Inoculation of Triatoma Virus (Dicistroviridae: Cripavirus)
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Virus Particle Structures
Virus Particle Structures Virus Particle Structures Palmenberg, A.C. and Sgro, J.-Y. COLOR PLATE LEGENDS These color plates depict the relative sizes and comparative virion structures of multiple types of viruses. The renderings are based on data from published atomic coordinates as determined by X-ray crystallography. The international online repository for 3D coordinates is the Protein Databank (www.rcsb.org/pdb/), maintained by the Research Collaboratory for Structural Bioinformatics (RCSB). The VIPER web site (mmtsb.scripps.edu/viper), maintains a parallel collection of PDB coordinates for icosahedral viruses and additionally offers a version of each data file permuted into the same relative 3D orientation (Reddy, V., Natarajan, P., Okerberg, B., Li, K., Damodaran, K., Morton, R., Brooks, C. and Johnson, J. (2001). J. Virol., 75, 11943-11947). VIPER also contains an excellent repository of instructional materials pertaining to icosahedral symmetry and viral structures. All images presented here, except for the filamentous viruses, used the standard VIPER orientation along the icosahedral 2-fold axis. With the exception of Plate 3 as described below, these images were generated from their atomic coordinates using a novel radial depth-cue colorization technique and the program Rasmol (Sayle, R.A., Milner-White, E.J. (1995). RASMOL: biomolecular graphics for all. Trends Biochem Sci., 20, 374-376). First, the Temperature Factor column for every atom in a PDB coordinate file was edited to record a measure of the radial distance from the virion center. The files were rendered using the Rasmol spacefill menu, with specular and shadow options according to the Van de Waals radius of each atom. -
Trabajo Fin De Grado Biotecnología
FACULTAD DE CIENCIA Y TECNOLOGÍA. LEIOA TRABAJO FIN DE GRADO BIOTECNOLOGÍA CLONACIÓN, EXPRESIÓN Y PURIFICACIÓN DE LA PROTEÍNA VIRAL VP4 DE TRIATOMA VIRUS Alumno: Goikolea Egia, Julen Fecha: Junio 2014 Director: Curso Académico: Dr. Diego Marcelo Guérin Aguilar 2013/14 ÍNDICE 1. INTRODUCCIÓN Y OBJETIVOS ........................................................................ 1 1.1. Ausencia de la proteína viral VP4 en la estructura cristalográfica de la cápside ............................................................................................................. 4 1.2. Viroporinas .................................................................................................... 5 1.3. Mecanismos de acción de proteínas con actividad permeabilizadora de membrana ........................................................................................................ 8 1.4. Objetivos ........................................................................................................ 11 2. DESARROLLO ..................................................................................................... 12 2.1. Materiales y Métodos ...................................................................................... 12 2.1.1. Purificación de TrV .............................................................................. 12 2.1.2. Extracción del ARN ............................................................................. 12 2.1.3. Clonaje de VP4-pET28a ...................................................................... -
FFN41-Dec2020
FRUIT FLY TEPHRITID WORKERS DATABASE TWD NEWS FRUIT FLY NEWS FFN#41 December 2020 Fruit Fly News Guest of Honour Prof. KENG HONG TAN Guest of Honour: Professor Keng Hong Tan Prof Keng Hong Tan ("Hong" as his friends called him), is the Guest of Honor of the Fruit Fly News (FFN#41_December 2020). He agreed to share with us his walk of life, which took him to many places in the world and enabled him to meet many fruit fly workers. He kindly agreed to share his experience and some of his personal photos. Read more New Fruit Fly Projects National Fruit Fly Strategy 2020–2025 FruitFlyNet-II The Australian National Fruit Fly Strategy 2020– FruitFlyNet-ii is a Strategic Project for Open 2025 (NFFS) has been developed by the National Innovation funded by ENICBCMED/EU program. Fruit Fly Council (the Council) to provide a It involves 5 countries: Greece, Spain, Italy, framework for ongoing stakeholder cooperation Lebanon and Tunisia. The project aims to develop to support a contemporary, viable, cost-effective for the first time a fully automated e-monitoring, and coordinated national approach to fruit fly IPM spraying, e-solutions and environmental management. Read more friendly control of the olive fruit fly and the Medfly. Read more Project F3 Fruit Fly Free Fruit Fly IPM-Horizon 2020 South Africa, Mozambique and Belgium started a The Fruit fly Integrated Pest Management project, new project funded by the World Trade funded by the European Commission, shows Organization through their STDF programme. resilience and innovation during Covid-19 times. The objective is to develop a regionally Despite the obstacles, FF-IPM’s researchers harmonised framework for development and managed to produce high-quality results and held implementation of recognised Pest Free Areas virtual meetings and workshops. -
