Medicine in Omics
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Use of Omics Data in Fracture Prediction; a Scoping and Systematic Review in Horses and Humans
animals Review Use of Omics Data in Fracture Prediction; a Scoping and Systematic Review in Horses and Humans Seungmee Lee 1,*, Melissa E. Baker 1, Michael Clinton 2 and Sarah E. Taylor 1 1 The Dick Vet Equine Hospital, The Roslin Institute, Easter Bush, Roslin, Midlothian EH25 9RG, UK; [email protected] (M.E.B.); [email protected] (S.E.T.) 2 The RICE Group, Division of Gene Function and Development, The Roslin Institute, Easter Bush, Roslin, Midlothian EH25 9RG, UK; [email protected] * Correspondence: [email protected] Simple Summary: Despite many recent advances in imaging and epidemiological data analysis, musculoskeletal injuries continue to be a welfare issue in racehorses. Omics studies describe the study of protein, genetic material (both DNA and RNA, including microRNAs—small non-coding ribonucleic acids) and metabolites that may provide insights into the pathophysiology of disease or opportunities to monitor response to treatment when measured in bodily fluids. As these fields of study are scientifically complex and highly specialised, it is timely to perform a review of the current literature to allow for the design of robust studies that allow for repeatable work. Systematic reviews have been introduced into the medical literature and are a methodological way of searching for relevant papers followed by critical review of the content and a detection of biases. The objectives of the current systematic review were to identify and critically appraise the literature pertaining to microRNA (miRNA) and their target genes that are correlated with stress fractures in racehorses and humans. -
A Comprehensive Analysis of the Usability and Archival Stability of Omics Computational
bioRxiv preprint doi: https://doi.org/10.1101/452532; this version posted October 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: A comprehensive analysis of the usability and archival stability of omics computational tools and resources 1,2$# 2$ 1 1 3 1 Serghei Mangul , Thiago Mosqueiro , Dat Duong , Keith Mitchell ,Varuni Sarwal , Brian Hill , 4 1 1 1 7 Jaqueline Brito , Russell Jared Littman , Benjamin Statz , Angela Ka-Mei Lam , Gargi Dayama , 7 2 5 1,6 7,8 Laura Grieneisen , Lana S. Martin , Jonathan Flint , Eleazar Eskin , Ran Blekhman 1 Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA 2 Institute for Quantitative and Computational Biosciences, University of California Los Angeles, 611 Charles E. Young Drive East, Los Angeles, CA 90095, USA 3 Indian Institute of Technology Delhi, Hauz Khas, New Delhi, Delhi 110016, India 4 Institute of Mathematics and Computer Science, University of São Paulo, São Paulo, Brazil 5 Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, 760 Westwood Plaza, Los Angeles, CA 90095, USA 6 Department of Human Genetics, University of California Los Angeles, 695 Charles E. Young Drive South, Los Angeles, CA 90095, USA 7 Department of Genetics, Cell Biology and Development, University of Minnesota, 321 Church St SE, Minneapolis, MN 55455, USA 8 Department of Ecology, Evolution, and Behavior, University of Minnesota, 100 Ecology Building, 1987 Upper Buford Cir, Falcon Heights, MN 55108, USA $ - These authors contributed equally to the paper # - Corresponding author 1 bioRxiv preprint doi: https://doi.org/10.1101/452532; this version posted October 25, 2018. -
SCIENCE CITATION INDEX EXPANDED - JOURNAL LIST Total Journals: 8631
SCIENCE CITATION INDEX EXPANDED - JOURNAL LIST Total journals: 8631 1. 4OR-A QUARTERLY JOURNAL OF OPERATIONS RESEARCH 2. AAPG BULLETIN 3. AAPS JOURNAL 4. AAPS PHARMSCITECH 5. AATCC REVIEW 6. ABDOMINAL IMAGING 7. ABHANDLUNGEN AUS DEM MATHEMATISCHEN SEMINAR DER UNIVERSITAT HAMBURG 8. ABSTRACT AND APPLIED ANALYSIS 9. