Enhanced Acetogenesis of Waste Activated Sludge by Conditioning with Processed Organic Wastes in Co-Fermentation: Kinetics, Performance and Microbial Response
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Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation
fermentation Article Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation Chunlei Yang Institute of Dairy Science, MoE Key Laboratory of Molecular Animal Nutrition, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] Received: 2 May 2018; Accepted: 4 June 2018; Published: 7 June 2018 Abstract: To better understand the effects of host selection on gut acetogens and their potential role in syngas fermentation, the composition and hydrogenotrophic features of acetogen populations in cow and sheep rumens, rabbit ceca, and horse feces were studied. The acetogens detected in horses and rabbits were more phylogenetically diverse than those in cows and sheep, suggesting that the host species plays an important role in shaping gut acetogen populations. Acetogen enrichments from these animals presented good capacities to use hydrogen, with acetate as the major end product. Minor propionate, butyrate, and isovalerate were also produced. During 48 h of incubation, acetogen enrichments from horse consumed 4.75 moles of H2 to every 1 mole of acetate—significantly lower than rabbits, cows, and sheep (5.17, 5.53, and 5.23 moles, respectively) (p < 0.05)—and produced significantly more butyrate (p < 0.05). Enrichments from cows and sheep produced significantly higher amounts of propionate when compared to rabbits or horses (p < 0.05); enrichments from sheep produced the highest amounts of isovalerate (p < 0.05). These short chain fatty acids are important precursors for the synthesis of biofuel products, suggesting that gut contents of herbivores may be promising sources for harvesting functional acetogens for biofuel production. -
Hydrostatic Pressure Helps to Cultivate an Original Anaerobic Bacterium from the Atlantis Massif Subseafloor (IODP Expedition 357): Petrocella Atlantisensis Gen
fmicb-10-01497 July 16, 2019 Time: 16:31 # 1 ORIGINAL RESEARCH published: 16 July 2019 doi: 10.3389/fmicb.2019.01497 Hydrostatic Pressure Helps to Cultivate an Original Anaerobic Bacterium From the Atlantis Massif Subseafloor (IODP Expedition 357): Petrocella atlantisensis gen. nov. sp. nov. Marianne Quéméneur1, Gaël Erauso1, Eléonore Frouin1, Emna Zeghal1, Céline Vandecasteele2, Bernard Ollivier1, Christian Tamburini1, Marc Garel1, Bénédicte Ménez3 and Anne Postec1* Edited by: 1 Aix-Marseille Université, Université de Toulon, CNRS, IRD, MIO UM110, Marseille, France, 2 INRA, US 1426, GeT-PlaGe, Isabelle Daniel, Genotoul, Castanet-Tolosan, France, 3 Université de Paris, Institut de Physique du Globe de Paris, CNRS UMR 7154, Paris, Université Claude Bernard Lyon 1, France France Reviewed by: Rock-hosted subseafloor habitats are very challenging for life, and current knowledge Ida Helene Steen, University of Bergen, Norway about microorganisms inhabiting such lithic environments is still limited. This study Lotta Purkamo, explored the cultivable microbial diversity in anaerobic enrichment cultures from cores Geological Survey of Finland, Finland recovered during the International Ocean Discovery Program (IODP) Expedition 357 from *Correspondence: ◦ Anne Postec the Atlantis Massif (Mid-Atlantic Ridge, 30 N). 16S rRNA gene survey of enrichment ◦ [email protected] cultures grown at 10–25 C and pH 8.5 showed that Firmicutes and Proteobacteria were generally dominant. However, cultivable microbial diversity significantly differed Specialty section: This article was submitted to depending on incubation at atmospheric pressure (0.1 MPa), or hydrostatic pressures Extreme Microbiology, (HP) mimicking the in situ pressure conditions (8.2 or 14.0 MPa). An original, strictly a section of the journal anaerobic bacterium designated 70B-AT was isolated from core M0070C-3R1 (1150 Frontiers in Microbiology meter below sea level; 3.5 m below seafloor) only from cultures performed at 14.0 MPa. -
