Binary Decision Diagrams: from Tree Compaction to Sampling?
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Studies on Enumeration of Acyclic Substructures in Graphs and Hypergraphs (グラフや超グラフに含まれる非巡回部分構造の列挙に関する研究)
CORE Metadata, citation and similar papers at core.ac.uk Provided by Hokkaido University Collection of Scholarly and Academic Papers Studies on Enumeration of Acyclic Substructures in Graphs and Hypergraphs (グラフや超グラフに含まれる非巡回部分構造の列挙に関する研究) Kunihiro Wasa February 2016 Division of Computer Science Graduate School of Information Science and Technology Hokkaido University Abstract Recently, due to the improvement of the performance of computers, we can easily ob- tain a vast amount of data defined by graphs or hypergraphs. However, it is difficult to look over all the data by mortal powers. Moreover, it is impossible for us to extract useful knowledge or regularities hidden in the data. Thus, we address to overcome this situation by using computational techniques such as data mining and machine learning for the data. However, we still confront a matter that needs to be dealt with the expo- nentially many substructures in input data. That is, we have to consider the following problem: given an input graph or hypergraph and a constraint, output all substruc- tures belonging to the input and satisfying the constraint without duplicates. In this thesis, we focus on this kind of problems and address to develop efficient enumeration algorithms for them. Since 1950's, substructure enumeration problems are widely studied. In 1975, Read and Tarjan proposed enumeration algorithms that list spanning trees, paths, and cycles for evaluating the electrical networks and studying program flow. Moreover, due to the demands from application area, enumeration algorithms for cliques, subtrees, and subpaths are applied to data mining and machine learning. In addition, enumeration problems have been focused on due to not only the viewpoint of application but also of the theoretical interest. -
A Binary Decision Diagram Based Approach on Improving Probabilistic Databases Kaj Derek Van Rijn University of Twente P.O
A Binary Decision Diagram based approach on improving Probabilistic Databases Kaj Derek van Rijn University of Twente P.O. Box 217, 7500AE Enschede The Netherlands [email protected] ABSTRACT to be insufficient [5]. This research hopes to come up with This research focusses on improving Binary Decision Di- algorithms that can create, evaluate and perform logical agram algorithms in the scope of probabilistic databases. operations on BDDs in a more efficient way. The driving factor is to create probabilistic databases that scale, the first order logic formulae generated when re- 2. BACKGROUND trieving data from these databases create a bottleneck 2.1 Probabilistic Databases in the scalability in the number of random variables. It Many real world databases contain uncertainty in correct- is believed that Binary Decision Diagrams are capable ness of the data, probabilistic databases deal with such of manipulating these formulae in a more scalable way. uncertainty. We assign probability values (between 0 and This research studies the complexity of existing BDD al- 1) to a group of entries in the database, the probabilities gorithms with regards to characteristics such as the depth in this group add to one. For example, entry A and B have and breadth of a tree, the scale and other metrics. These probability values of 0.4 and 0.6 respectively. Probabilistic results will be evaluated and compared to the charac- databases keep track of multiple states and play out dif- teristics of equations typically produced by probabilistic ferent scenarios, a query will not just return a single right databases. -
Enumeration of Maximal Cliques from an Uncertain Graph
