1 Chemoinformatic analysis of psychotropic and antihistaminic drugs in the light 2 of experimental anti-SARS-CoV-2 activities 3 4 Villoutreix BO1*, Krishnamoorthy R2, Tamouza R2, Leboyer M2, Beaune PH3, 5 6 7 8 1INSERM 1141, NeuroDiderot, Université de Paris, Hôpital Robert-Debré, F-75019 Paris, France
9 2Université Paris Est Créteil, INSERM U955, IMRB, Laboratoire Neuro-psychia- trie translationnelle, 10 AP-HP, Département Medico-Universitaire de Psychiatrie et d’Addictologie (DMU ADAPT), Hôpital 11 Henri Mondor, Fondation FondaMental, F-94010 Créteil, France
12 3INSERM U1138 Centre de recherche des Cordeliers 75006 Paris, and Université de Paris, Paris, France
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30 Introduction: There is an urgent need to identify therapies that prevent SARS-CoV-2 infection 31 and improve the outcome of COVID-19 patients.
32 Objective: We proposed, before summer 2020, that cationic amphiphilic psychotropic and 33 antihistaminic drugs could protect psychiatric patients from SARS-CoV-2 infection based upon 34 clinical observations. At that time, experimental in vitro data on SARS-CoV-2 were missing.
35 Methods: Open high-throughput screening results are now available at the NCATS COVID19 36 portal and it is possible to investigate again our initial hypothesis using simple chemoinformatics 37 approaches but this time with in vitro data on SARS-CoV-2.
38 Results and Discussion: We here revisit our hypothesis in the light of SARS-CoV-2 experimental 39 screening results and propose that several cationic amphiphilic psychotropic and antihistaminic 40 drugs could possibly protect people from SARS-CoV-2 infection; some of these molecules have 41 very limited adverse effects and could eventually be used as prophylactic drugs. Further, recent 42 analysis of electronic health records reported by other research groups, including drug 43 combinations, also suggest that a small list of molecules could be of interest at different stages of 44 the disease progression. Taken together, these observations suggest that clinical trials are now 45 needed to fully evaluate the potentials of these molecules.
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48 Keywords: chemoinformatics, Covid-19, high-throughput screening, phenothiazine, 49 prophylaxis
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2 55 Introduction
56 Rapid pandemic spread of SARS-CoV-2 virus and the resulting COVID-19 has caused havoc
57 worldwide and continue to do so with transmission rate spikes. Hence there is an urgent need to
58 identify potential pharmacological prophylactic/therapeutic interventions both to prevent SARS-
59 CoV-2 infection and to improve the clinical outcome of COVID-19 patients. At present, only
60 vaccines offer hope but small molecules interfering with SARS-CoV-2 infection would have an
61 added value and could be cost effective. The shortest path to discover such compounds is via drug
62 repurposing approaches but it should be mentioned, as reported by Edwards1, that drug repurposing
63 seldom works in Human if there are no clinical observations as background rationale and/or in the
64 absence of a reasonable mechanistic hypothesis. Early 2020, we hypothesized, based upon clinical
65 observations made in several hospitals including the large psychiatric department of the Henri
66 Mondor hospital, Créteil (Paris area), France, and confirmed in several other hospitals, that
67 therapeutic molecules used in the treatment of psychiatric patients might have protected them from
68 SARS-CoV-2 infection and hence explained the paucity of admission to specialized COVID units.2
69 In order to gain knowledge about the putative molecules that could be repositioned against SARS-
70 CoV-2, we collected a list of 18 compounds most commonly prescribed in the in- and out-patient
71 Henri Mondor treatment programs (Alimemazine, Amisulpride, Aripiprazole, Cetirizine,
72 Citalopram, Clozapine, Cyamemazine, Diazepam, Escitalopram, Hydroxyzine, Lithium,
73 Lorazepam, Melatonin, Nicotine, Quetiapine, Sertraline, Valproate, and Zopiclone). Some of these
74 compounds belong to the phenothiazine class (e.g., Alimemazine and Cyamemazine), others
75 contain a benzodiazepine core (e.g., Lorazepam) or else are antihistamine drugs with, for example,
76 a core piperazine group (e.g., Cetirizine and Hydroxyzine). We investigated further these 18 drugs
77 using chemoinformatic strategies and via literature mining as it is well documented that some
3 78 molecules from these classes possess in vitro antiviral activities (reviewed in3). Indeed, ten out of