The Carbon-Isotope Record of the Sub-Seafloor Biosphere
geosciences Review The Carbon-Isotope Record of the Sub-Seafloor Biosphere Patrick Meister 1,* and Carolina Reyes 2 1 Department of Geodynamics and Sedimentology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria 2 Department of Environmental Geosciences, University of Vienna, Althanstr. 14, 1090 Vienna, Austria; [email protected] * Correspondence: [email protected] Received: 13 November 2019; Accepted: 29 November 2019; Published: 5 December 2019 Abstract: Sub-seafloor microbial environments exhibit large carbon-isotope fractionation effects as a result of microbial enzymatic reactions. Isotopically light, dissolved inorganic carbon (DIC) derived from organic carbon is commonly released into the interstitial water due to microbial dissimilatory processes prevailing in the sub-surface biosphere. Much stronger carbon-isotope fractionation occurs, however, during methanogenesis, whereby methane is depleted in 13C and, by mass balance, DIC is enriched in 13C, such that isotopic distributions are predominantly influenced by microbial metabolisms involving methane. Methane metabolisms are essentially mediated through a single enzymatic pathway in both Archaea and Bacteria, the Wood–Ljungdahl (WL) pathway, but it remains unclear where in the pathway carbon-isotope fractionation occurs. While it is generally assumed that fractionation arises from kinetic effects of enzymatic reactions, it has recently been suggested that partial carbon-isotope equilibration occurs within the pathway of anaerobic methane oxidation. Equilibrium fractionation might also occur during methanogenesis, as the isotopic difference between DIC and methane is commonly on the order of 75%, which is near the thermodynamic equilibrium. The isotopic signature in DIC and methane highly varies in marine porewaters, reflecting the distribution of different microbial metabolisms contributing to DIC. -
Biodegradation Treatment of Petrochemical Wastewaters
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA VEGETAL Biodegradation treatment of petrochemical wastewaters Catarina Isabel Nunes Alexandre Dissertação Mestrado em Microbiologia Aplicada Orientadores Doutora Sandra Sanches Professora Doutora Lélia Chambel 2015 Biodegradation treatment of petrochemical wastewaters Catarina Isabel Nunes Alexandre 2015 This thesis was fully performed at the Institute of Experimental and Technologic Biology (IBET) of Instituto de Tecnologia Química e Bioquímica (ITQB) under the direct supervision of Drª Sandra Sanches in the scope of the Master in Applied Microbiology of the Faculty of Sciences of the University of Lisbon. Prof. Drª Lélia Chambel was the internal designated supervisor in the scope of the Master in Applied Microbiology of the Faculty of Sciences of the University of Lisbon. Agradecimentos Gostaria de agradecer a todas as pessoas que estiveram directamente ou indirectamente envolvidas na execução da minha tese de mestrado, pois sem eles a sua realização não teria sido possível. Queria começar por agradecer à Doutora Sandra Sanches, que se demonstrou sempre disponível para esclarecer dúvidas quando precisei, e que fez questão de me ensinar de forma rigorosa e exigente. À Doutora Maria Teresa Crespo, que assim que lhe pedi para me orientar me disse que sim imediatamente, fez questão de me treinar em vários contextos e sempre estimulou o meu envolvimento nas rotinas do laboratório. À Professora Doutora Lélia Chambel, que sempre me esclareceu dúvidas sobre processos burocráticos, me deu conselhos quando eu mais precisei e que me apoiou durante toda a minha tese. Queria também agradecer à Doutora Dulce Brito, que sempre se mostrou disponível para ajudar quando a nossa equipa mais precisava dela, e sempre me ajudou a realizar as tarefas mais básicas do meu trabalho até eu ter ganho a minha autonomia no laboratório. -
Acetogenesis in the Energy-Starved Deep Biosphere – a Paradox?