1 Enumeration of Maximal Cliques from an Uncertain Graph Arko Provo Mukherjee #1, Pan Xu ∗2, Srikanta Tirthapura #3 # Department of Electrical and Computer Engineering, Iowa State University, Ames, IA, USA Coover Hall, Ames, IA, USA 1 [email protected] 3 [email protected] ∗ Department of Computer Science, University of Maryland A.V. Williams Building, College Park, MD, USA 2 [email protected] Abstract—We consider the enumeration of dense substructures (maximal cliques) from an uncertain graph. For parameter 0 < α < 1, we define the notion of an α-maximal clique in an uncertain graph. We present matching upper and lower bounds on the number of α-maximal cliques possible within a (uncertain) graph. We present an algorithm to enumerate α-maximal cliques whose worst-case runtime is near-optimal, and an experimental evaluation showing the practical utility of the algorithm. Index Terms—Graph Mining, Uncertain Graph, Maximal Clique, Dense Substructure F 1 INTRODUCTION of the most basic problems in graph mining, and has been applied in many settings, including in finding overlapping Large datasets often contain information that is uncertain communities from social networks [14, 17, 18, 19], finding in nature. For example, given people A and B, it may not overlapping multiple protein complexes [20], analysis of be possible to definitively assert a relation of the form “A email networks [21] and other problems in bioinformat- knows B” using available information. Our confidence in ics [22, 23, 24]. such relations are commonly quantified using probability, and we say that the relation exists with a probability of p, for While the notion of a dense substructure and methods some value p determined from the available information. -
An Introduction to Binary Decision Diagrams
An Introduction to Binary Decision Diagrams Henrik Reif Andersen x y y z 1 0 Lecture notes for Efficient Algorithms and Programs, Fall 1999. E-mail: [email protected]. Web: http://www.itu.dk/people/hra The IT University of Copenhagen Glentevej 67 2400 Copenhagen NV. 1 2 Preface This note is a short introduction to Binary Decision Diagrams. It provides some background knowledge and describes the core algorithms. More details can be found in Bryant’s original paper on Reduced Ordered Binary Decision Diagrams [Bry86] and the survey paper [Bry92]. A recent extension called Boolean Expression Diagrams is described in [AH97]. This note is a revision of an earlier version from fall 1996 (based on versions from 1995 and 1994). The major differences are as follows: Firstly, ROBDDs are now viewed as nodes of one global graph with one fixed ordering to reflect state-of-the-art of efficient BDD packages. The algorithms have been changed (and simplified) to reflect this fact. Secondly, a proof of the canonicity lemma has been added. Thirdly, the sections presenting the algorithms have been completely restructured. Finally, the project proposal has been revised. Acknowledgements Thanks to the students on the courses of fall 1994, 1995, and 1996 for helping me debug and improve the notes. Thanks are also due to Hans Rischel, Morten Ulrik Sørensen, Niels Maretti, Jørgen Staunstrup, Kim Skak Larsen, Henrik Hulgaard, and various people on the Internet who found typos and suggested improvements. 3 CONTENTS 4 Contents 1 Boolean Expressions 6 2 Normal Forms 7 3 Binary Decision Diagrams 8 4 Constructing and Manipulating ROBDDs 15 4.1 MK . -
M.Tech-DSCE- Academic Regulations & Syllabus – MLR18
ACADEMIC REGULATIONS AND COURSE STRUCTURE CHOICE BASED CREDIT SYSTEM MLR20 EMBEDDED SYSTEMS for Master of Technology (M.Tech) M. Tech. - Regular Two Year Degree Program (For batches admitted from the academic year 2020 - 2021) MLR Institute of Technology (Autonomous) Laxman Reddy Avenue, Dundigal Hyderabad – 500043, Telangana State www.mlrinstitutions.ac.in Email: [email protected] FOREWORD The autonomy is conferred on MLR Institute of Technology by UGC based on its performance as well as future commitment and competency to impart quality education. It is a mark of its ability to function independently in accordance with the set norms of the monitoring bodies like UGC and AICTE. It reflects the confidence of the UGC in the autonomous institution to uphold and maintain standards it expects to deliver on its own behalf and thus awards degrees on behalf of the college. Thus, an autonomous institution is given the freedom to have its own curriculum, examination system and monitoring mechanism, independent of the affiliating University but under its observance. MLR Institute of Technology is proud to win the credence of all the above bodies monitoring the quality in education and has gladly accepted the responsibility of sustaining, if not improving upon the standards and ethics for which it has been striving for more than a decade in reaching its present standing in the arena of contemporary technical education. As a follow up, statutory bodies like Academic Council and Boards of Studies are constituted with the guidance of the Governing Body of the College and recommendations of the JNTU Hyderabad to frame the regulations, course structure and syllabi under autonomous status. -