79 our 18 drugs have been reported to have in vitro antiviral activities against various types of viruses
80 including HIV, Ebola, HSV, MERS or SARS. Four were chemically close to molecules that
81 display such in vitro antiviral activity and were therefore predicted to also possess such property
82 based on “principle of similarity” commonly applied in medicinal chemistry. While the
83 psychotropic and antihistamine drugs that we were investigating belong to several chemical
84 families, we observed a common trend among these molecules. Eleven (60%) out of these 18 most
85 prescribed compounds were cationic amphiphilic drugs (CADs). CADs are molecules
86 characterized by the presence of a hydrophobic-aromatic ring system and a side chain that carries
87 one (or more) ionizable amine functional group(s) (i.e., a basic moiety). Many such compounds
88 accumulate in lysosomes or in other acidic subcellular compartments (i.e., lysosomotrophic agents,
89 a well-known molecule acting on SARS-CoV-2 in vitro at least via this mechanism, among others,
90 is the antimalarial drug hydroxychloroquine). Many CADs are therefore known to interfere with
91 intracellular trafficking (e.g., endosomal entry route, clathrin-mediated or not) and several such
92 molecules have indeed in vitro antiviral activity.4,5 CADs compounds are also known to induce
93 phospholipidosis in vitro (a lysosomal storage disorder), and 14 out of our list of 18 drugs were
94 known or predicted to induce phospholipidosis.6 These molecules are associated with intracellular
95 traffic perturbations and could play a role in SARS-CoV-2 infectivity.7
96 From these observations, presumably, many of our 18 molecules could play a role in the early
97 phases of virus life cycle. In short, early 2020, our hypothesis was that interesting compounds to
98 reposition against SARS-CoV-2 would be CAD psychotropic and antihistaminic molecules (i.e.,
99 the ones present in our list of 18 compounds or analogs that possess similar physicochemical
100 properties and chemical substructures, in our list of 18 compounds). These drugs could perturb
4 101 virus entry, for instance by interfering with normal endocytosis but could also inhibit directly or
102 indirectly the interaction between the viral Spike protein and the host ACE2 receptor (details about
103 cell entry mechanisms are reported here8). These drugs obviously bind to their primary targets (for
104 example histamine receptors, dopamine receptors, GABA(A) receptor) although the impact of
105 such interactions on COVID-19 is not clear. In addition, it is well-known that drugs can interact
106 with several targets and as such the CAD psychotropic and antihistaminic molecules are likely to
107 also bind to known (e.g., the Sigma receptors9) and unknown off-targets and act on the virus and/or
108 on the host defense mechanisms. The conclusion of our first analysis was that CAD psychotropic
109 and antihistaminic molecules could confer protection against SARS-CoV-2 infection in psychiatric
110 patients as these subjects receive as treatment a “CAD cocktail” that certainly interferes with the
111 endo-lysosomal viral machinery essential for cell entry, replication and spread to other cells2 while
112 some compounds (e.g., antihistamine drugs) could also down-regulate prominent inflammatory
113 messengers.4,10 Yet, in our first report, we also mentioned that while such drugs might protect
114 against SARS-CoV-2 infection, many of them do have concerns (e.g., toxic side effects if
115 unmonitored) and hence cannot be recommended for mass population prophylaxis and/or
116 treatment in the urgent fight against COVID-19.
117 When we reported our study about the possible protective potentials of psychotropic and
118 antihistamine drugs against SARS-CoV-2 infection2, in vitro data on SARS-CoV-2 were not
119 available. Since then, low-throughput and high-throughput screening experiments have been
120 performed (see a recent review11). To the best of our knowledge, the largest high-throughput
121 screening data open to the research/medical community is available at the NCATS COVID19
122 portal (https://opendata.ncats.nih.gov/covid19). These data involve the screening of over 10,000
123 chemical compounds. We here investigate our initial observations in the light of these new
5 124 experimental data. We thus further rationalize the potential protective effect of some psychotropic
125 and antihistamine drugs against SARS-CoV-2 infection and propose some already approved drugs
126 (with manageable/tolerable adverse effects) that could be repositioned to protect the general
127 population against COVID-19.
