmed by cross experiments of sporangium wall autolysins (VLE). All species belonged to the VLE group 1 sensu Schlösser.