Matroid Enumeration for Incidence Geometry
Discrete Comput Geom (2012) 47:17–43 DOI 10.1007/s00454-011-9388-y Matroid Enumeration for Incidence Geometry Yoshitake Matsumoto · Sonoko Moriyama · Hiroshi Imai · David Bremner Received: 30 August 2009 / Revised: 25 October 2011 / Accepted: 4 November 2011 / Published online: 30 November 2011 © Springer Science+Business Media, LLC 2011 Abstract Matroids are combinatorial abstractions for point configurations and hy- perplane arrangements, which are fundamental objects in discrete geometry. Matroids merely encode incidence information of geometric configurations such as collinear- ity or coplanarity, but they are still enough to describe many problems in discrete geometry, which are called incidence problems. We investigate two kinds of inci- dence problem, the points–lines–planes conjecture and the so-called Sylvester–Gallai type problems derived from the Sylvester–Gallai theorem, by developing a new algo- rithm for the enumeration of non-isomorphic matroids. We confirm the conjectures of Welsh–Seymour on ≤11 points in R3 and that of Motzkin on ≤12 lines in R2, extend- ing previous results. With respect to matroids, this algorithm succeeds to enumerate a complete list of the isomorph-free rank 4 matroids on 10 elements. When geometric configurations corresponding to specific matroids are of interest in some incidence problems, they should be analyzed on oriented matroids. Using an encoding of ori- ented matroid axioms as a boolean satisfiability (SAT) problem, we also enumerate oriented matroids from the matroids of rank 3 on n ≤ 12 elements and rank 4 on n ≤ 9 elements. We further list several new minimal non-orientable matroids. Y. Matsumoto · H. Imai Graduate School of Information Science and Technology, University of Tokyo, Tokyo, Japan Y. -
Implementation Issues of Clique Enumeration Algorithm
05 Progress in Informatics, No. 9, pp.25–30, (2012) 25 Special issue: Theoretical computer science and discrete mathematics Research Paper Implementation issues of clique enumeration algorithm Takeaki UNO1 1National Institute of Informatics ABSTRACT A clique is a subgraph in which any two vertices are connected. Clique represents a densely connected structure in the graph, thus used to capture the local related elements such as clus- tering, frequent patterns, community mining, and so on. In these applications, enumeration of cliques rather than optimization is frequently used. Recent applications have large scale very sparse graphs, thus efficient implementations for clique enumeration is necessary. In this paper, we describe the algorithm techniques (not coding techniques) for obtaining effi- cient clique enumeration implementations. KEYWORDS maximal clique, enumeration, community mining, cluster mining, polynomial time, reverse search 1 Introduction A maximum clique is hard to find in the sense of time A graph is an object, composed of vertices, and edges complexity, since the problem is NP-hard. Finding a such that each edge connects two vertices. The fol- maximal clique is easy, and can be done in O(Δ2) time lowing is an example of a graph, composed of vertices where Δ is the maximum degree of the graph. Cliques 0, 1, 2, 3, 4, 5 and edges connecting 0 and 1, 1 and 2, 0 can be considered as representatives of dense substruc- and 3, 1 and 3, 1 and 4, 3 and 4. tures of the graphs to be analyzed, the clique enumera- tion has many applications in real-world problems, such as cluster enumeration, community mining, classifica- 0 12 tion, and so on. -
Parametrised Enumeration