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129 Methods
130 Data preparation and analysis
131 The first step involved the curation and preparation of the experimental screening data. We
132 downloaded the data on SARS-CoV-2 cytopathic effect (CPE) from the NCATS COVID19 portal.
133 This assay measures the ability of a compound to reverse the cytopathic effect induced by the virus
134 in Vero E6 host cells (one of the most commonly used cell lines for studying this family of virus).
135 The assay provides valuable basic information about the ability of a compound to restore the cells’
136 function but does not provide indication about the possible mechanism of action(s) of the small
137 chemical compound under study. We also explored using the same Vero E6 cells the cytotoxic
138 effect of these molecules in a counterscreen since the observed effect of some compounds may be
139 mediated through cell viability and could lead to erroneous interpretation of the CPE results. Such
140 information on cell viability is evidently important in the applicability of such compounds in
141 clinical pharmacological interventions. Some additional data are important to take into account in
142 the present analysis and involve the effect of the chemical compounds over human fibroblasts.
143 This assay measures the host cell ATP content as a readout for cytotoxicity. When available, we
144 annotated further the CPE data with the results of this assay. To be able to quickly repurpose a
145 compound, we focused essentially on molecules that have been approved or are in clinical trials
146 (in some instances drugs are only approved for veterinary use). We thus cross-linked the CPE
6 147 sample ID numbers to drug names (e.g., international nonproprietary names), PubChem SID or
148 CID numbers12 or to ChEMBL ID numbers13 and to molecules that possess ATC (Anatomical
149 Therapeutic Chemical Classification system) codes and/or have documented therapeutic
150 indications as found in DrugBank14, DrugCentral15 and eDrug3d16. Molecules that are at the
151 preclinical stage (e.g., chemical probes) were essentially excluded via this procedure. Additionally,
152 the salts, when present in the chemical file, were deleted using the Maya chemistry toolkit17 and
153 the chemistry of the molecules was standardized using our FAF-Drugs4 web server.18 The drugs
154 in duplicate were removed. Further curation of the CPE data also involved the following: i)
155 removal of a few molecules without potency values (AC50 values are reported for this dataset, i.e.,
156 concentration for half-maximal activity19), ii) investigation of the curve class (i.e., the evaluation
157 of the quality of the dose-response curve and thus the quality of the measurements, in the CPE
158 data, (a curve class of type 4 is a flat curve indicating no activity) and maximum response (i.e.,
159 maximum response value detected in the experiment). In such assay, compounds are usually
160 considered active when the maximum response (absolute) value is above 30.20 Further, we
161 removed molecules that were found highly cytotoxic in the Vero E6 counterscreen assay. From
162 the initial CPE data containing 10,721 assessed samples (some molecules have been screened
163 several times and most are chemical probes), we ended up with a list of 198 bioactive drugs. In
164 this list of drugs, 93 were not tested for toxicity on human fibroblast and for the remaining 105
165 molecules, only one was found cytotoxic (Disulfiram, used for alcohol addiction, this molecule
166 was also removed not only because of its cytotoxic nature in these assays but also as found to be
167 a promiscuous SARS-CoV-2 main protease inhibitor21). At this stage of the analysis, we decided
168 to retain all the compounds including those not annotated for human fibroblast toxicity. We then
169 focused our attention on families of molecules that contain several members and removed some
7 170 molecules with highly specific disease indication such as Deferasirox (an oral iron chelator given
171 to patients receiving long term blood transfusions). In this last step of data curation, we grouped
172 the 198 compounds according to chemistry and disease indications and removed molecules that
173 did not fulfill our selection criteria. This step led to the selection of a final list of 161 molecules.
174 Data were then visualized with DataWarrior.22 In this list, very few molecules are only chemical
175 probes, like Calpeptin. They were kept because they are often used to assess some enzymatic
176 activities. The structural classification of chemical entities was then performed using the
177 ClassyFire application.23
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179 Results and Discussion
180 Our selected list of 161 bioactive drugs in the CPE assay (after excluding molecules that were
181 found to be highly cytotoxic in Vero E6 cells counterscreen assay) are prescribed as a treatment in
182 five major disease areas (Fig. 1). Of course, it is important to note that some of the selected drugs
183 can be given to different types of disease but we still attempted to group them into main/major
184 indications.