A Survey of Fruit-Feeding Insects and Their Parasitoids Occurring on Wild Olives, Olea Europaea Ssp
This article was downloaded by: [USDA National Agricultural Library] On: 11 February 2009 Access details: Access Details: [subscription number 790740294] Publisher Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Biocontrol Science and Technology Publication details, including instructions for authors and subscription information: http://www.informaworld.com/smpp/title~content=t713409232 A survey of fruit-feeding insects and their parasitoids occurring on wild olives, Olea europaea ssp. cuspidata, in the Eastern Cape of South Africa Nolwazi Mkize a; Kim A. Hoelmer b; Martin H. Villet a a Department of Zoology & Entomology, Rhodes University, Grahamstown, South Africa b United States Department of Agriculture, Agricultural Research Service, Beneficial Insect Introduction Research Unit, Newark, USA Online Publication Date: 01 January 2008 To cite this Article Mkize, Nolwazi, Hoelmer, Kim A. and Villet, Martin H.(2008)'A survey of fruit-feeding insects and their parasitoids occurring on wild olives, Olea europaea ssp. cuspidata, in the Eastern Cape of South Africa',Biocontrol Science and Technology,18:10,991 — 1004 To link to this Article: DOI: 10.1080/09583150802450154 URL: http://dx.doi.org/10.1080/09583150802450154 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.informaworld.com/terms-and-conditions-of-access.pdf This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. -
Virology Journal Biomed Central
Virology Journal BioMed Central Research Open Access The use of RNA-dependent RNA polymerase for the taxonomic assignment of Picorna-like viruses (order Picornavirales) infecting Apis mellifera L. populations Andrea C Baker* and Declan C Schroeder Address: Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK Email: Andrea C Baker* - [email protected]; Declan C Schroeder - [email protected] * Corresponding author Published: 22 January 2008 Received: 19 November 2007 Accepted: 22 January 2008 Virology Journal 2008, 5:10 doi:10.1186/1743-422X-5-10 This article is available from: http://www.virologyj.com/content/5/1/10 © 2008 Baker and Schroeder; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Single-stranded RNA viruses, infectious to the European honeybee, Apis mellifera L. are known to reside at low levels in colonies, with typically no apparent signs of infection observed in the honeybees. Reverse transcription-PCR (RT-PCR) of regions of the RNA-dependent RNA polymerase (RdRp) is often used to diagnose their presence in apiaries and also to classify the type of virus detected. Results: Analysis of RdRp conserved domains was undertaken on members of the newly defined order, the Picornavirales; focusing in particular on the amino acid residues and motifs known to be conserved. Consensus sequences were compiled using partial and complete honeybee virus sequences published to date. -
Parasitoids of Queensland Fruit Fly Bactrocera Tryoni in Australia and Prospects for Improved Biological Control
Insects 2012, 3, 1056-1083; doi:10.3390/insects3041056 OPEN ACCESS insects ISSN 2075-4450 www.mdpi.com/journal/insects/ Review Parasitoids of Queensland Fruit Fly Bactrocera tryoni in Australia and Prospects for Improved Biological Control Ashley L. Zamek 1,, Jennifer E. Spinner 2 Jessica L. Micallef 1, Geoff M. Gurr 3 and Olivia L. Reynolds 4,* 1 Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Woodbridge Road, Menangle, NSW 2568, Australia; E-Mails: [email protected] (A.L.Z.); [email protected] (J.L.M) 2 EH Graham Centre for Agricultural Innovation, NSW Department of Primary Industries and Charles Sturt University, Locked Bag 588, Wagga Wagga, NSW 2678, Australia; E-Mail: [email protected] 3 EH Graham Centre for Agricultural Innovation, NSW Department of Primary Industries and Charles Sturt University, Charles Sturt University, P.O. Box 883, Orange, NSW 2800, Australia; E-Mail: [email protected] 4 EH Graham Centre for Agricultural Innovation, NSW Department of Primary Industries and Charles Sturt University, Elizabeth Macarthur Agricultural Institute, Woodbridge Road, Menangle, NSW 2568, Australia Present address: Level 1, 1 Phipps Close DEAKIN ACT 2600 Australia. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +61-0-2-4640-6426; Fax: +61-0-2-4640-6300. Received: 3 September 2012; in revised form: 4 October 2012 / Accepted: 10 October 2012 / Published: 22 October 2012 Abstract: This review draws together available information on the biology, methods for study, and culturing of hymenopteran parasitoids of the Queensland fruit fly, Bactrocera tryoni, and assesses prospects for improving biological control of this serious pest. -