HYPOTHESIS AND THEORY ARTICLE published: 13 January 2012 doi: 10.3389/fmicb.2011.00284 Acetogenesis in the energy-starved deep biosphere – a paradox? Mark Alexander Lever* Department of Bioscience, Center for Geomicrobiology, Aarhus University, Aarhus, Denmark Edited by: Under anoxic conditions in sediments, acetogens are often thought to be outcompeted Andreas Teske, University of North by microorganisms performing energetically more favorable metabolic pathways, such as Carolina at Chapel Hill, USA sulfate reduction or methanogenesis. Recent evidence from deep subseafloor sediments Reviewed by: Matthew Schrenk, East Carolina suggesting acetogenesis in the presence of sulfate reduction and methanogenesis has University, USA called this notion into question, however. Here I argue that acetogens can successfully Aharon Oren, The Hebrew University coexist with sulfate reducers and methanogens for multiple reasons. These include (1) of Jerusalem, Israel substantial energy yields from most acetogenesis reactions across the wide range of *Correspondence: conditions encountered in the subseafloor, (2) wide substrate spectra that enable niche Mark Alexander Lever , Department of Bioscience, Center for differentiation by use of different substrates and/or pooling of energy from a broad range Geomicrobiology, Aarhus University, of energy substrates, (3) reduced energetic cost of biosynthesis among acetogens due Ny Munkegade 114, bng 1535-1540, to use of the reductive acetyl CoA pathway for both energy production and biosynthesis DK-8000 Århus C, Denmark. coupled with the ability to use many organic precursors to produce the key intermediate e-mail: [email protected] acetyl CoA. This leads to the general conclusion that, beside Gibbs free energy yields, variables such as metabolic strategy and energetic cost of biosynthesis need to be taken into account to understand microbial survival in the energy-depleted deep biosphere. -
Biosolids Technology Fact Sheet, Multi-Stage Anaerobic Digestion
Biosolids Technology Fact Sheet Multi-Stage Anaerobic Digestion DESCRIPTION the organisms that perform the methane forma- tion step (the methanogenic bacteria). The Anaerobic digestion is a naturally occurring bio- acidogenic bacteria are also less sensitive than logical process in which large numbers of the methanogenic bacteria to changes in organic anaerobic bacteria convert organic matter into strength and composition in the incoming feed methane and carbon dioxide (a mixture called stream. Therefore, although many wastewater biogas) in the absence of air. It is a widely used treatment plants have traditionally performed biological process for treating wastewater solids. anaerobic digestion processes in a single tank (in This process stabilizes the organic matter in a process called single-stage anaerobic digestion) wastewater solids, reduces pathogens and odors, at a constant temperature, some facilities have and reduces the total solids/sludge quantity by separated the process into multiple stages, by converting part of the volatile solids (VS) frac- physically separating the stages or by controlling tion to biogas. Anaerobic digestion results in a the process to separate the stages in time, or product that contains stabilized solids, as well as both. This approach allows the facilities to opti- some available forms of nutrients such as am- mize the various stages of the anaerobic monia-nitrogen. digestion process to meet their needs. The process of anaerobic digestion can be divided The standard multi-stage anaerobic digestion into three separate steps, each of which is per- system is a two-stage acid/gas (AG)-phased formed by a different group of microorganisms: system, in which the acid-forming steps (hy- • Hydrolysis, during which the proteins, cellu- drolysis and volatile acid fermentation) are lose, lipids, and other complex organics are physically separated from the gas-forming step broken down into smaller molecules and be- (methane formation) by being conducted in sepa- come soluble by utilizing water to split the rate digestion tanks. -
Acetogenesis and the Wood–Ljungdahl Pathway of CO2 Fixation
