Untangling the Chemical Complexity of Carbon Monoxide
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Role of Norrish Type-I Chemistry in Photoactive Drugs: an Ab Initio Study of a Cyclopropenone-Enediyne Drug Precursor
Leger, S. J., Marchetti, B., Ashfold, M. N. R., & Karsili, T. N. V. (2020). The Role of Norrish Type-I Chemistry in Photoactive Drugs: An ab initio Study of a Cyclopropenone-Enediyne Drug Precursor. Frontiers in Chemistry, 8, [596590]. https://doi.org/10.3389/fchem.2020.596590 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.3389/fchem.2020.596590 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Fromtiers Media at https://doi.org/10.3389/fchem.2020.596590. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ ORIGINAL RESEARCH published: 22 December 2020 doi: 10.3389/fchem.2020.596590 The Role of Norrish Type-I Chemistry in Photoactive Drugs: An ab initio Study of a Cyclopropenone-Enediyne Drug Precursor Spencer J. Léger 1,2, Barbara Marchetti 1, Michael N. R. Ashfold 3 and Tolga N. V. Karsili 1* 1 Department of Chemistry, University of Louisiana at Lafayette, Lafayette, LA, United States, 2 Department of Chemical Engineering, University of Louisiana at Lafayette, Lafayette, LA, United States, 3 School of Chemistry, University of Bristol, Bristol, United Kingdom We present a contemporary mechanistic description of the light-driven conversion of cyclopropenone containing enediyne (CPE) precusors to ring-opened species amenable to further Bergman cyclization and formation of stable biradical species that have been proposed for use in light-induced cancer treatment. -
Interstellar Ices and Radiation-Induced Oxidations of Alcohols
The Astrophysical Journal, 857:89 (8pp), 2018 April 20 https://doi.org/10.3847/1538-4357/aab708 © 2018. The American Astronomical Society. All rights reserved. Interstellar Ices and Radiation-induced Oxidations of Alcohols R. L. Hudson and M. H. Moore Astrochemistry Laboratory, NASA Goddard Space Flight Center, Greenbelt, Maryland, 20771, USA; [email protected] Received 2017 May 2; revised 2018 March 8; accepted 2018 March 9; published 2018 April 18 Abstract Infrared spectra of ices containing alcohols that are known or potential interstellar molecules are examined before and after irradiation with 1 MeV protons at ∼20 K. The low-temperature oxidation (hydrogen loss) of six alcohols is followed, and conclusions are drawn based on the results. The formation of reaction products is discussed in terms of the literature on the radiation chemistry of alcohols and a systematic variation in their structures. The results from these new laboratory measurements are then applied to a recent study of propargyl alcohol. Connections are drawn between known interstellar molecules, and several new reaction products in interstellar ices are predicted. Key words: astrochemistry – infrared: ISM – ISM: molecules – molecular data – molecular processes 1. Introduction 668 cm−1 was produced in solid propargyl alcohol’sIR spectrum after the compound was irradiated with 2 keV Interstellar ices are now recognized as an important comp- electrons (Sivaraman et al. 2015, hereafter SMSB from the onent of the interstellar medium (ISM). The results of multiple coauthors final initials). That IR peak was assigned to benzene infrared (IR) surveys have led to over a dozen assignments of (C H ), which was said “to be the major product from spectral features to molecular ices, with the more abundant 6 6 propargyl alcohol irradiation.” However, a full mid-IR interstellar ices being H O, CO, and CO (Boogert et al. -
Accurate Enthalpies of Formation of Astromolecules: Energy, Stability and Abundance