Data Mining Cdnas Reveals Three New Single Stranded RNA Viruses in Nasonia (Hymenoptera: Pteromalidae)
Insect Molecular Biology Insect Molecular Biology (2010), 19 (Suppl. 1), 99–107 doi: 10.1111/j.1365-2583.2009.00934.x Data mining cDNAs reveals three new single stranded RNA viruses in Nasonia (Hymenoptera: Pteromalidae) D. C. S. G. Oliveira*, W. B. Hunter†, J. Ng*, Small viruses with a positive-sense single-stranded C. A. Desjardins*, P. M. Dang‡ and J. H. Werren* RNA (ssRNA) genome, and no DNA stage, are known as *Department of Biology, University of Rochester, picornaviruses (infecting vertebrates) or picorna-like Rochester, NY, USA; †United States Department of viruses (infecting non-vertebrates). Recently, the order Agriculture, Agricultural Research Service, US Picornavirales was formally characterized to include most, Horticultural Research Laboratory, Fort Pierce, FL, USA; but not all, ssRNA viruses (Le Gall et al., 2008). Among and ‡United States Department of Agriculture, other typical characteristics – e.g. a small icosahedral Agricultural Research Service, NPRU, Dawson, GA, capsid with a pseudo-T = 3 symmetry and a 7–12 kb USA genome made of one or two RNA segments – the Picor- navirales genome encodes a polyprotein with a replication Abstractimb_934 99..108 module that includes a helicase, a protease, and an RNA- dependent RNA polymerase (RdRp), in this order (see Le We report three novel small RNA viruses uncovered Gall et al., 2008 for details). Pathogenicity of the infections from cDNA libraries from parasitoid wasps in the can vary broadly from devastating epidemics to appar- genus Nasonia. The genome of this kind of virus ently persistent commensal infections. Several human Ј is a positive-sense single-stranded RNA with a 3 diseases, from hepatitis A to the common cold (e.g. -
Structure of Nora Virus at 2.7 Å Resolution and Implications for Receptor Binding, Capsid Stability and Taxonomy
This document is downloaded from the VTT’s Research Information Portal https://cris.vtt.fi VTT Technical Research Centre of Finland Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy Laurinmäki, Pasi; Shakeel, Shabih; Ekström, Jens Ola; Mohammadi, Pezhman; Hultmark, Dan; Butcher, Sarah J. Published in: Scientific Reports DOI: 10.1038/s41598-020-76613-1 Published: 01/12/2020 Document Version Publisher's final version License CC BY Link to publication Please cite the original version: Laurinmäki, P., Shakeel, S., Ekström, J. O., Mohammadi, P., Hultmark, D., & Butcher, S. J. (2020). Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy. Scientific Reports, 10(1), [19675]. https://doi.org/10.1038/s41598-020-76613-1 VTT By using VTT’s Research Information Portal you are bound by the http://www.vtt.fi following Terms & Conditions. P.O. box 1000FI-02044 VTT I have read and I understand the following statement: Finland This document is protected by copyright and other intellectual property rights, and duplication or sale of all or part of any of this document is not permitted, except duplication for research use or educational purposes in electronic or print form. You must obtain permission for any other use. Electronic or print copies may not be offered for sale. Download date: 03. Oct. 2021 www.nature.com/scientificreports OPEN Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy Pasi Laurinmäki 1,2,7, Shabih Shakeel 1,2,5,7, Jens‑Ola Ekström3,4,7, Pezhman Mohammadi 1,6, Dan Hultmark 3,4 & Sarah J. -
Epidemiology of White Spot Syndrome Virus in the Daggerblade Grass Shrimp (Palaemonetes Pugio) and the Gulf Sand Fiddler Crab (Uca Panacea)
The University of Southern Mississippi The Aquila Digital Community Dissertations Fall 12-2016 Epidemiology of White Spot Syndrome Virus in the Daggerblade Grass Shrimp (Palaemonetes pugio) and the Gulf Sand Fiddler Crab (Uca panacea) Muhammad University of Southern Mississippi Follow this and additional works at: https://aquila.usm.edu/dissertations Part of the Animal Diseases Commons, Disease Modeling Commons, Epidemiology Commons, Virology Commons, and the Virus Diseases Commons Recommended Citation Muhammad, "Epidemiology of White Spot Syndrome Virus in the Daggerblade Grass Shrimp (Palaemonetes pugio) and the Gulf Sand Fiddler Crab (Uca panacea)" (2016). Dissertations. 895. https://aquila.usm.edu/dissertations/895 This Dissertation is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Dissertations by an authorized administrator of The Aquila Digital Community. For more information, please contact [email protected]. EPIDEMIOLOGY OF WHITE SPOT SYNDROME VIRUS IN THE DAGGERBLADE GRASS SHRIMP (PALAEMONETES PUGIO) AND THE GULF SAND FIDDLER CRAB (UCA PANACEA) by Muhammad A Dissertation Submitted to the Graduate School and the School of Ocean Science and Technology at The University of Southern Mississippi in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Approved: ________________________________________________ Dr. Jeffrey M. Lotz, Committee Chair Professor, Ocean Science and Technology ________________________________________________ Dr. Darrell J. Grimes, Committee Member Professor, Ocean Science and Technology ________________________________________________ Dr. Wei Wu, Committee Member Associate Professor, Ocean Science and Technology ________________________________________________ Dr. Reginald B. Blaylock, Committee Member Associate Research Professor, Ocean Science and Technology ________________________________________________ Dr. Karen S. Coats Dean of the Graduate School December 2016 COPYRIGHT BY Muhammad* 2016 Published by the Graduate School *U.S. -
