Myoclonus Epilepsy Associated with Ragged-Red Fibers
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Mitochondrial Trnaleu(Uur) May Cause an MERRF Syndrome
J7ournal ofNeurology, Neurosurgery, and Psychiatry 1996;61:47-51 47 The A to G transition at nt 3243 of the J Neurol Neurosurg Psychiatry: first published as 10.1136/jnnp.61.1.47 on 1 July 1996. Downloaded from mitochondrial tRNALeu(uuR) may cause an MERRF syndrome Gian Maria Fabrizi, Elena Cardaioli, Gaetano Salvatore Grieco, Tiziana Cavallaro, Alessandro Malandrini, Letizia Manneschi, Maria Teresa Dotti, Antonio Federico, Giancarlo Guazzi Abstract Two distinct maternally inherited encephalo- Objective-To verify the phenotype to myopathies with ragged red fibres have been genotype correlations of mitochondrial recognised on clinical grounds: MERRF, DNA (mtDNA) related disorders in an which is characterised by myoclonic epilepsy, atypical maternally inherited encephalo- skeletal myopathy, neural deafness, and optic myopathy. atrophy,' and MELAS, which is defined by Methods-Neuroradiological, morpholog- stroke-like episodes in young age, episodic ical, biochemical, and molecular genetic headache and vomiting, seizures, dementia, analyses were performed on the affected lactic acidosis, skeletal myopathy, and short members of a pedigree harbouring the stature.2 Molecular genetic studies later con- heteroplasmic A to G transition at firmed the nosological distinction between the nucleotide 3243 of the mitochondrial two disorders, showing that MERRF is strictly tRNAI-u(UR), which is usually associated associated with two mutations of the mito- with the syndrome of mitochondrial chondrial tRNALYs at nucleotides 83443 and encephalomyopathy, lactic -
Stable and Widespread Structural Heteroplasmy in Chloroplast Genomes Revealed by a New Long-Read Quantification Method
bioRxiv preprint doi: https://doi.org/10.1101/692798; this version posted July 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Classification: Biological Sciences, Evolution Title: Stable and widespread structural heteroplasmy in chloroplast genomes revealed by a new long-read quantification method Weiwen Wang a, Robert Lanfear a a Research School of Biology, Australian National University, Canberra, ACT, Australia, 2601 Corresponding Author: Weiwen Wang, [email protected] Robert Lanfear, [email protected], +61 2 6125 2536 Keywords: Single copy inversion, flip-flop recombination, chloroplast genome structural heteroplasmy 1 bioRxiv preprint doi: https://doi.org/10.1101/692798; this version posted July 11, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Abstract 2 The chloroplast genome usually has a quadripartite structure consisting of a large 3 single copy region and a small single copy region separated by two long inverted 4 repeats. It has been known for some time that a single cell may contain at least two 5 structural haplotypes of this structure, which differ in the relative orientation of the 6 single copy regions. However, the methods required to detect and measure the 7 abundance of the structural haplotypes are labour-intensive, and this phenomenon 8 remains understudied. -
Progressive Increase in Mtdna 3243A>G Heteroplasmy Causes Abrupt
Progressive increase in mtDNA 3243A>G PNAS PLUS heteroplasmy causes abrupt transcriptional reprogramming Martin Picarda, Jiangwen Zhangb, Saege Hancockc, Olga Derbenevaa, Ryan Golhard, Pawel Golike, Sean O’Hearnf, Shawn Levyg, Prasanth Potluria, Maria Lvovaa, Antonio Davilaa, Chun Shi Lina, Juan Carlos Perinh, Eric F. Rappaporth, Hakon Hakonarsonc, Ian A. Trouncei, Vincent Procaccioj, and Douglas C. Wallacea,1 aCenter for Mitochondrial and Epigenomic Medicine, Children’s Hospital of Philadelphia and the Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104; bSchool of Biological Sciences, The University of Hong Kong, Hong Kong, People’s Republic of China; cTrovagene, San Diego, CA 92130; dCenter for Applied Genomics, Division of Genetics, Department of Pediatrics, and hNucleic Acid/Protein Research Core Facility, Children’s Hospital of Philadelphia, Philadelphia, PA 19104; eInstitute of Genetics and Biotechnology, Warsaw University, 00-927, Warsaw, Poland; fMorton Mower Central Research Laboratory, Sinai Hospital of Baltimore, Baltimore, MD 21215; gGenomics Sevices Laboratory, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806; iCentre for Eye Research Australia, Royal Victorian Eye and Ear Hospital, East Melbourne, VIC 3002, Australia; and jDepartment of Biochemistry and Genetics, National Center for Neurodegenerative and Mitochondrial Diseases, Centre Hospitalier Universitaire d’Angers, 49933 Angers, France Contributed by Douglas C. Wallace, August 1, 2014 (sent for review May -