Accurate Enthalpies of Formation of Astromolecules: Energy, Stability and Abundance Emmanuel E. Etim and Elangannan Arunan* Inorganic and Physical Chemistry Department, Indian Institute of Science Bangalore, India-560012 *email: [email protected] ABSTRACT: Accurate enthalpies of formation are reported for known and potential astromolecules using high level ab initio quantum chemical calculations. A total of 130 molecules comprising of 31 isomeric groups and 24 cyanide/isocyanide pairs with atoms ranging from 3 to 12 have been considered. The results show an interesting, surprisingly not well explored, relationship between energy, stability and abundance (ESA) existing among these molecules. Among the isomeric species, isomers with lower enthalpies of formation are more easily observed in the interstellar medium compared to their counterparts with higher enthalpies of formation. Available data in literature confirm the high abundance of the most stable isomer over other isomers in the different groups considered. Potential for interstellar hydrogen bonding accounts for the few exceptions observed. Thus, in general, it suffices to say that the interstellar abundances of related species are directly proportional to their stabilities. The immediate consequences of this relationship in addressing some of the whys and wherefores among astromolecules and in predicting some possible candidates for future astronomical observations are discussed. Our comprehensive results on 130 molecules indicate that the available experimental enthalpy -
Exhaustive Product Analysis of Three Benzene Discharges by Microwave Spectroscopy Michael C
pubs.acs.org/JPCA Article Exhaustive Product Analysis of Three Benzene Discharges by Microwave Spectroscopy Michael C. McCarthy,* Kin Long Kelvin Lee, P. Brandon Carroll, Jessica P. Porterfield, P. Bryan Changala, James H. Thorpe, and John F. Stanton Cite This: J. Phys. Chem. A 2020, 124, 5170−5181 Read Online ACCESS Metrics & More Article Recommendations *sı Supporting Information ABSTRACT: Using chirped and cavity microwave spectroscopies, automated double resonance, new high-speed fitting and deep learning algorithms, and large databases of computed structures, the discharge products of benzene alone, or in combination with molecular oxygen or nitrogen, have been exhaustively characterized between 6.5 and 26 GHz. In total, more than 3300 spectral features were observed; 89% of these, accounting for 97% of the total intensity, have now been assigned to 152 distinct chemical species and 60 of their variants (i.e., isotopic species and vibrationally excited states). Roughly 50 of the products are entirely new or poorly characterized at high resolution, including many heavier by mass than the precursor benzene. These findings provide direct evidence for a rich architecture of two- and three-dimensional carbon and indicate that benzene growth, particularly the formation of ring−chain molecules, occurs facilely under our experimental conditions. The present analysis also illustrates the utility of microwave spectroscopy as a precision tool for complex mixture analysis, irrespective of whether the rotational spectrum of a product species is known a priori or not. From this large quantity of data, for example, it is possible to determine with confidence the relative abundances of different product masses, but more importantly the relative abundances of different isomers with the same mass. -
One-Step Synthesis of Pyridines and Dihydro- Pyridines in a Continuous Flow Microwave Reactor
One-step synthesis of pyridines and dihydro- pyridines in a continuous flow microwave reactor Mark C. Bagley*1, Vincenzo Fusillo2, Robert L. Jenkins2, M. Caterina Lubinu2 and Christopher Mason3 Full Research Paper Open Access Address: Beilstein J. Org. Chem. 2013, 9, 1957–1968. 1Department of Chemistry, School of Life Sciences, University of doi:10.3762/bjoc.9.232 Sussex, Falmer, Brighton, East Sussex, BN1 9QJ, UK, 2School of Chemistry, Main Building, Cardiff University, Park Place, Cardiff, Received: 05 July 2013 CF10 3AT, UK and 3CEM Microwave Technology Ltd, 2 Middle Slade, Accepted: 11 September 2013 Buckingham, MK18 1WA, UK Published: 30 September 2013 Email: This article is part of the Thematic Series "Chemistry in flow systems III". Mark C. Bagley* - [email protected] Guest Editor: A. Kirschning * Corresponding author © 2013 Bagley et al; licensee Beilstein-Institut. Keywords: License and terms: see end of document. Bohlmann–Rahtz; continuous flow processing; ethynyl ketones; flow chemistry; Hantzsch dihydropyridine synthesis; heterocycles; microwave synthesis; multicomponent reactions; pyridine synthesis Abstract The Bohlmann–Rahtz pyridine synthesis and the Hantzsch dihydropyridine synthesis can be carried out in a microwave flow reactor or using a conductive heating flow platform for the continuous processing of material. In the Bohlmann–Rahtz reaction, the use of a Brønsted acid catalyst allows Michael addition and cyclodehydration to be carried out in a single step without isolation of intermediates to give the corresponding trisubstituted pyridine as a single regioisomer in good yield. Furthermore, 3-substituted propargyl aldehydes undergo Hantzsch dihydropyridine synthesis in preference to Bohlmann–Rahtz reaction in a very high yielding process that is readily transferred to continuous flow processing. -