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 10. ACADEMIC EMERGENCY MEDICINE 11. ACADEMIC MEDICINE 12. ACADEMIC PEDIATRICS 13. ACADEMIC RADIOLOGY 14. ACCOUNTABILITY IN RESEARCH-POLICIES AND QUALITY ASSURANCE 15. ACCOUNTS OF CHEMICAL RESEARCH 16. ACCREDITATION AND QUALITY ASSURANCE 17. ACI MATERIALS JOURNAL 18. ACI STRUCTURAL JOURNAL 19. ACM COMPUTING SURVEYS 20. ACM JOURNAL ON EMERGING TECHNOLOGIES IN COMPUTING SYSTEMS 21. ACM SIGCOMM COMPUTER COMMUNICATION REVIEW 22. ACM SIGPLAN NOTICES 23. ACM TRANSACTIONS ON ALGORITHMS 24. ACM TRANSACTIONS ON APPLIED PERCEPTION 25. ACM TRANSACTIONS ON ARCHITECTURE AND CODE OPTIMIZATION 26. ACM TRANSACTIONS ON AUTONOMOUS AND ADAPTIVE SYSTEMS 27. ACM TRANSACTIONS ON COMPUTATIONAL LOGIC 28. ACM TRANSACTIONS ON COMPUTER SYSTEMS 29. ACM TRANSACTIONS ON COMPUTER-HUMAN INTERACTION 30. ACM TRANSACTIONS ON DATABASE SYSTEMS 31. ACM TRANSACTIONS ON DESIGN AUTOMATION OF ELECTRONIC SYSTEMS 32. ACM TRANSACTIONS ON EMBEDDED COMPUTING SYSTEMS 33. ACM TRANSACTIONS ON GRAPHICS 34. ACM TRANSACTIONS ON INFORMATION AND SYSTEM SECURITY 35. ACM TRANSACTIONS ON INFORMATION SYSTEMS 36. ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY 37. ACM TRANSACTIONS ON INTERNET TECHNOLOGY 38. ACM TRANSACTIONS ON KNOWLEDGE DISCOVERY FROM DATA 39. ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE 40. ACM TRANSACTIONS ON MODELING AND COMPUTER SIMULATION 41. ACM TRANSACTIONS ON MULTIMEDIA COMPUTING COMMUNICATIONS AND APPLICATIONS 42. ACM TRANSACTIONS ON PROGRAMMING LANGUAGES AND SYSTEMS 43. ACM TRANSACTIONS ON RECONFIGURABLE TECHNOLOGY AND SYSTEMS 44. -
Statistical Integration of 'Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intesti
H OH metabolites OH Article Statistical Integration of ‘Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intestinal Exposure to the Mycotoxin Deoxynivalenol Marie Tremblay-Franco 1,2,*, Cécile Canlet 1,2, Philippe Pinton 1, Yannick Lippi 1, Roselyne Gautier 1,2, Claire Naylies 1, Manon Neves 1, Isabelle P. Oswald 1 , Laurent Debrauwer 1,2 and Imourana Alassane-Kpembi 3 1 Toxalim (Research Center in Food Toxicology), Toulouse University, INRAE, ENVT, INP-Purpan, UPS, 31027 Toulouse, France; [email protected] (C.C.); [email protected] (P.P.); [email protected] (Y.L.); [email protected] (R.G.); [email protected] (C.N.); [email protected] (M.N.); [email protected] (I.P.O.); [email protected] (L.D.) 2 Metatoul-AXIOM Platform, MetaboHUB, Toxalim, INRAE, 31027 Toulouse, France 3 Department of Veterinary Biomedicine, Faculty of Veterinary Medicine, Université de Montréal, Saint-Hyacinthe, QC J2S 2M2, Canada; [email protected] * Correspondence: [email protected] Abstract: The effects of low doses of toxicants are often subtle and information extracted from metabolomic data alone may not always be sufficient. As end products of enzymatic reactions, metabolites represent the final phenotypic expression of an organism and can also reflect gene expres- Citation: Tremblay-Franco, M.; sion changes caused by this exposure. Therefore, the integration of metabolomic and transcriptomic Canlet, C.; Pinton, P.; Lippi, Y.; data could improve the extracted biological knowledge on these toxicants induced disruptions. In Gautier, R.; Naylies, C.; Neves, M.; the present study, we applied statistical integration tools to metabolomic and transcriptomic data Oswald, I.P.; Debrauwer, L.; obtained from jejunal explants of pigs exposed to the food contaminant, deoxynivalenol (DON). -
Discovering and Linking Public Omics Data Sets Using the Omics Discovery Index
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Providence St. Joseph Health Digital Commons Providence St. Joseph Health Providence St. Joseph Health Digital Commons Articles, Abstracts, and Reports 5-9-2017 Discovering and linking public omics data sets using the Omics Discovery Index. Yasset Perez-Riverol Mingze Bai Felipe da Veiga Leprevost Silvano Squizzato Young Mi Park See next page for additional authors Follow this and additional works at: https://digitalcommons.psjhealth.org/publications Part of the Genetics and Genomics Commons Recommended Citation Perez-Riverol, Yasset; Bai, Mingze; da Veiga Leprevost, Felipe; Squizzato, Silvano; Park, Young Mi; Haug, Kenneth; Carroll, Adam J; Spalding, Dylan; Paschall, Justin; Wang, Mingxun; Del-Toro, Noemi; Ternent, Tobias; Zhang, Peng; Buso, Nicola; Bandeira, Nuno; Deutsch, Eric W; Campbell, David S; Beavis, Ronald C; Salek, Reza M; Sarkans, Ugis; Petryszak, Robert; Keays, Maria; Fahy, Eoin; Sud, Manish; Subramaniam, Shankar; Barbera, Ariana; Jiménez, Rafael C; Nesvizhskii, Alexey I; Sansone, Susanna-Assunta; Steinbeck, Christoph; Lopez, Rodrigo; Vizcaíno, Juan A; Ping, Peipei; and Hermjakob, Henning, "Discovering and linking public omics data sets using the Omics Discovery Index." (2017). Articles, Abstracts, and Reports. 1511. https://digitalcommons.psjhealth.org/publications/1511 This Article is brought to you for free and open access by Providence St. Joseph Health Digital Commons. It has been accepted for inclusion in Articles, Abstracts, -
