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Evaluation of a Loop-Mediated Isothermal Amplification Method For
Journal of Microbiological Methods 63 (2005) 36–44 www.elsevier.com/locate/jmicmeth Evaluation of a loop-mediated isothermal amplification method for rapid detection of channel catfish Ictalurus punctatus important bacterial pathogen Edwardsiella ictaluri Hung-Yueh YehT, Craig A. Shoemaker, Phillip H. Klesius United States Department of Agriculture, Agricultural Research Service, Aquatic Animal Health Research Unit, Post Office Box 952, Auburn, AL 36831-0952, USA Received 23 November 2004; received in revised form 17 February 2005; accepted 17 February 2005 Available online 31 March 2005 Abstract Channel catfish Ictalurus punctatus infected with Edwardsiella ictaluri results in $40–50 million annual losses in profits to catfish producers. Early detection of this pathogen is necessary for disease control and reduction of economic loss. In this communication, the loop-mediated isothermal amplification method (LAMP) that amplifies DNA with high specificity and rapidity at an isothermal condition was evaluated for rapid detection of E. ictaluri. A set of four primers, two outer and two inner, was designed specifically to recognize the eip18 gene of this pathogen. The LAMP reaction mix was optimized. Reaction temperature and time of the LAMP assay for the eip18 gene were also optimized at 65 8C for 60 min, respectively. Our results show that the ladder-like pattern of bands sizes from 234 bp specifically to the E. ictaluri gene was amplified. The detection limit of this LAMP assay was about 20 colony forming units. In addition, this optimized LAMP assay was used to detect the E. ictaluri eip18 gene in brains of experimentally challenged channel catfish. Thus, we concluded that the LAMP assay can potentially be used for rapid diagnosis in hatcheries and ponds. -
Common Lexical Semantics in Dalabon Ethnobiological Classification
This item is Chapter 15 of Language, land & song: Studies in honour of Luise Hercus Editors: Peter K. Austin, Harold Koch & Jane Simpson ISBN 978-0-728-60406-3 http://www.elpublishing.org/book/language-land-and-song Common lexical semantics in Dalabon ethnobiological classification Sarah Cutfield Cite this item: Sarah Cutfield (2016). Common lexical semantics in Dalabon ethnobiological classification. In Language, land & song: Studies in honour of Luise Hercus, edited by Peter K. Austin, Harold Koch & Jane Simpson. London: EL Publishing. pp. 209-227 Link to this item: http://www.elpublishing.org/PID/2015 __________________________________________________ This electronic version first published: March 2017 © 2016 Sarah Cutfield ______________________________________________________ EL Publishing Open access, peer-reviewed electronic and print journals, multimedia, and monographs on documentation and support of endangered languages, including theory and practice of language documentation, language description, sociolinguistics, language policy, and language revitalisation. For more EL Publishing items, see http://www.elpublishing.org 15 Common lexical semantics in Dalabon ethnobiological classification Sarah Cutfield School of Literature, Languages and Linguistics & The ARC Centre of Excellence for the Dynamics of Language, Australian National University 1. Introduction1 This paper is an analysis of the common lexical semantics in ethnobiological classification in Dalabon (Gunwinyguan, non-Pama-Nyungan), based on the intensive documentation in Bordulk et al. (2012), who cover 821 names for over 550 species, an unusually high number of named species for languages in Australia’s Top End (GW pers. com.). Dalabon shares many of the common formal and semantic features described for ethnoclassification in Australian languages. I present an overview and detailed exemplification of these phenomena in Dalabon, and highlight data which do not pattern according to common observations of ‘formal linguistic similarities indicate semiotic relationship’ in Australian languages. -
Evolutionary Genomics of a Plastic Life History Trait: Galaxias Maculatus Amphidromous and Resident Populations