185 Molecules that are in the “Allergies” category (different types of allergies are involved) are here
186 all antihistamine compounds. Some of these molecules also have other properties such as anti-
187 inflammatory effects. This group of compounds include for instance Loratadine and Desloratadine
188 (e.g., allergic rhinitis), Azelastine (e.g., allergic and vasomotor rhinitis and allergic conjunctivitis)
189 and Promethazine (e.g., used for allergic reactions, nausea and vomiting). While not an
190 antihistamine molecule nor a CAD, Colchicine could be present in this group although it could
191 also be in the Cancers and Cardiovascular categories. It is an anti-inflammatory drug that could
192 reduce the risk of complications and death from COVID-19 (communication in January 2021 by
8 193 Dr. J.C. Tardif, Montreal Heart Institute). This molecule is not present in our list of 161 compounds
194 because it was not active in the CPE assays that we investigated and was cytotoxic. As such, this
195 molecule could possibly act on the exaggerated inflammatory response seen in some patients in
196 more advance stages of disease progression.
197
198 Another major group of drugs are anti-cancer agents. Many of these compounds are kinase
199 inhibitors such as Abemaciclib, Pazopanib, Ceritinib, Lapatinib and Imatinib. Imatinib, a potent
200 ABL inhibitor, was found here to have moderate CPE activity. This compound is in clinical trial
201 for COVID-19 but other authors noted that this molecule had limited activity on SARS-CoV-2
202 entry/infection in different in vitro assay types.24 It is also important to note that some kinase
203 inhibitors are used for the treatment of autoimmune disorders and other complex imbalance of the
204 immune system like for instance, Baricitinib. This compound is used for the treatment of
205 rheumatoid arthritis and is in clinical trial for treating COVID-19 patients. Some authors suggested
206 that it could be beneficial in preventing virus infectivity via perturbation of endocytosis25 and/or
207 could be important as inhibitor of targets in critically ill COVID-19 patients.26 This compound is
208 obviously not present in our list of anti-cancer agents and was not found active in the CPE assay.
209 Yet, such molecule could be of interest, for instance to act on the cytokine storm. Also, in the
210 cancer field, Pralatrexate was found able to potently inhibit SARS-CoV-2 replication with a
211 stronger inhibitory activity than Remdesivir.27 It is not present in our list as was found very
212 cytotoxic but in the in vitro assays that we analyzed. Yet, this compound could be of interest.
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214 Several drugs prescribed in the field of cardiovascular diseases were also found active in the CPE
215 assay. These include Vorapaxar (reduces the incidence of thrombotic cardiovascular events or with
9 216 peripheral arterial disease, a molecule proposed as potentially interesting for the treatment of
217 COVID-19 patients28), Carvedilol (treatment of heart failure, hypertension, a molecule also
218 suggested in the literature as potentially beneficial for COVID-19 patients via several mechanisms
219 of action29) or Nicardipine (antihypertensive properties effective in the treatment of angina and
220 coronary spasms).
221
222 The molecules that belong to the “Infectious Disease” category include molecules with widely
223 different types of activities. For instance, Mefloquine and Chloroquine (anti-parasitics for
224 Malaria), Letermovir (for prophylaxis of cytomegalovirus infection), Cenicriviroc (under clinical
225 trials for the treatment of HIV-infection/AIDS), Nitazoxanide (broad-spectrum anti-infective drug)
226 and Lopinavir (in the treatment of HIV-infection). Several antimalarial drugs (e.g., Methylene
227 blue) are known to act in vitro on SARS-CoV-230 while the in vitro activity of Cenicriviroc has
228 also been recently reported.31 In the present study however, Methylene blue was not kept in our
229 final list of 161 compounds as the molecule was reported to be cytotoxic in the NCATS COVID19
230 results. Nitazoxanide was for example found promising in its ability to hinder the replication of a
231 SARS-CoV-2 isolate32 and is now in several clinical trials either alone (e.g., see33), against
232 placebo, or in combination with for instance Ivermectin (a broad-spectrum anti-parasite
233 medication that was not found to be active in the CPE assays that we investigated here and that
234 was highly cytotoxic in Vero E6 cells counterscreen).