Parametrised Enumeration Arne Meier Februar 2020 color guide (the dark blue is the same with the Gottfried Wilhelm Leibnizuniversity Universität logo) Hannover c: 100 m: 70 Institut für y: 0 k: 0 Theoretische c: 35 m: 0 y: 10 Informatik k: 0 c: 0 m: 0 y: 0 k: 35 Fakultät für Elektrotechnik und Informatik Institut für Theoretische Informatik Fachgebiet TheoretischeWednesday, February 18, 15 Informatik Habilitationsschrift Parametrised Enumeration Arne Meier geboren am 6. Mai 1982 in Hannover Februar 2020 Gutachter Till Tantau Institut für Theoretische Informatik Universität zu Lübeck Gutachter Stefan Woltran Institut für Logic and Computation 192-02 Technische Universität Wien Arne Meier Parametrised Enumeration Habilitationsschrift, Datum der Annahme: 20.11.2019 Gutachter: Till Tantau, Stefan Woltran Gottfried Wilhelm Leibniz Universität Hannover Fachgebiet Theoretische Informatik Institut für Theoretische Informatik Fakultät für Elektrotechnik und Informatik Appelstrasse 4 30167 Hannover Dieses Werk ist lizenziert unter einer Creative Commons “Namensnennung-Nicht kommerziell 3.0 Deutschland” Lizenz. Für Julia, Jonas Heinrich und Leonie Anna. Ihr seid mein größtes Glück auf Erden. Danke für eure Geduld, euer Verständnis und eure Unterstützung. Euer Rückhalt bedeutet mir sehr viel. ♥ If I had an hour to solve a problem, I’d spend 55 minutes thinking about the problem and 5 min- “ utes thinking about solutions. ” — Albert Einstein Abstract In this thesis, we develop a framework of parametrised enumeration complexity. At first, we provide the reader with preliminary notions such as machine models and complexity classes besides proving them to be well-chosen. Then, we study the interplay and the landscape of these classes and present connections to classical enumeration classes. -
Enumeration Algorithms for Conjunctive Queries with Projection
Enumeration Algorithms for Conjunctive Queries with Projection Shaleen Deep ! Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, USA Xiao Hu ! Department of Computer Sciences, Duke University, Durham, North Carolina, USA Paraschos Koutris ! Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, USA Abstract We investigate the enumeration of query results for an important subset of CQs with projections, namely star and path queries. The task is to design data structures and algorithms that allow for efficient enumeration with delay guarantees after a preprocessing phase. Our main contribution isa series of results based on the idea of interleaving precomputed output with further join processing to maintain delay guarantees, which maybe of independent interest. In particular, for star queries, we design combinatorial algorithms that provide instance-specific delay guarantees in linear preprocessing time. These algorithms improve upon the currently best known results. Further, we show how existing results can be improved upon by using fast matrix multiplication. We also present new results involving tradeoff between preprocessing time and delay guarantees for enumeration ofpath queries that contain projections. CQs with projection where the join attribute is projected away is equivalent to boolean matrix multiplication. Our results can therefore also be interpreted as sparse, output-sensitive matrix multiplication with delay guarantees. 2012 ACM Subject Classification Theory of computation → Database theory Keywords and phrases Query result enumeration, joins Digital Object Identifier 10.4230/LIPIcs.ICDT.2021.3 Funding This research was supported in part by National Science Foundation grants CRII-1850348 and III-1910014 Acknowledgements We would like to thank the anonymous reviewers for their careful reading and valuable comments that contributed greatly in improving the manuscript. -
Using Binary Decision Diagrams to Enumerate Inductive Logic Programming Solutions
Using Binary Decision Diagrams to Enumerate Inductive Logic Programming Solutions Hikaru Shindo1, Masaaki Nishino2, and Akihiro Yamamoto1 1 Graduate School of Informatics, Kyoto University, Kyoto, Japan [email protected] 2 NTT Communication Science Laboratories, NTT Corporation, Kyoto, Japan Abstract. This paper proposes a method for efficiently enumerating all solutions of a given ILP problem. Inductive Logic Programming (ILP) is a machine learning technique that assumes that all data, background knowledge, and hypotheses can be represented by first-order logic. The solution of an ILP problem is called a hypothesis. Most ILP studies pro- pose methods that find only one hypothesis per problem. In contrast, the proposed method uses Binary Decision Diagrams (BDDs) to enumerate all hypotheses of a given ILP problem. A BDD yields a very compact graph representation of a Boolean function. Once all hypotheses are enu- merated, the user can select the preferred hypothesis or compare the hy- potheses using an evaluation function. We propose an efficient recursive algorithm for constructing a BDD that represents the set of all hypothe- ses. In addition, we propose an efficient method to get the best hypothesis given an evaluation function. We empirically show the practicality of our approach on ILP problems using real data. Keywords: Inductive Logic Programming · Binary Decision Diagram. 