Intra-Individual Heteroplasmy in the Gentiana Tongolensis Plastid Genome (Gentianaceae)
Intra-individual heteroplasmy in the Gentiana tongolensis plastid genome (Gentianaceae) Shan-Shan Sun1, Xiao-Jun Zhou1, Zhi-Zhong Li2,3, Hong-Yang Song1, Zhi-Cheng Long4 and Peng-Cheng Fu1 1 College of Life Science, Luoyang Normal University, Luoyang, Henan, People’s Republic of China 2 Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, People’s Republic of China 3 University of Chinese Academy of Sciences, Beijing, People’s Republic of China 4 HostGene. Co. Ltd., Wuhan, Hubei, People’s Republic of China ABSTRACT Chloroplasts are typically inherited from the female parent and are haploid in most angiosperms, but rare intra-individual heteroplasmy in plastid genomes has been reported in plants. Here, we report an example of plastome heteroplasmy and its characteristics in Gentiana tongolensis (Gentianaceae). The plastid genome of G. tongolensis is 145,757 bp in size and is missing parts of petD gene when compared with other Gentiana species. A total of 112 single nucleotide polymorphisms (SNPs) and 31 indels with frequencies of more than 2% were detected in the plastid genome, and most were located in protein coding regions. Most sites with SNP frequencies of more than 10% were located in six genes in the LSC region. After verification via cloning and Sanger sequencing at three loci, heteroplasmy was identified in different individuals. The cause of heteroplasmy at the nucleotide level in plastome of G. tongolensis is unclear from the present data, although biparental plastid inheritance and transfer of plastid DNA seem to be most likely. This study implies that botanists should reconsider the heredity and evolution of chloroplasts and be 19 February 2019 Submitted cautious with using chloroplasts as genetic markers, especially in Gentiana. -
Progressive Myoclonic Epilepsy
www.neurologyindia.com Indian Perspective Progressive myoclonic epilepsy P. Satishchandra, S. Sinha Department of Neurology, National Institute of Mental Health & Neurosciences, Bangalore, India Abstract Progressive myoclonic epilepsy (PME) is a disease complex and is characterized by the development of relentlessly progressive myoclonus, cognitive impairment, ataxia, and other neurologic deficits. It encompasses different diagnostic entities and the common causes include Lafora body disease, neuronal ceroid lipofuscinoses, Unverricht–Lundborg disease, myoclonic epilepsy with ragged-red fiber (MERRF) syndrome, sialidoses, dentato-rubro-pallidal atrophy, storage diseases, and some of the inborn errors of metabolism, among others. Recent advances in this area have clarified molecular genetic basis, biological basis, and natural history, and also provided Address for correspondence: a rational approach to the diagnosis. Most of the large studies related to PME are from Dr. P. Satishchandra, south India from a single center, National Institute of Mental Health and Neurological National Institute of Mental Health Sciences (NIMHANS), Bangalore. However, there are a few case reports and small series & Neurosciences (NIMHANS), Hosur Road, Bangalore - 560 029, about Lafora body disease, neuronal ceroid lipofuscinoses and MERRF from India. We India. review the clinical and research experience of a cohort of PME patients evaluated at E-mail: drpsatishchandra@yahoo. NIMHANS over the last two decades, especially the phenotypic, electrophysiologic, -
Mitochondrial Heteroplasmy Shifting As a Potential Biomarker of Cancer Progression