235
236 Molecules of the “Psychotropic drugs” category also involve structurally diverse compounds that
237 include, for instance, Clomipramine (an antidepressant, also reported in a very recent study34),
10 238 Chlorpromazine (an antipsychotic that has activity in vitro and is in clinical trial35-37), Fluoxetine
239 (an antidepressant), and Haloperidol (an antipsychotic).
240
241 From these first analysis, it was then important to cluster the small molecules based on their
242 chemistry. Many different approaches can be used for this purpose38 but as the bioactive
243 compounds investigated here tend to belong to a limited number of chemical classes, a simple way
244 is to group the compounds based on the presence of identical/similar organic functional groups.
245 We investigated our list of 161 molecules using this strategy with the DataWarrior application.
246 The results are shown in Fig. 2. As can be seen, a large cluster involves drugs used for allergies
247 and for mental disorders. These molecules all share a phenothiazine group with different types of
248 side chains (molecules around Trimeprazine also named Alimemazine or around Promazine or
249 Fluphenazine, a piperazine ring phenothiazine). Other molecules that are chemically closely
250 related involve for instance Clomipramine or Imipramine. Here, the phenothiazine group is not
251 present but a dibenzazepine group is found instead.
252 Earlier we suggested that cationic amphiphilic psychotropic and antihistamine drugs might play a
253 significant protective role as witnessed by the relatively low representation of the psychiatric
254 patients among the COVID-19 clinical units.2 The notion of CADs and/or lysosomotropic active
255 agents is not clearly defined but in general, the scientific community considers that the cationic
256 character of a molecule can be flagged by the (predicted) value of its highest basic pKa while the
257 amphiphilicity can be estimated by (computed) log P values.4,39 Such compounds contain organic
258 bases with basic pKa above 6 or 7 and are expected to carry one or more positive charges at
259 physiological pH (even more so in the acidic environment of the endosomal-lysosomal system)
260 while the computed log P value of these molecules is in general above 3. If we apply such criteria
11 261 to our list of 161 molecules, 125 compounds have a computed log P above 3 and among these, 105
262 have at least one positive charge, suggesting that about 65% of the compounds could be of CADs.
263 Obviously such global physicochemical properties are present in a variety of drugs that act in many
264 therapeutic areas. Here we found such compounds in all the five disease categories reported in Fig.
265 1.
266
267 From our analysis, the types of chemical structures or substructures that would seem interesting to
268 interfere with SARS-CoV-2 infection are illustrated in Figure 3. According to the automated
269 structural classification package ClassyFire, the main chemical classes involve molecules that
270 contain as a core a phenothiazine group (e.g., Promazine), a benzazepine group (e.g., Imipramine),
271 a benzodiazepine group (e.g., Clozapine), a dibenzocycloheptene group (e.g., Cyproheptadine), a
272 benzocycloheptapyridine group (e.g., Desloratadine), a diazanaphthalene group (e.g., Azelastine)
273 or a benzene and substituted derivative group (e.g., Homochlorcyclizine or Buclizine, in this case
274 a piperazine ring is present in the core region).
275
276 In vitro data (and for this disease, small animal models) cannot clearly predict if a molecule is
277 going to be active on SARS-CoV-2 in Human. Yet, interestingly, after mining 219,000 digital
278 health records, Reznikov et al.40, have reported that prior usage of Loratadine, Diphenhydramine,
279 Cetirizine, Hydroxyzine or Azelastine was associated with a reduced incidence of positive SARS-
280 CoV-2 test results in individuals of 61 years and above. Loratadine and Azelastine are present in
281 our list of 161 drugs. Loratadine and Azelastine were also found in other reported experimental
282 screening data available at the open NCATS portal to perturb virus entry via modulation of the
283 ACE2-Spike protein interaction (similar results in this assay were apparently not found for
12 284 Desloratadine). Diphenhydramine was not tested in the data that we downloaded from the NCATS
285 portal but the highly similar molecule Bromodiphenhydramine was found active in the CPE assay.