EVOLUTIONARY GENOMICS OF A PLASTIC LIFE HISTORY TRAIT: GALAXIAS MACULATUS AMPHIDROMOUS AND RESIDENT POPULATIONS by María Lisette Delgado Aquije Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia August 2021 Dalhousie University is located in Mi'kma'ki, the ancestral and unceded territory of the Mi'kmaq. We are all Treaty people. © Copyright by María Lisette Delgado Aquije, 2021 I dedicate this work to my parents, María and José, my brothers JR and Eduardo for their unconditional love and support and for always encouraging me to pursue my dreams, and to my grandparents Victoria, Estela, Jesús, and Pepe whose example of perseverance and hard work allowed me to reach this point. ii TABLE OF CONTENTS LIST OF TABLES ............................................................................................................ vii LIST OF FIGURES ........................................................................................................... ix ABSTRACT ...................................................................................................................... xii LIST OF ABBREVIATION USED ................................................................................ xiii ACKNOWLEDGMENTS ................................................................................................ xv CHAPTER 1. INTRODUCTION ....................................................................................... 1 1.1 Galaxias maculatus .................................................................................................. -
AU-COM2017-349 Date of Issue 27 April 2017 Date of Expiry 30 December 2019
Environment Protection and Biodiversity Conservation Regulations 2000 Access to Biological Resources in a Commonwealth Area for Non-Commercial Purposes Permit number AU-COM2017-349 Date of issue 27 April 2017 Date of expiry 30 December 2019 Name and organisation of person to Dr Alison King and Dion Wedd whom the permit is issued: Charles Darwin University c/-RIEL, S of Environment, Charles Darwin University, Ellengowan Drive, Brinkin NT 0909 Provision of Regulations for which permit issued 8A.06 Collection of biological material from Kakadu National Park – Charles Darwin University Access is permitted to the following location: Mary River, Kakadu National Park to collect the following biological resources for non-commercial purposes: a maximum of the following: Common Name Scientific Name Amount/ Volume Longfin glassfish Ambassis interrupta 20 Macleay's glassfish Ambassis macleayi 20 Vachell’s Glassfish Ambassis vachellii 20 Northwest glassfish Ambassis sp. 50 Barred Grunter Amniataba percoides 150 short fin eel Anguilla bicolor 20 Toothless catfish Anodontiglanis dahli 20 Snub-nosed garfish Arrhamphus sclerolepis 20 Freshwater sole Brachirus selheimi 20 Crimson-tipped gudgeon Butis butis 20 bull shark Carcharhinus leucas 20 smallmouth catfish Cinetodus frogatti 20 Fly-specked hardyhead Craterocephalus stercusmuscarum 20 Strawman hardyhead Craterocephalus stramineus 200 Anchovy sp. Engraulidae 20 silver biddy Gerres filamentosus 20 Mouth almighty Glossamia aprion 50 Permit Number: AU-COM2017-349 Page 1 of 4 Environment Protection and -
Fishes of the King Edward River in the Kimberley Region, Western Australia
Records of the Western Australian Museum 25: 351–368 (2010). Fishes of the King Edward River in the Kimberley region, Western Australia David L. Morgan Freshwater Fish Group, Centre for Fish and Fisheries Research, Murdoch University, Murdoch, Western Australia 6150, Australia. E-mail: [email protected] Abstract – The King Edward River, in the far north of the Kimberley region of Western Australia drains approximately 10,000 km2 and discharges into the Timor Sea near the town of Kalumburu. This study represents an ichthyological survey of the river’s freshwaters and revealed that the number of freshwater fishes of the King Edward River is higher than has previously been recorded for a Western Australian river. Twenty-six strictly freshwater fish species were recorded, which is three species higher than the much larger Fitzroy River in the southern Kimberley. The study also identified a number of range extensions, including Butler’s Grunter and Shovel-nosed Catfish to the west, and the Slender Gudgeon to the north and east. A possibly undescribed species of glassfish, that differs morphologically from described species in arrangement of head spines, fin rays, as well as relative body measurements, is reported. A considerable proportion of Jenkins’ Grunter, which is widespread throughout the system but essentially restricted to main channel sites, had ‘blubber-lips’. There were significant differences in the prevailing fish fauna of the different reaches of the King Edward River system. Thus fish associations in the upper King Edward River main channel were significantly different to those in the tributaries and the main channel of the Carson River. -
