bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423673; this version posted December 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. DNA sequence-dependent formation of heterochromatin nanodomains Graeme J. Thorn1,2, Christopher T. Clarkson1,3, Anne Rademacher4, Hulkar Mamayusupova1, Gunnar Schotta5, Karsten Rippe4,*, Vladimir B. Teif1,* 1School of LIfe Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, UK. 2Current address: Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK. 3Current address: University College London, Gower St, Bloomsbury, London WC1E 6BT, UK. 4Division of Chromatin Networks, German Cancer Research Center (DKFZ) & Bioquant, Heidelberg, 69120, Germany. 5Ludwig-Maximilians-Universität München, Geschwister-Scholl-Platz 1, 80539 München, Germany *Correspondence may be addressed to Vladimir B Teif (
[email protected]) or Karsten Rippe (
[email protected]). 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.12.20.423673; this version posted December 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract The mammalian epigenome contains thousands of heterochromatin nanodomains (HNDs) marked by di- and trimethylation of histone H3 at lysine 9, which have a typical size of 3-10 nucleosomes. However, the (epi)genetic determinants of their location and boundaries are only partly understood.