286 Yet, Reznikov et al. reported that Diphenhydramine was indeed active in vitro. Hydroxyzine and
287 its active metabolite Cetirizine, were not found active in the CPE assays that we analyzed nor in
288 other assays reported at the open NCATS portal but Hydroxyzine was found to impede the
289 interaction between the viral Spike protein and the human receptor ACE2 and as such could
290 interfere with virus entry (action at the level of the Spike could also be of importance for SARS-
291 CoV-2 virulence). In our hands, Hydroxyzine has only moderate in vitro activity (unpublished
292 data) but we listed it as a very interesting CAD.2 In fact, very recent and interesting clinical
293 observations suggest that Hydroxyzine could reduce mortality in patients hospitalized for COVID-
294 19 most likely in part due to anti-inflammatory properties.41 These data suggest that additional
295 investigations are needed for this compound to fully understand the molecular mechanisms at play
296 and fully assess its activity on the virus and on the host. Along the same line and with the idea of
297 drug combination, it seems possible that the use of two anti-histamine molecules, Cetirizine and
298 Famotidine (not predicted to be CAD), both found to be inactive in the analyzed CPE assays, might
299 be a safe and effective approach to reduce the severity of COVID-19, presumably via a modulation
300 of the histamine-mediated cytokine storm.42 Again, one has to be cautious with in vitro data and
301 statistics performed on electronic health records, yet, the data reported above definitively suggest
302 that some of these CAD molecules could be of interest.
303 Overall, the present analysis, together with recently reported studies by other groups, support our
304 initial observation2 and do indeed suggest that “some” psychiatric patients could have been
305 protected by their pharmacological treatments. Along this line of reasoning, it should also be
306 mentioned that these patients receive in general a cocktail of drugs (psychotropic and anti-
13 307 histamine molecules) including several CAD compounds possibly working on different molecular
308 mechanisms.
309
310 Conclusions
311 From the above analysis, we suggest that some antihistamine and psychotropic CADs could protect
312 Humans from SARS-CoV-2 infection while some of these drugs might be also beneficial at more
313 advanced stages of the disease. Not only the recent publications mentioned above but also some
314 recent reviews suggest that more and more research teams in different countries believe, based on
315 different types of data, that these molecules could have a potential (e.g., some new reviews43-46).
316 The CAD molecules analyzed here have moderate to relatively high levels of anti-viral activity at
317 nontoxic concentrations in vitro. Some of these compounds are actively investigated such as
318 Fluoxetine (e.g., treatment of depression)47 or Chlorpromazine35,48 but many others need to be
319 explored. The molecular mechanisms involved are likely to be complex, from perturbation of
320 endocytosis, membrane fusion to direct binding to some specific receptors. For example, a recent
321 investigation applied surface plasmon resonance to study some antipsychotic drugs and reported
322 that several compounds could bind directly to ACE2 and partially inhibit this virus entry
323 mechanism.49 It is of course important to note that psychotropic compounds can induce side effects
324 and might not be safe enough to be prescribed for prophylaxis to a population not concerned by
325 psychiatric issues. Yet, with regard to SARS-CoV-2 infection, psychotropic CADs could be
326 replaced by antihistamine CADs. Clinical trials are now needed to investigate the true potentials
327 of these molecules in Human, the type of patients that could benefit from these molecules and at
328 which stage of the infection the drug(s) should be given, prophylaxis being a potential option. In
329 fact, for prevention purposes, molecules that have moderate in vitro activity might be sufficient
14 330 while it is also known, that, if needed, most antihistamine CADs could be tolerated at higher doses
331 without inducing severe side effects. Most likely, drug combinations could be beneficial but here
332 also clinical trials will be needed to evaluate potential additivity, synergy or antagonism. Further,
333 these compounds, if active in Human, may help facing the emergence of potentially devastating
334 variants while new vaccines are developed.
335 336 337 338 Contributors 339 BV planed, generated, analyzed the chemical data and wrote a first draft of the manuscript. ML 340 provided clinical observations. BV, RK and PB optimized the initial draft; a final version was 341 produced by all authors. 342 343 344 Declaration of Competing Interest 345 The authors declare that they have no competing financial interests or personal relationships that 346 could influence the work reported in this paper.