Possible Gas-Phase Syntheses for Seven Neutral Molecules Studied Recently with the Green Bank Telescope
A&A 474, 521–527 (2007) Astronomy DOI: 10.1051/0004-6361:20078246 & c ESO 2007 Astrophysics Possible gas-phase syntheses for seven neutral molecules studied recently with the Green Bank Telescope D. Quan1 and E. Herbst2 1 Chemical Physics Program, The Ohio State University, Columbus, Ohio 43210, USA e-mail: [email protected] 2 Departments of Physics, Chemistry and Astronomy, The Ohio State University, Columbus, OH 43210, USA Received 9 July 2007 / Accepted 17 August 2007 ABSTRACT Aims. With the Green Bank telescope (GBT), seven neutral molecules have been newly detected or confirmed towards either the cold interstellar core TMC-1 or the hot core source Sgr B2(N) within the last 1–2 years. Towards TMC-1, the new molecules seen are cyanoallene (CH2CCHCN) and methyl triacetylene (CH3C6H) while methyl cyanoacetylene (CH3CCCN) and methyl cyanodiacety- lene (CH3C5N) were confirmed. Towards Sgr B2(N), the three newly detected molecules are cyclopropenone (c-C3H2O), ketenimine (CH2CNH), and acetamide (CH3CONH2); these are mainly seen in absorption and are primarily located in an envelope around the hot core. In this work, we report a detailed study of the gas-phase chemistry of all seven molecules. Methods. Starting with our updated gas-phase chemical reaction network osu.01.2007, we added formation and depletion reactions to treat the chemistry of each of the seven molecules. Some of these were already in our network but with incomplete chemistry, while most were not in the network at all prior to this work. We assumed the standard physical conditions for TMC-1 and assumed that these also hold for the envelope around Sgr B2(N). -
The Interactions and Reactions of Atoms and Molecules on the Surfaces of Model Interstellar Dust Grains
The Interactions and Reactions of Atoms and Molecules on the Surfaces of Model Interstellar Dust Grains A thesis submitted for the degree of Doctor of Philosophy Helen Jessica Kimber Department of Chemistry University College London 2016 -I, Helen Jessica Kimber, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Signed, i Abstract The elemental composition of the known universe comprises almost exclusively light atoms (~99.9% hydrogen and helium). However, to date, close to 200 different molecules have been detected in the interstellar medium (ISM) where their distribution is far from uniform. The vast majority of these molecules are contained within vast clouds of gas and dust referred to as interstellar clouds. Within these interstellar clouds, many of the molecules present are formed via gas-phase ion-neutral reactions. However, there are several molecules for which known gas-phase kinetics cannot account for observed gas-phase abundances. As a result, reactions occurring on the surface of interstellar dust grains are invoked to account for the observed abundances of some of these molecules. This thesis presents results of experimental investigations into the interaction and reactions of atoms and molecules on the surface of model interstellar dust grains. Chapters three and four present results for the reaction of (3P)O on molecular ices. Specifically, the reaction of (3P)O and propyne or acrylonitrile. After a one hour dosing period, temperature programmed desorption (TPD), coupled with time-of-flight mass spectrometry (TOFMS), are used to identify (3P)O addition products. -
Simple Models for the Quick Estimation of Ground State Hydrogen Tunneling Splittings in Alcohols Cite This: Phys