Status Review, Disease Risk Analysis and Conservation Action Plan for The
Status Review, Disease Risk Analysis and Conservation Action Plan for the Bellinger River Snapping Turtle (Myuchelys georgesi) December, 2016 1 Workshop participants. Back row (l to r): Ricky Spencer, Bruce Chessman, Kristen Petrov, Caroline Lees, Gerald Kuchling, Jane Hall, Gerry McGilvray, Shane Ruming, Karrie Rose, Larry Vogelnest, Arthur Georges; Front row (l to r) Michael McFadden, Adam Skidmore, Sam Gilchrist, Bruno Ferronato, Richard Jakob-Hoff © Copyright 2017 CBSG IUCN encourages meetings, workshops and other fora for the consideration and analysis of issues related to conservation, and believes that reports of these meetings are most useful when broadly disseminated. The opinions and views expressed by the authors may not necessarily reflect the formal policies of IUCN, its Commissions, its Secretariat or its members. The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. Jakob-Hoff, R. Lees C. M., McGilvray G, Ruming S, Chessman B, Gilchrist S, Rose K, Spencer R, Hall J (Eds) (2017). Status Review, Disease Risk Analysis and Conservation Action Plan for the Bellinger River Snapping Turtle. IUCN SSC Conservation Breeding Specialist Group: Apple Valley, MN. Cover photo: Juvenile Bellinger River Snapping Turtle © 2016 Brett Vercoe This report can be downloaded from the CBSG website: www.cbsg.org. 2 Executive Summary The Bellinger River Snapping Turtle (BRST) (Myuchelys georgesi) is a freshwater turtle endemic to a 60 km stretch of the Bellinger River, and possibly a portion of the nearby Kalang River in coastal north eastern New South Wales (NSW). -
Edwardsiellosis, an Emerging Zoonosis of Aquatic Animals
Editorial provided by ZENODO View metadata, citation and similar papers at core.ac.uk CORE brought to you by Edwardsiellosis, an Emerging Zoonosis of Aquatic Animals Santander M Javier* The Biodesign Institute, Center for Infectious Diseases and Vaccinology. Arizona State University. * Corresponding author Biohelikon: Immunity & Diseases 2012, 1(1): http://biohelikon.org © 2012 by Biohelikon Abstract Edwardsiellosis, an Emerging Zoonosis of Aquatic Animals References Abstract Zoonotic diseases from aquatic animals have not received much attention even though contact between humans and aquatic animals and their pathogens have increased significantly in the last several decades. Currently, Edwardsiella tarda, the causative agent of Edwardsiellosis in humans, is considered an emerging gastrointestinal zoonotic pathogen, which is acquired from aquatic animals. However, there is little information about E. tarda pathogenesis in mammals. In contrast, significant progress has been made regarding to E. tarda fish pathogenesis. Undoubtedly, research about E. tarda pathogenesis in mammals is urgent, not only to evaluate the safety of current E. tarda live attenuated vaccines for the aquaculture industry but also to prevent emerging E. tarda human infections. Return to top Edwardsiellosis, an Emerging Zoonosis of Aquatic Animals Human food and health are inextricably linked to animal production. This link between humans and animals is particularly close in developing regions of the world where animals provide transportation, clothing, and food (meat, eggs and dairy). In both developing and industrialized countries, this proximity with farm animals can lead to a serious risk to public health with severe economic consequences. A number of diseases are transmitted from animals to humans (zoonotic diseases). According to the World Health Organization (WHO), about 75% of the new infectious diseases affecting humans during the past 10 years have been caused by pathogens originating from animals and derivative products. -
Edwardsiella Tarda