International Journal of Molecular Sciences Review Mitochondrial Heteroplasmy Shifting as a Potential Biomarker of Cancer Progression Carlos Jhovani Pérez-Amado 1,2 , Amellalli Bazan-Cordoba 1,2, Alfredo Hidalgo-Miranda 1 and Silvia Jiménez-Morales 1,* 1 Laboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City 14610, Mexico; [email protected] (C.J.P.-A.); [email protected] (A.B.-C.); [email protected] (A.H.-M.) 2 Programa de Maestría y Doctorado, Posgrado en Ciencias Bioquímicas, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico * Correspondence: [email protected] Abstract: Cancer is a serious health problem with a high mortality rate worldwide. Given the rele- vance of mitochondria in numerous physiological and pathological mechanisms, such as adenosine triphosphate (ATP) synthesis, apoptosis, metabolism, cancer progression and drug resistance, mito- chondrial genome (mtDNA) analysis has become of great interest in the study of human diseases, including cancer. To date, a high number of variants and mutations have been identified in different types of tumors, which coexist with normal alleles, a phenomenon named heteroplasmy. This mecha- nism is considered an intermediate state between the fixation or elimination of the acquired mutations. It is suggested that mutations, which confer adaptive advantages to tumor growth and invasion, are enriched in malignant cells. Notably, many recent studies have reported a heteroplasmy-shifting phenomenon as a potential shaper in tumor progression and treatment response, and we suggest that each cancer type also has a unique mitochondrial heteroplasmy-shifting profile. So far, a plethora Citation: Pérez-Amado, C.J.; Bazan-Cordoba, A.; Hidalgo-Miranda, of data evidencing correlations among heteroplasmy and cancer-related phenotypes are available, A.; Jiménez-Morales, S. -
Mitochondrial Replacement Therapy by Nuclear Transfer in Human Oocytes
Adapted from Protocol #: N-001 Mitochondrial Replacement Therapy By Nuclear Transfer In Human Oocytes Background and Significance Mitochondria, which are the “powerhouse” for most eukaryotic cells, are assembled with proteins encoded by the nuclear genome (nDNA) and mitochondrial genome (mtDNA) and are exclusively maternally inherited. mtDNA is a circular molecule consisting of 16,569 base pairs (bp) and encodes 13 polypeptides, as well as 22 transfer RNAs and two ribosomal RNAs (Wallace 1999). At least 1 in 5,000 people in the general population have one mtDNA mutation (Gorman et al., 2015), which can cause mitochondrial dysfunction and maternally inherited diseases (Schaefer et al., 2008; Wallace et al., 1988). When wild type and mutant mitochondria genomes co-exist (heteroplasmy), the severity of clinical symptoms is often associated with the level of heteroplasmy (Freyer et al., 2012). For example, mtDNA 8993 T>G mutation is associated with variable syndromes ranging from neuropathy, ataxia, and retinitis pigmentosa (NARP) (Tatuch et al., 1992) at the level of 70-90% mutation load to maternally inherited Leigh syndrome at level of 95% mutation load. Furthermore, when mtDNA 8993 T>G mutation load is less than 30%, a healthy child can be produced (Sallevelt et al., 2013), showing that mutation levels before displaying symptoms of disease depend on individual mutation tolerance thresholds. Due to absence of effective treatment of mitochondrial disorders, the prevention of the transmission from mother to offspring is considered as the key management. Current options for prevention of transmission of mutated mtDNA include adoptions or use of donor eggs. Preimplantation genetic diagnosis (PGD) has been offered to detect pathogenic mtDNA mutation (Steffann et al., 2006, Craven et al., 2010) in order to select embryos with reduced mutation load. -
Wo 2009/039966 A2
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date PCT (10) International Publication Number 2 April 2009 (02.04.2009) WO 2009/039966 A2 (51) International Patent Classification: (74) Agent: ARTH, Hans-Lothar; ABK Patent Attorneys, Jas- A61K 38/17 (2006.01) A61P 11/00 (2006.01) minweg 9, 14052 Berlin (DE). A61K 38/08 (2006.01) A61P 25/28 (2006.01) A61P 31/20 (2006.01) A61P 31/00 (2006.01) (81) Designated States (unless otherwise indicated, for every A61P 3/00 (2006.01) A61P 35/00 (2006.01) kind of national protection available): AE, AG, AL, AM, A61P 9/00 (2006.01) A61P 37/00 (2006.01) AO, AT,AU, AZ, BA, BB, BG, BH, BR, BW, BY,BZ, CA, CH, CN, CO, CR, CU, CZ, DE, DK, DM, DO, DZ, EC, EE, (21) International Application Number: EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, PCT/EP2008/007500 