Biochimica et Biophysica Acta 1784 (2008) 1873–1898 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbapap Review Acetogenesis and the Wood–Ljungdahl pathway of CO2 fixation Stephen W. Ragsdale ⁎, Elizabeth Pierce Department of Biological Chemistry, MSRB III, 5301, 1150 W. Medical Center Drive, University of Michigan, Ann Arbor, MI 48109-0606, USA article info abstract Article history: Conceptually, the simplest way to synthesize an organic molecule is to construct it one carbon at a time. The Received 2 July 2008 Wood–Ljungdahl pathway of CO2 fixation involves this type of stepwise process. The biochemical events that Received in revised form 12 August 2008 underlie the condensation of two one-carbon units to form the two-carbon compound, acetate, have Accepted 13 August 2008 intrigued chemists, biochemists, and microbiologists for many decades. We begin this review with a Available online 27 August 2008 description of the biology of acetogenesis. Then, we provide a short history of the important discoveries that fi Keywords: have led to the identi cation of the key components and steps of this usual mechanism of CO and CO2 fi fl Acetogenesis xation. In this historical perspective, we have included re ections that hopefully will sketch the landscape Nickel of the controversies, hypotheses, and opinions that led to the key experiments and discoveries. We then Iron–sulfur describe the properties of the genes and enzymes involved in the pathway and conclude with a section Cobalamin describing some major questions that remain unanswered. Methanogenesis © 2008 Elsevier B.V. All rights reserved. -
Aquatic Microbial Ecology 79:177
Vol. 79: 177–195, 2017 AQUATIC MICROBIAL ECOLOGY Published online June 12 https://doi.org/10.3354/ame01826 Aquat Microb Ecol Contribution to AME Special 6 ‘SAME 14: progress and perspectives in aquatic microbial ecology’ OPENPEN ACCESSCCESS REVIEW Microbial community assembly in marine sediments Caitlin Petro**, Piotr Starnawski**, Andreas Schramm*, Kasper U. Kjeldsen Section for Microbiology and Center for Geomicrobiology, Department of Bioscience, Aarhus University, 8000 Aarhus C, Denmark ABSTRACT: Marine sediments are densely populated by diverse communities of archaea and bacteria, with intact cells detected kilometers below the seafloor. Analyses of microbial diversity in these unique environments have identified several dominant taxa that comprise a significant portion of the community in geographically and environmentally disparate locations. While the distributions of these populations are well documented, there is significantly less information describing the means by which such specialized communities assemble within the sediment col- umn. Here, we review known patterns of subsurface microbial community composition and per- form a meta-analysis of publicly available 16S rRNA gene datasets collected from 9 locations at depths from 1 cm to >2 km below the surface. All data are discussed in relation to the 4 major pro- cesses of microbial community assembly: diversification, dispersal, selection, and drift. Microbial diversity in the subsurface decreases with depth on a global scale. The transition from the seafloor to the deep subsurface biosphere is marked by a filtering of populations from the surface that leaves only a subset of taxa to populate the deeper sediment zones, indicating that selection is a main mechanism of community assembly. The physiological underpinnings for the success of these persisting taxa are largely unknown, as the majority of them lack cultured representatives. -
Acetogenesis from H2 Plus CO2 and Nitrogen Fixation by an Endosymbiotic Spirochete of a Termite-Gut Cellulolytic Protist
Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist Moriya Ohkumaa,b,1, Satoko Nodaa,c, Satoshi Hattorid, Toshiya Iidaa, Masahiro Yukib, David Starnsa,e, Jun-ichi Inouea, Alistair C. Darbye, and Yuichi Hongoha,f aJapan Collection of Microorganisms/Microbe Division, RIKEN BioResource Center, and bBiomass Research Platform Team, RIKEN Biomass Engineering Program Cooperation Division, RIKEN Center for Sustainable Resource Science, Ibaraki 305-0074, Japan; cInterdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi 400-8511, Japan; dDepartment of Food, Life, and Environmental Sciences, Yamagata University, Yamagata 997-8555, Japan; eInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom; and fDepartment of Biological Sciences, Tokyo Institute of Technology, Tokyo 152-8550, Japan Edited by Patrick J. Keeling, University of British Columbia, Vancouver, Canada, and accepted by the Editorial Board April 16, 2015 (received for review December 15, 2014) Symbiotic associations of cellulolytic eukaryotic