Ecological Genetics and Genomics
ECOLOGICAL GENETICS AND GENOMICS AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Editorial Board p.1 • Guide for Authors p.2 ISSN: 2405-9854 DESCRIPTION . Ecological Genetics and Genomics publishes ecological studies of broad interest that provide significant insight into ecological interactions or/ and species diversification. New data in these areas are published as research papers, or methods and resource reports that provide novel information on technologies or tools that will be of interest to a broad readership. Complete data sets are shared where appropriate. The journal also provides Reviews, and Perspectives articles, which present commentary on the latest advances published both here and elsewhere, placing such progress in its broader biological context. Topics include: metagenomics population genetics/genomics evolutionary ecology conservation and molecular adaptation speciation genetics environmental and marine genomics ecological simulation genomic divergence of organisms EDITORIAL BOARD . co-Editors-in-Chief T. Gojobori, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia G. Bernardi, Roma Tre University, Roma, Italy Editor T.-Y. Chiang, National Cheng Kung University, Tainan, Taiwan AUTHOR INFORMATION PACK 28 Sep 2021 www.elsevier.com/locate/egg 1 GUIDE FOR AUTHORS . Aims and Scope Ecological Genetics and Genomics publishes ecological studies of broad interest that provide significant insight into ecological interactions or/ and species diversification. New data in these areas are published as research papers, or methods and resource reports that provide novel information on technologies or tools that will be of interest to a broad readership. Complete data sets are shared where appropriate. The journal also provides Reviews, and Perspectives articles, which present commentary on the latest advances published both here and elsewhere, placing such progress in its broader biological context. -
Predatory Publishing – Firm Action Is Required List of Fake Conference in Order to Help Researchers Avoid Falling Into the Trap of Predatory Conferences
Science of the Total Environment 734 (2020) 139329 Contents lists available at ScienceDirect Science of the Total Environment journal homepage: www.elsevier.com/locate/scitotenv Predatory publishing – Firm action is required list of fake conference in order to help researchers avoid falling into the trap of predatory conferences. Another issue is the fact that the OMICS Publishing Group claims that Keywords: some of its journals are indexed by databases such as Scopus. Again, a Publons simple check using the Scopus Preview Website (www.scopus.com/ Predatory publishers sources?zone=&origin=NO%20ORIGIN%20DEFINED), which is avail- Scopus fi Open access able free of charge on the internet, con rmed that only 15 journals have been at some point listed in this global abstract and citation data- base (Table 1). In fact, no journals from this publisher have been indexed by Scopus since 2015. The internet has revolutionized all kinds of industries, but it has also A recent study has shown the adverse effect of misleading informa- created opportunities for unscrupulous organizations to take advantage tion. In a seminal piece of work, Moher et al. (2017) determined that of them. Predatory publishing companies have done so through an 1907 articles published by more than 200 supposedly predatory open-access model, sowing confusion through misleading information, journals contained data on roughly 2 million individuals and over lack of transparency, indiscriminate solicitation and deviation from best 8000 animals. Since the quality of the peer-review process of predatory editorial and publication practices (Grudniewicz et al., 2019; Sonne journals is questionable, the validity of this huge amount of data be- et al., 2020a). -
Alleged Predatory Publisher Buys Medical Journals