IL, IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY,MA, MD, ME, MG, MK, MN, MW, (22) International Filing Date: MX, MY,MZ, NA, NG, NI, NO, NZ, OM, PG, PH, PL, PT, 9 September 2008 (09.09.2008) RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY,TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, (25) Filing Language: English ZW (26) Publication Language: English (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (30) Priority Data: GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, 07017754.8 11 September 2007 (11.09.2007) EP ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), European (AT,BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, (71) Applicant (for all designated States except US): MONDO- FR, GB, GR, HR, HU, IE, IS, IT, LT,LU, LV,MC, MT, NL, BIOTECH LABORATORIES AG [LLLI]; Herrengasse NO, PL, PT, RO, SE, SI, SK, TR), OAPI (BF, BJ, CF, CG, 21, FL-9490 Vaduz (LI). -
Non-Commercial Use Only
Neurology International 2018; volume 10:7473 Cognitive impairment in neuromuscular diseases: Introduction Correspondence: Francisco Victor Costa Marinho, Federal University of Piauí, Brazil. A systematic review Neuromuscular diseases present a wide Brain Mapping and Plasticity Laboratory- Av. variety of clinical manifestations, but their São Sebastião nº2819 – Nossa Sra. de Fátima effects on the cognitive function spectrum Marco Orsini,1,2 Ana Carolina – Parnaíba, PI, CEP: 64202-020, Brazil. are still poorly understood.1 In contrast to the Tel.: +55.86.994178117. Andorinho de F. Ferreira,3 studies on how altered executive functions in E-mail: [email protected] 3,4 Anna Carolina Damm de Assis, mental disorders such as anxiety, depression 3 2 Thais Magalhães, Silmar Teixeira, and bipolar disorder can affect motor perfor- Key words: Cognitive Impairment; Victor Hugo Bastos,2 Victor Marinho,2 mance,2-4 the mechanisms by which essen- Neuromuscular Diseases; Motor Neuron Thomaz Oliveira,2 Rossano Fiorelli,1 tially motor dysfunctions can affect cogni- Diseases; Dystrophinopathies; Mitochondrial Acary Bulle Oliveira,4 tive performance still remain poorly under- Disorders. 5 stood and studied.5-8 Although it is known Marcos R.G. de Freitas Contributions: the authors contributed equally. that neuromuscular diseases mainly affect 1Master’s Program in Health Applied the motor functioning of the patient, the cog- Sciences, Severino Sombra University, Conflict of interest: the authors declare no nitive effects of these conditions can be sig- Vasssouras, Rio de Janeiro; 2Brain potential conflict of interest. nificant.5 This can occur from molecular Mapping and Plasticity Laboratory, defects that significantly affect neuromotor Funding: none. Federal University of Piauí, Parnaíba; functioning but also participate in the func- 3Department of Neurology, Federal tioning of neural networks involved in cogni- Received for publication: 31 October 2017. -
PGD for Mitochondrial Diseases Is Licensed in the UK
Scientific review of the safety and efficacy of methods to avoid mitochondrial disease through assisted conception Report provided to the Human Fertilisation and Embryology Authority, April 2011 Review panel co-chairs: Professor Neva Haites, University of Aberdeen and Dr Robin Lovell-Badge, Medical Research Council National Institute for Medical Research Contents Page Executive summary 3 1. Introduction, scope and objectives 5 2. Background information on mitochondrial biology and disease 6 3. Review of preimplantation genetic diagnosis to avoid 10 mitochondrial disease 4. Review of maternal spindle transfer and pronuclear transfer to 13 avoid mitochondrial disease 5. Further research 20 6. Conclusions 22 Annex A: Clinical disorders due to mutations in mtDNA 25 Annex B: Methodology of review 27 Annex C: Evidence reviewed 29 Annex D: Glossary 38 Page 2 of 45 Executive summary Mitochondria are small structures present in human cells that produce a cell‟s energy. They contain a small amount of DNA that is inherited exclusively from the mother through the mitochondria present in her eggs. Mutations in this mitochondrial DNA can cause a range of rare but serious diseases, which can be fatal. However, there are several novel methods with the potential to reduce the transmission of abnormal mitochondrial DNA from a mother to her child, and thus avoid mitochondrial disease in the child and subsequent generations. The Human Fertilisation and Embryology (HFE) Act 1990 (as amended) only permits eggs and embryos that have not had their nuclear or mitochondrial DNA altered to be used for treatment. However, the Act allows for regulations to be passed by Parliament that will allow techniques that alter the DNA of an egg or embryo to be used in assisted conception, to prevent the transmission of serious mitochondrial disease. -