347 Acknowledgements 348 We thank the foundation FondaMental for supports.
349 350 351 352 Figure legend 353 Fig. 1: Five major drug indications found to have SARS-CoV-2 cytopathic effect 354 355 356 Fig. 2: Bioactive compounds (161 molecules) clustered according to the presence of organic 357 functional groups. The molecules that were found to share identical or similar organic functions 358 are connected by lines (eg., the presence of a specific ring system). Increased transparency of the 359 lines reflects decreasing similarity. The compounds are marked either as a circle (molecules not 360 toxic in human fibroblast toxicity assay) or as a square (molecules not tested for such toxicity). 361 The marker symbols and the connecting lines are color coded according to the reported 362 experimental potency values (for this dataset, AC50 values are provided). The background 363 colors behind the markers and lines are color coded according to the disease categories. Yet, as 364 some compounds in the category of “Allergies” are also prescribed in psychiatric settings 365 (indeed some psychotropic drugs were initially used as antihistaminics), we applied the same 366 background color for these two categories to facilitate the reading of this figure. We can observe 367 in this figure a large group of compounds sharing similar substructures (e.g., around
15 368 Promethazine) that have in general moderate activity in these in vitro assays.
369 370 Fig. 3: The types of chemistry that could interfere with the SARS-CoV-2 life cycle in vitro following 371 our clinical, the experimental high throughput data and chemoinformatics analysis. The largest 372 family of molecules contain a phenothiazine group (16 molecules have such a group). 373 374 375 References 376 377 1. Edwards A. What Are the Odds of Finding a COVID-19 Drug from a Lab Repurposing 378 Screen? Journal of chemical information and modeling. 2020. 379 2. Villoutreix BO, Beaune PH, Tamouza R, Krishnamoorthy R, Leboyer M. Prevention of 380 COVID-19 by drug repurposing: rationale from drugs prescribed for mental disorders. 381 Drug discovery today. 2020;25(8):1287-1290. 382 3. Ekins S, Mottin M, Ramos P, et al. Déjà vu: Stimulating open drug discovery for SARS- 383 CoV-2. Drug discovery today. 2020;25(5):928-941. 384 4. Blaess M, Kaiser L, Sauer M, Csuk R, Deigner HP. COVID-19/SARS-CoV-2 Infection: 385 Lysosomes and Lysosomotropism Implicate New Treatment Strategies and Personal Risks. 386 International journal of molecular sciences. 2020;21(14). 387 5. Salata C, Calistri A, Parolin C, Baritussio A, Palù G. Antiviral activity of cationic 388 amphiphilic drugs. Expert review of anti-infective therapy. 2017;15(5):483-492. 389 6. Breiden B, Sandhoff K. Emerging mechanisms of drug-induced phospholipidosis. 390 Biological chemistry. 2019;401(1):31-46. 391 7. Ballout RA, Sviridov D, Bukrinsky MI, Remaley AT. The lysosome: A potential juncture 392 between SARS-CoV-2 infectivity and Niemann-Pick disease type C, with therapeutic 393 implications. FASEB journal : official publication of the Federation of American Societies 394 for Experimental Biology. 2020;34(6):7253-7264. 395 8. Shang J, Wan Y, Luo C, et al. Cell entry mechanisms of SARS-CoV-2. Proceedings of the 396 National Academy of Sciences of the United States of America. 2020;117(21):11727- 397 11734. 398 9. Gordon DE, Jang GM, Bouhaddou M, et al. A SARS-CoV-2 protein interaction map 399 reveals targets for drug repurposing. Nature. 2020;583(7816):459-468. 400 10. Eldanasory OA, Eljaaly K, Memish ZA, Al-Tawfiq JA. Histamine release theory and roles 401 of antihistamine in the treatment of cytokines storm of COVID-19. Travel medicine and 402 infectious disease. 2020;37:101874. 403 11. Xu J, Xue Y, Zhou R, Shi PY, Li H, Zhou J. Drug repurposing approach to combating 404 coronavirus: Potential drugs and drug targets. Medicinal research reviews. 2020. 405 12. Kim S, Chen J, Cheng T, et al. PubChem in 2021: new data content and improved web 406 interfaces. Nucleic acids research. 2020. 407 13. Mendez D, Gaulton A, Bento AP, et al. ChEMBL: towards direct deposition of bioassay 408 data. Nucleic acids research. 2019;47(D1):D930-d940. 409 14. Wishart DS, Feunang YD, Guo AC, et al. DrugBank 5.0: a major update to the DrugBank 410 database for 2018. Nucleic acids research. 2018;46(D1):D1074-d1082. 411 15. Avram S, Bologa CG, Holmes J, et al. DrugCentral 2021 supports drug discovery and 412 repositioning. Nucleic acids research. 2020.
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