News CMAJ Alleged predatory publisher buys medical journals ne of the world’s most well- known “predatory” publishers O has bought two commercial Canadian publishers of about 16 medi- cal specialty journals. But one former owner says during the purchasing negotiations, the new publisher agreed not use predatory practices. The journals were previously pub- lished by Pulsus Group in Oakville, Ontario, and Andrew John Publishing in Dundas, Ontario. As of September 28, the journals appear on the Pulsus Group website, which gives an address in Lon- don, UK, where Pulsus Group UK was registered in August 2016. It is a subsid- Pulsus Group iary of OMICS International of Hyder- Pulsus journals are now owned by a newly created subsidiary of OMICS International, abad, India, which is facing charges from an alleged predatory publisher based in Hyderabad, India. the US Federal Trade Commission (FTC) for “deceiving academics and researchers OMICS. Brockington learned this during nals’ impact factors and listing in Scopus about the nature of its publications and a conference call with the new publisher and PubMed, in order to look legitimate, hiding publication fees ranging from hun- when she asked who now owned Pulsus he adds. dreds to thousands of dollars,” according Group. When she contacted editors of Beall says OMICS’ main practice is to an FTC statement. other Pulsus journals, they were unaware to “hold papers hostage.” Authors sub- Prior to this latest sale, back in that the new publisher was OMICS. mit papers in response to spam emails December 2015, Pulsus sold four jour- When Robert Kalina decided to looking for submissions. -
Cancer Genomics & Proteomics
CANCER GENOMICS & PROTEOMICS Volume 14 , Number 3, May-June 2017 ISSN (online): 1790-6245 Published by the International Institute of Anticancer Research Editorial Policy. CANCER GENOMICS & PROTEOMICS (CGP) welcomes the submission of high quality original articles CANCER and reviews on all aspects of the application of genomic and proteomic technolog ies to experimental and clinical cancer research. The Journal’s scientific spectrum includes: (a) molecular causes of carcinogenesis, cancer progression and metastasis; (b) GENOMICS & structural and functional aspects of genes in the cancer cell; (c) advances in genomic and proteomic technologies applicable to cancer research; (d) anticancer drug design and drug development. PROTEOMICS CGP will also accept abstracts and proceedings of scientific Online ISSN: 1790-6245 meetings for publication, following consideration and approval by the Editorial Board. Editor-in-Chief: A main aim of CGP is to ensure the prompt and confidential ARUN SETH, Sunnybrook Research Institute, University of Toronto, review, and rapid publication of original works and reviews, Toronto, O N, Canada generally within 1-2 months from acceptance. Managing Editor: For more information about CANCER GENOMICS & G.J . DELINASIOS, International Institute of Anticancer Research PROTEOMICS, IIAR and the Conferences, please visit the (IIAR) , Kapandriti, At tiki , Greece IIAR website: www.iiar-anticancer.org Managing Editor (2004-2016): Publication Data: CANCER GENOMICS & PROTEOMICS J.G . DELINASIOS, International Institute of Anticancer Research (CGP) is published bimonthly online-only and open access by the (IIAR) , Kapandriti, At tiki , Greece International Institute of Anticancer Research. Each annual volume comprises of six issues. Annual Author and Subject Editorial Board Indexes are included in the sixth issue of each volume. -
Get App Journal Flyer
IMPACT Indexed in: FACTOR PubMed 4.096 genes an Open Access Journal by MDPI Academic Open Access Publishing since 1996 IMPACT Indexed in: FACTOR PubMed genes 4.096 an Open Access Journal by MDPI Editor-in-Chief Message from the Editor-in-Chief Prof. Dr. J. Peter W. Young Genes are central to our understanding of biology, and modern advances such as genomics and genome editing have maintained genetics as a vibrant, diverse and fast- moving field. There is a need for good quality, open access journals in this area, and the Genes team aims to provide expert manuscript handling, serious peer review, and rapid publication across the whole discipline of genetics. Starting in 2010, the journal is now well established and recognised. Why not consider Genes for your next genetics paper? Author Benefits Open Access Unlimited and free access for readers No Copyright Constraints Retain copyright of your work and free use of your