Zambon et al. Journal of Medical Case Reports (2016) 10:197 DOI 10.1186/s13256-016-0975-7 CASE REPORT Open Access Near-drowning-associated pneumonia with bacteremia caused by coinfection with methicillin-susceptible Staphylococcus aureus and Edwardsiella tarda in a healthy white man: a case report Lucas Santos Zambon*, Guilherme Nader Marta, Natan Chehter, Luis Guilherme Del Nero and Marina Costa Cavallaro Abstract Background: Edwardsiella tarda is an Enterobacteriaceae found in aquatic environments. Extraintestinal infections caused by Edwardsiella tarda in humans are rare and occur in the presence of some risk factors. As far as we know, this is the first case of near-drowning-associated pneumonia with bacteremia caused by coinfection with methicillin-susceptible Staphylococcus aureus and Edwardsiella tarda in a healthy patient. Case presentation: A 27-year-old previously healthy white man had an episode of fresh water drowning after acute alcohol consumption. Edwardsiella tarda and methicillin-sensitive Staphylococcus aureus were isolated in both tracheal aspirate cultures and blood cultures. Conclusion: This case shows that Edwardsiella tarda is an important pathogen in near drowning even in healthy individuals, and not only in the presence of risk factors, as previously known. Keywords: Near drowning, Edwardsiella tarda, Pneumonia, Bacterial, Bacteremia Background Lung infections are one of the most serious complica- The World Health Organization defines drowning as tions occurring in victims of drowning [6]. They may “the process of experiencing respiratory impairment represent a diagnostic challenge as the presence of water from submersion/immersion in liquid” [1] emphasizing in the lungs hinders the interpretation of radiographic the importance of respiratory system damage in drown- images [5]. -
Edwardsiellosis
EAZWV Transmissible Disease Fact Sheet Sheet No. 80 EDWARDSIELLOSIS ANIMAL TRANS- CLINICAL FATAL TREATMENT PREVENTION GROUP MISSION SIGNS DISEASE? & CONTROL AFFECTED Freshwater Unclear Vary with the Not necessarily Systemic Stress reduction and marine species: antibiotic (including good fish, ulcerative treatment, water quality), especially in dermatitis, improvement hygiene warm fibrinous of water environment peritonitis, quality, stress granulomatous reduction lesions in multiple organs Fact sheet compiled by Last update Willem Schaftenaar, Head of the Veterinary Januari 2009 Dept. of the Rotterdam Zoo, The Netherlands Fact sheet reviewed by Dr. O. Haenen, Head of Fish Diseases Laboratory, CVI-Lelystad, P.O. Box 65, 8200 AB Lelystad, The Netherlands. Phone: + 31 320 238 352 Dr. T. Wahli, National Fish Disease Laboratory, Centre for Fish and Wildlife Health, Institute of Animal Pathology, University of Berne, Länggassstr. 122, CH-3012 Berne, Switzerland. Phone: +41 31 631 24 61 Susceptible animal groups Fresh water and marine fish. Most diseases seem to occur at higher temperatures. Examples of affected species are channel catfish, Chinook salmon, Japanese eel, striped bass, striped mullet, Japanese flounder, yellowtail, tilapia, goldfish, carp, red sea bream. Reptiles and amphibians are common carriers. Causative organism Edwardsiella tarda. Bacterium, member of the family Enterobacteriaceae, facultatively anaerobic Gram negative motile rod. Zoonotic potential Yes. E. tarda is a zoonotic problem and is a serious cause of gastroenteritis in humans. It has also been implicated in meningitis, biliary tract infections, peritonitis, liver and intra-abdominal abscesses, wound infections and septicaemia. It has been often isolated from catfish fillets in processing plants and can spread to man via the oral route or a penetrating wound. -
Movements of Forktail Catfish in the Daly River, Northern Territory, As Determined by Otolith Chemistry Analysis
Movements of Forktail Catfish in the Daly River, Northern Territory, as Determined by Otolith Chemistry Analysis Thesis submitted by Sally Catherine Oughton (BSc/BComm) in partial fulfilment of the requirements for the Degree of Bachelor of Science with Honours in the School of Environmental and Life Sciences, Faculty of Engineering, Health, Science and the Environment, Charles Darwin University. June 2014. Statement of Authorship I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at any university or other institute of tertiary education. Information derived from the published and unpublished work of others has been acknowledged in the text and a list of references given. Sally Catherine Oughton Cover Illustration: Daly River at Galloping Jacks (left), and an otolith section magnified under transmitted light. I Abstract Although the vast majority of fishes