Emerging Viral Diseases of Fish and Shrimp Peter J
Emerging viral diseases of fish and shrimp Peter J. Walker, James R. Winton To cite this version: Peter J. Walker, James R. Winton. Emerging viral diseases of fish and shrimp. Veterinary Research, BioMed Central, 2010, 41 (6), 10.1051/vetres/2010022. hal-00903183 HAL Id: hal-00903183 https://hal.archives-ouvertes.fr/hal-00903183 Submitted on 1 Jan 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Vet. Res. (2010) 41:51 www.vetres.org DOI: 10.1051/vetres/2010022 Ó INRA, EDP Sciences, 2010 Review article Emerging viral diseases of fish and shrimp 1 2 Peter J. WALKER *, James R. WINTON 1 CSIRO Livestock Industries, Australian Animal Health Laboratory (AAHL), 5 Portarlington Road, Geelong, Victoria, Australia 2 USGS Western Fisheries Research Center, 6505 NE 65th Street, Seattle, Washington, USA (Received 7 December 2009; accepted 19 April 2010) Abstract – The rise of aquaculture has been one of the most profound changes in global food production of the past 100 years. Driven by population growth, rising demand for seafood and a levelling of production from capture fisheries, the practice of farming aquatic animals has expanded rapidly to become a major global industry. -
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris Spelaea)
viruses Article Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea) Ian H Mendenhall 1,* , Dolyce Low Hong Wen 1,2, Jayanthi Jayakumar 1, Vithiagaran Gunalan 3, Linfa Wang 1 , Sebastian Mauer-Stroh 3,4 , Yvonne C.F. Su 1 and Gavin J.D. Smith 1,5,6 1 Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore; [email protected] (D.L.H.W.); [email protected] (J.J.); [email protected] (L.W.); [email protected] (Y.C.F.S.) [email protected] (G.J.D.S.) 2 NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore 119077, Singapore 3 Bioinformatics Institute, Agency for Science, Technology and Research, Singapore 138671, Singapore; [email protected] (V.G.); [email protected] (S.M.-S.) 4 Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore 5 SingHealth Duke-NUS Global Health Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore 168753, Singapore 6 Duke Global Health Institute, Duke University, Durham, NC 27710, USA * Correspondence: [email protected] Received: 30 January 2019; Accepted: 7 March 2019; Published: 12 March 2019 Abstract: Bats are unique mammals, exhibit distinctive life history traits and have unique immunological approaches to suppression of viral diseases upon infection. High-throughput next-generation sequencing has been used in characterizing the virome of different bat species. The cave nectar bat, Eonycteris spelaea, has a broad geographical range across Southeast Asia, India and southern China, however, little is known about their involvement in virus transmission. -
2008.005I (To Be Completed by ICTV Officers)
Taxonomic proposal to the ICTV Executive Committee This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). Code(s) assigned: 2008.005I (to be completed by ICTV officers) Short title: Creation of a new species in the genus, Cripavirus, family Dicistroviridae (e.g. 6 new species in the genus Zetavirus; re-classification of the family Zetaviridae etc.) Modules attached 1 2 3 4 5 (please check all that apply): 6 7 Author(s) with e-mail address(es) of the proposer: Dicistroviridae Study Group: Nobuhiko Nakashima ([email protected]), Karyn Johnson ([email protected]); Frank van der Wilk ([email protected]); Les Domier: ([email protected]); Peter Christian ([email protected]); Judy Chen ([email protected]) ; Tamas Bakonyi ([email protected]). ICTV-EC or Study Group comments and response of the proposer: MODULE 5: NEW SPECIES Code 2008.005I (assigned by ICTV officers) To create Homalodisca coagulata virus-1, a new species assigned as follows: Fill in all that apply. Ideally, species Genus: Cripavirus should be placed within a genus, but Subfamily: it is acceptable to propose a species Family: Dicistroviridae that is within a Subfamily or Family Order: Picornavirales but not assigned to an existing genus (in which case put “unassigned” in the genus box) Name(s) of proposed new species: Homalodisca coagulata virus-1 Argument to justify the creation of the new species: If the species are to be assigned to an existing genus, list the criteria for species demarcation and explain how the proposed members meet these criteria.