article Impact Factor 4.096 (2020 Journal Citation Reports®) High Visibility SCIE-Science Citation Index Expanded (Clarivate Analytics), MEDLINE (NLM), PubMed (NLM), Scopus (Elsevier) Rapid Publication Manuscripts are peer-reviewed and a first decision provided to authors approximately 17.4 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the first half of 2021) Discounts on Article Processing Charges (APC) If you belong to an institute that participates with the MDPI Institutional Open Access Program No Space Constraints, No Extra Space or Color Charges No restriction on the length of the papers, number of figures or colors Aims and Scope Genes (ISSN 2073-4425) is an international, peer-reviewed, open access journal which provides an advanced forum for studies on all aspects of genetics and genomics from the molecular to the population level. -
Omics” Approach from Metabolomics to Advanced Omics for Development of Immune Checkpoint Inhibitors: Potential Strategies for Next Generation of Cancer Immunotherapy
International Journal of Molecular Sciences Review The Comprehensive “Omics” Approach from Metabolomics to Advanced Omics for Development of Immune Checkpoint Inhibitors: Potential Strategies for Next Generation of Cancer Immunotherapy Sang Jun Yoon, Chae Bin Lee, Soon Uk Chae, Seong Jun Jo and Soo Kyung Bae * College of Pharmacy and Integrated Research Institute of Pharmaceutical Sciences, The Catholic University of Korea, 43 Jibong-ro, Wonmi-gu, Bucheon 14662, Korea; [email protected] (S.J.Y.); [email protected] (C.B.L.); [email protected] (S.U.C.); [email protected] (S.J.J.) * Correspondence: [email protected]; Tel.: +82-2-2164-4054 Abstract: In the past decade, immunotherapies have been emerging as an effective way to treat cancer. Among several categories of immunotherapies, immune checkpoint inhibitors (ICIs) are the most well-known and widely used options for cancer treatment. Although several studies continue, this treatment option has yet to be developed into a precise application in the clinical setting. Recently, omics as a high-throughput technique for understanding the genome, transcriptome, proteome, and metabolome has revolutionized medical research and led to integrative interpretation to advance our Citation: Yoon, S.J.; Lee, C.B.; Chae, understanding of biological systems. Advanced omics techniques, such as multi-omics, single-cell S.U.; Jo, S.J.; Bae, S.K. The Comprehensive “Omics” Approach omics, and typical omics approaches, have been adopted to investigate various cancer immunothera- from Metabolomics to Advanced pies. In this review, we highlight metabolomic studies regarding the development of ICIs involved Omics for Development of Immune in the discovery of targets or mechanisms of action and assessment of clinical outcomes, including Checkpoint Inhibitors: Potential drug response and resistance and propose biomarkers. -
COMPARATIVE BIOCHEMISTRY and PHYSIOLOGY - PART D: GENOMICS and PROTEOMICS an International Journal
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY - PART D: GENOMICS AND PROTEOMICS An International Journal AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Impact Factor p.2 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.7 ISSN: 1744-117X DESCRIPTION . Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology. Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.All four CBP journals support and follow the editorial direction from all the major societies in the field: Australia & New Zealand Society of Comparative Physiology and Biochemistry (ANZSCPB) American Physiological Society (APS) Canadian Society of Zoologists (CSZ) Deutsche Zoologische Gesellschaft (DZG) European Society of Comparative Physiology and Biochemistry (ESCPB) Japanese Society for Comparative Physiology and Biochemistry (JSCPB) South American Society for Comparative Physiology and Biochemistry (SASCPB) Societe de Physiologie (SDP) Society for Experimental Biology (SEB) Society for Integrative & Comparative Biology (SICB) Benefits to authors CBP journals are focused on promoting the authors and the work published in the journal: All articles are carefully evaluated directly by the Editors-in-Chief who are leading experts in their field. Availability: contact the Editor-in-Chief via the Editorial Board page for any questions you may have.