1 Introduction This paper proposes a method that can efficiently enumerate all solutions of a given ILP problem. Inductive Logic Programming (ILP) is a machine learning technique that assuming that each datum, background knowledge, and hypothe- sis can be represented by first-order logic. Our work is based on the foundation of ILP established by Plotkin [17] and Shapiro [21]: inductive inference with clausal logic. -
An Optimal Key Enumeration Algorithm and Its Application to Side-Channel Attacks
An Optimal Key Enumeration Algorithm and its Application to Side-Channel Attacks Nicolas Veyrat-Charvillon?, Beno^ıtG´erard??, Mathieu Renauld???, Fran¸cois-Xavier Standaerty UCL Crypto Group, Universit´ecatholique de Louvain. Place du Levant 3, B-1348, Louvain-la-Neuve, Belgium. Abstract. Methods for enumerating cryptographic keys based on par- tial information obtained on key bytes are important tools in crypt- analysis. This paper discusses two contributions related to the practical application and algorithmic improvement of such tools. On the one hand, we observe that modern computing platforms al- low performing very large amounts of cryptanalytic operations, approx- imately reaching 250 to 260 block cipher encryptions. As a result, cryp- tographic key sizes for such ciphers typically range between 80 and 128 bits. By contrast, the evaluation of leaking devices is generally based on distinguishers with very limited computational cost, such as Kocher's Differential Power Analysis. We bridge the gap between these cryptana- lytic contexts and show that giving side-channel adversaries some com- puting power has major consequences for the security of leaking devices. For this purpose, we first propose a Bayesian extension of non-profiled side-channel attacks that allows us to rate key candidates in function of their respective probabilities. Next, we investigate the impact of key enumeration taking advantage of this Bayesian formulation, and quantify the resulting reduction in the data complexity of the attacks. On the other hand, we observe that statistical cryptanalyses usually try to reduce the number and size of lists corresponding to partial informa- tion on key bytes, in order to limit the time and memory complexity of the key enumeration. -
Binary Decision Diagrams
An Intro duction to Binary Decision Diagrams Henrik Reif Andersen x y y z 1 0 Lecture notes for Advanced Algorithms E Octob er Minor revisions Apr Email hraitdtudk Web httpwwwitdtudkhra Department of Information Technology Technical University of Denmark Building DK Lyngby Denmark Preface This note is a short intro duction to Binary Decision Diagrams It provides some back ground knowledge and describ es the core algorithms More details can b e found in Bryants original pap er on Reduced Ordered Binary Decision Diagrams Bry and the survey pap er Bry A recent extension called Bo olean Expression Diagrams is describ ed in AH This note is a revision of an earlier version from fall based on versions from and The ma jor dierences are as follows Firstly ROBDDs are now viewed as no des of one global graph with one xed ordering to reect stateoftheart of ecient BDD packages The algorithms have b een changed and simplied to reect this fact Secondly a pro of of the canonicity lemma has b een added Thirdly the sections presenting the algorithms have b een completely restructured Finally the pro ject prop osal has b een revised Acknowledgements Thanks to the students on the courses of fall and for helping me debug and improve the notes Thanks are also due to Hans Rischel Morten Ulrik Srensen Niels Maretti Jrgen Staunstrup Kim Skak Larsen Henrik Hulgaard and various p eople on the Internet who found typ os and suggested improvements CONTENTS Contents Bo olean Expressions Normal Forms Binary Decision Diagrams Constructing and Manipulating