PCCP View Article Online PAPER View Journal | View Issue Simple models for the quick estimation of ground state hydrogen tunneling splittings in alcohols Cite this: Phys. Chem. Chem. Phys., 2021, 23, 17591 and other compounds† Robert Medel Models for the quick estimation of energy splittings caused by coherent tunneling of hydrogen atoms are evaluated with available experimental data for alcohols and improvements are proposed. The discussed models are mathematically simple and require only results from routine quantum chemical computations, i.e. hybrid DFT calculation of the equilibrium geometry and the transition state within the harmonic approximation. A benchmark of experimental splittings spanning four orders of magnitude for 27 alcohol species is captured by three evaluated models with a mean symmetric deviation factor of 1.7, 1.5 and 1.4, respectively, i.e. the calculated values deviate on average by this factor in either direction. Limitations of the models are explored with alcohols featuring uncommon Creative Commons Attribution 3.0 Unported Licence. properties, such as an inverted conformational energy sequence, a very light molecular frame, an elevated torsional frequency, or a coupling with a second internal degree of freedom. If the splitting of either the protiated or deuterated form of an alcohol is already experimentally determined, the one of the second isotopolog can be estimated by three additional models with a mean symmetric deviation factor of 1.14, 1.19 and 1.15, respectively. It is shown that this can be achieved with a novel approach without any quantum chemical calculation by directly correlating experimental splittings of isotopologs across related species. -
Formation Mechanism of C60 Under Nonequilibrium and Irreversible
This article was downloaded by: [Eiji Osawa] On: 14 May 2012, At: 15:10 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Fullerenes, Nanotubes and Carbon Nanostructures Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/lfnn20 Formation Mechanism of C60 under Nonequilibrium and Irreversible Conditions — An Annotation a Eiji Ōsawa a NanoCarbon Research Institute, AREC, Shinshu University, Nagano, Japan Available online: 14 May 2012 To cite this article: Eiji Ōsawa (2012): Formation Mechanism of C60 under Nonequilibrium and Irreversible Conditions — An Annotation, Fullerenes, Nanotubes and Carbon Nanostructures, 20:4-7, 299-309 To link to this article: http://dx.doi.org/10.1080/1536383X.2012.655104 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and-conditions This article may be used for research, teaching, and private study purposes. Any substantial or systematic reproduction, redistribution, reselling, loan, sub-licensing, systematic supply, or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae, and drug doses should be independently verified with primary sources. The publisher shall not be liable for any loss, actions, claims, proceedings, demand, or costs or damages whatsoever or howsoever caused arising directly or indirectly in connection with or arising out of the use of this material. -
Investigation of Au Sams Photoclick Derivatization by PM-IRRAS Wilson Luoa, Sydney M
Investigation of Au SAMs Photoclick Derivatization by PM-IRRAS Wilson Luoa, Sydney M. Leggea, Johnny Luob,c, François Lagugné-Labarthet*a, and Mark S. Wor- kentin*a aDepartment of Chemistry and the Centre for Materials and Biomaterials Research, Western University, 1151 Rich- mond Street, London, ON, N6A 5B7, Canada. bDepartment of Biochemistry, Western University, London, Ontario N6A 5C1, Canada. cLawson Health Research Institute, London, Ontario N6C 2R5, Canada. ABSTRACT: In this work we present a clean one-step process for modifying headgroups of self-assembled monolayers (SAMs) on gold using photo-enabled click chemistry. A thiolated, cyclopropenone-caged strained alkyne precursor was first functionalized onto a flat gold substrate through self-assembly. Exposure of the cyclopropenone SAM to UV-A light initi- ated the efficient photochemical decarbonylation of the cyclopropenone moiety, revealing the strained alkyne capable of undergoing the interfacial strain-promoted alkyne-azide cycloaddition (SPAAC). Irradiated SAMs were derivatized with a series of model azides with varied hydrophobicity to demonstrate the generality of this chemical system for the modification and fine-tuning of the surface chemistry on gold substrates. SAMs were characterized at each step