spend their entire lives in either fresh water or the sea, some are capable of moving across salinity gradients. “Diadromous” species migrate between fresh and salt water on a regular, well-defined basis, whereas “euryhaline” species move across salinity gradients freely and not necessarily at particular life history stages. These species are particularly vulnerable to anthropogenic developments that regulate flow and diminish connectivity between freshwater and marine biomes, such as the construction of dams and extraction of water for agricultural use. As a result, diadromous and euryhaline species are considered among the most threatened vertebrate groups in the world. Studying fish movement behaviour provides vital information on the importance of different aquatic habitats and species’ ecological roles, and improves environmental management outcomes for diadromous species. -
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/Ijsem.0.001485
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/ijsem.0.001485 Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Mobolaji Adeolu,† Seema Alnajar,† Sohail Naushad and Radhey S. Gupta Correspondence Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Radhey S. Gupta L8N 3Z5, Canada [email protected] Understanding of the phylogeny and interrelationships of the genera within the order ‘Enterobacteriales’ has proven difficult using the 16S rRNA gene and other single-gene or limited multi-gene approaches. In this work, we have completed comprehensive comparative genomic analyses of the members of the order ‘Enterobacteriales’ which includes phylogenetic reconstructions based on 1548 core proteins, 53 ribosomal proteins and four multilocus sequence analysis proteins, as well as examining the overall genome similarity amongst the members of this order. The results of these analyses all support the existence of seven distinct monophyletic groups of genera within the order ‘Enterobacteriales’. In parallel, our analyses of protein sequences from the ‘Enterobacteriales’ genomes have identified numerous molecular characteristics in the forms of conserved signature insertions/deletions, which are specifically shared by the members of the identified clades and independently support their monophyly and distinctness. Many of these groupings, either in part or in whole, have been recognized in previous evolutionary studies, but have not been consistently resolved as monophyletic entities in 16S rRNA gene trees. The work presented here represents the first comprehensive, genome- scale taxonomic analysis of the entirety of the order ‘Enterobacteriales’. -
Freshwater Fishes of Three Tributaries of the Pentecost River, Kimberley
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 30 064–071 (2015) DOI: 10.18195/issn.0312-3162.30(1).2015.064-071 SHORT COMMUNICATION Freshwater fi shes of three tributaries of the Pentecost River, Kimberley, Western Australia Glenn I. Moore1,* and Michael P. Hammer2 1 Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia, 6986, Australia. 2 Natural Sciences, Museum and Art Gallery of the Northern Territory, GPO Box 4646, Darwin, Northern Territory, 0820, Australia. * Coresponding author: [email protected] KEYWORDS: Durack, Karunjie, Northern Province, Durack River, Bindoola Creek, Salmond River INTRODUCTION Here we report on a recent survey of tributaries of Freshwater fish diversity in Australia increases the Pentecost River catchment in the east Kimberley dramatically in the tropical north when compared to that fl ow through Karunjie and Durack River stations. The only published survey of freshwater fi shes in these southern parts of the continent (Unmack 2001; Allen tributaries is that of Allen and Leggett (1990), whose et al. 2002) and there is still much to be documented in collections included only six species from two sites (50, terms of species diversity, distributions, systematics and 51) in the Durack River on Karunjie Station. Ten species ecology. New, novel forms continue to be recorded from were collected from Durack River and Bindoola Creek remote regions of Australia (e.g. Pusey and Kennard by G.R. Allen in 1977 (seven of which were additional 2001; Morgan et al. 2013, 2014a; Raadik 2014), and to Allen and Leggett 1990) and are held in the collection recent research using genetic techniques suggest that of the Western Australian Museum (WAM).