Heteroplasmy of Chloroplast DNA in Medicago
Plant Molecular Biology 12:3-11 (1989) © Kluwer Academic Publishers, Dordrecht - Printed in the Netherlands Heteroplasmy of chloroplast DNA in Medicago Lowell B. Johnson 1 and Jeffrey D. Palmer 2 1Department of Plant Pathology, Throckmorton Hall, Kansas State University, Manhattan, KS 66506, USA; 2Department of Biology, University of Michigan, Ann Arbor, MI 48109-1048, USA Received 15 June 1988; accepted in revised form 27 September 1988 Key words: alfalfa, chloroplast DNA, chloroplast DNA heterogeneity, heteroplasmy, Medicago, restriction mapping Abstract Two chloroplast DNA (cpDNA) regions exhibiting a high frequency of intra- or inter-species variation were identified in 12 accessions of the genus Medicago. Restriction maps of both regions were prepared for alfalfa, and the probable nature of the events causing the DNA differences was identified. Specific DNA fragments were then cloned for use in identification of variants in each region. Two each of M. sativa ssp. varia and ssp. caerulea and one of six M. sativa ssp. sativa single plants examined possessed cpDNA heterogeneity as identified by screening extracts for fragments generated by the presence and absence of a specific Xba I restric- tion site. Three plants of M. sativa ssp. sativa, two of each of sspp. varia and caerulea, and three M. scutellata were also examined for single-plant cpDNA heterogeneity at a hypervariable region where differences resulted from small insertion-deletion events. A single M. scutellata plant with mixed cpDNAs was identified. Sorting out was seen when one ssp. sativa plant with mixed plastid types identifiable by the Xba I restriction site differ- ence was vegetatively propagated. This indicated that the initial stock plant was heteroplastidic. -
Breakthrough Brings Hope of Treatments for Muscle Diseases
February 2018 Breakthrough brings hope of treatments for muscle diseases Recently, NeuroVive was able to report a breakthrough in the company’s research on mitochondrial myopathy. In experimental studies conducted by NeuroVive’s partner Karolinska Institutet under the leader ship of Professor Håkan Westerblad, NeuroVive’s model substance showed positive effects that could counteract the disease progression in mitochondrial myopathy and potentially other muscle diseases. Mitochondrial myopathy cramps. The most common mitochondrial myopathies Mitochondrial myopathy is a group of genetic muscular are KSS (KearnsSayre Syndrome), CPEO (Chronic Pro diseases caused by congenital injuries to the cells’ gressive External Ophthalmoplegia), MERRF syndrome power plants, the mitochondria. Mitochondrial myo (Myoclonic Epilepsy with Ragged Red Fibers) and MELAS pathy is manifested by muscle weakness, fatigue and (Mitochondrial myopathy, Encephalopathy, Lactic Aci exercise intolerance, and is often associated with other dosis and Strokelike episodes). The disease usually symptoms of genetic mitochondrial disease, such as develops from general progressive muscle weakness heart failure and rhythm disturbances, dementia, agi to death, which, combined with few or no treatment tation and periods of stroke, deafness, blindness, hang options creates a significant medical need. ing eyelids, restricted eye movement, vomiting and NeuroVive Pharmaceutical AB (publ) [email protected] Medicon Village • SE 223 81 Lund, Sweden +46 46 275 62 20 NeuroVive – Newsletter February 2018 NeuroVives research in genetic mitochondrial including suppressing the immune system. Thus, the diseases researchers at Karolinska Institutet have instead stud NeuroVive’s NVP025 project is developed primarily ied NeuroVive’s new cyclophilin inhibitor, which is con for mitochondrial myopathy, which together with the sidered to have higher specificity and tolerability than KL1333 and NVP015 projects constitute the company’s ciclosporin.