with polarization-mod- ulation infrared reflection-absorption spectroscopy (PM-IRRAS) to confirm successful functionalization and reactivity. Fur- thermore, to showcase the compatibility of this approach with biochemical applications, cyclopropenone SAMs were irra- diated and modified with azide-bearing cell adhesion peptides to promote human fibroblast cell adhesion, then imaged by live cell fluorescence microscopy. Thus, the “photoclick” methodology reported here represents an improved, versatile, catalyst-free protocol that allows for a high degree of control over the modification of material surfaces, with applicability in materials science as well as biochemistry. -
Standard Methods for the Examination of Water and Wastewater
Standard Methods for the Examination of Water and Wastewater Part 1000 INTRODUCTION 1010 INTRODUCTION 1010 A. Scope and Application of Methods The procedures described in these standards are intended for the examination of waters of a wide range of quality, including water suitable for domestic or industrial supplies, surface water, ground water, cooling or circulating water, boiler water, boiler feed water, treated and untreated municipal or industrial wastewater, and saline water. The unity of the fields of water supply, receiving water quality, and wastewater treatment and disposal is recognized by presenting methods of analysis for each constituent in a single section for all types of waters. An effort has been made to present methods that apply generally. Where alternative methods are necessary for samples of different composition, the basis for selecting the most appropriate method is presented as clearly as possible. However, samples with extreme concentrations or otherwise unusual compositions or characteristics may present difficulties that preclude the direct use of these methods. Hence, some modification of a procedure may be necessary in specific instances. Whenever a procedure is modified, the analyst should state plainly the nature of modification in the report of results. Certain procedures are intended for use with sludges and sediments. Here again, the effort has been to present methods of the widest possible application, but when chemical sludges or slurries or other samples of highly unusual composition are encountered, the methods of this manual may require modification or may be inappropriate. Most of the methods included here have been endorsed by regulatory agencies. Procedural modification without formal approval may be unacceptable to a regulatory body. -
Design, Synthesis and Reactivity of Cyclopropenone
DESIGN, SYNTHESIS AND REACTIVITY OF CYCLOPROPENONE- CONTAINING NINE MEMBERED CYCLIC ENEDIYNE AND ENYNE-ALLENE PRECURSORS AS PROTOTYPE PHOTOSWITCHABLE ANTITUMOR AGENTS by DINESH R. PANDITHAVIDANA (Under the Direction of Vladimir V. Popik) ABSTRACT The extreme cytotoxicity of natural enediyne antibiotics is attributed to the ability of the ( Z)-3-hexene-1,5-diyne (enediyne) and ( Z)-1,2,4-heptatrien-6-yne (enyne–allene) fragments incorporated into a 10- or 9-membered ring cyclic system to undergo cycloaromatization producing dDNA-damaging 1,4-diradicals. The rate of cyclization of enediynes to p-benzynes strongly depends on the distance between acetylenic termini, which in turn can be controlled by the ring size. Thus, 11-membered ring enediynes are stable, 10-membered ring analogs undergo slow cycloaromatization under ambient conditions or mild heating, 9- membered ring enediynes are virtually unknown and believed to undergo very fast spontaneous cyclization. Cyclic enyne-allenes have not been synthesized so far due to very facile Myers-Saito cyclization. We have developed thermally stable photo-precursors of 9-membered enediynes ( 2.22 , 2.26 ) and enyne-allene ( 2.44 ), in which one of the triple bonds is replaced by the cyclopropenone group. UV irradiation of 2.14 results in the efficient decarbonylation (Φ 254 = 0.34) and the formation of reactive enediyne 2.22. The latter undergoes clean cycloaromatization to 2,3-dihydro-1H- cyclopenta[b]naphthalen-1-ol ( 2.24 ) with a life-time of ca. 2 h in 2-propanol at 25 °C. The rate of this reaction depends linearly on the concentration of hydrogen donor and shows a primary kinetic isotope effect in 2-propanol-d8.