protists and di- cellulose digestion. The protists phagocytose ingested wood verse bacteria are common in the gut microbial communities of particles and almost completely decompose and ferment the termites. Besides cellulose degradation by the gut protists, re- cellulose to produce acetate, H2, and CO2 (6, 8). The host ter- ductive acetogenesis from H2 plus CO2 and nitrogen fixation by mite uses the produced acetate as a major carbon and energy ’ gut bacteria play crucial roles in the host termites nutrition by source. The produced H2 is a key metabolic intermediate that contributing to the energy demand of termites and supplying nitro- fuels many bacteria in the gut (9). -
Determining the Culturability of the Rumen Bacterial Microbiome
bs_bs_banner Determining the culturability of the rumen bacterial microbiome Christopher J. Creevey,1,2 William J. Kelly,3,4* list of cultured rumen isolates that are representative Gemma Henderson3,4 and Sinead C. Leahy3,4 of abundant, novel and core bacterial species in the 1Animal and Bioscience Research Department, Animal rumen. In addition, we have identified taxa, particu- and Grassland Research and Innovation Centre, larly within the phylum Bacteroidetes, where further Teagasc, Grange, Dunsany, Co. Meath, Ireland. cultivation efforts are clearly required. 2Institute of Biological, Environmental and Rural This information is being used to guide the isola- Sciences, Aberystwyth University, Aberystwyth, tion efforts and selection of bacteria from the rumen Ceredigion, UK. microbiota for sequencing through the Hungate1000. 3Grasslands Research Centre, AgResearch Limited, Palmerston North, New Zealand. Introduction 4New Zealand Agricultural Greenhouse Gas Research Ruminants have evolved a symbiotic relationship with a Centre, Palmerston North, New Zealand. complex microbiome consisting of bacteria, archaea, fungi, protozoa, and viruses located in their fore-stomach Summary (reticulorumen) that allows these animals to utilize the lignocellulose component of plant material as their main The goal of the Hungate1000 project is to generate a energy source. The microbial degradation of lignocellu- reference set of rumen microbial genome sequences. lose, and fermentation of the released soluble sugars, Toward this goal we have carried out a meta-analysis produces short-chain fatty acids that are absorbed across using information from culture collections, scientific the rumen epithelium and utilized by the ruminant for literature, and the NCBI and RDP databases and growth, while the microbial cells pass from the rumen to linked this with a comparative study of several rumen the digestive tract where they become the main source of 16S rRNA gene-based surveys. -
Bio-Produced Acetic Acid: a Review Chemical Engineering
PP Periodica Polytechnica Bio-produced Acetic Acid: A Review Chemical Engineering 62(3), pp. 245-256, 2018 https://doi.org/10.3311/PPch.11004 Aladár Vidra1, Áron Németh1* Creative Commons Attribution b review article Received 08 May 2017; accepted after revision 05 October 2017 Abstract 1 Introduction Acetic acid is an important platform chemical. It is mainly Acetic acid is an important platform chemical and tradition- produced synthetically and only 10 percent of the world pro- ally used as a food preservative. It is a clear, colorless, cor- duction is manufactured by bacterial fermentation for making rosive carboxylic acid with sour taste and pungent smell [1]. vinegar. Several microorganisms can produce acetic acid and Acetic acid is produced both synthetically and by bacterial a part of them can incorporate CO2 during the production. fermentation. Synthetic production mainly depends on petro- In this review we summarized the microbial acetic acid path- leum-derived stocks such as methanol, acetaldehyde, butane or ways, and the used processes for vinegar production further- ethylene. Today the biological route accounts for only about more the optional acetic acid recovery operations to establish 10 percent of world production [2]. It remains important for a complete possible biotechnological acetic acid production. vinegar production, because many of the world food purity laws stipulate that vinegar used in foods must be of biological Keywords origin. Vinegar which is mainly a 4-6% diluted acetic acid solu- acetic acid, vinegar, acetic acid bacteria, acetogen, tion is directly used as a flavoring agent for foods and also as Wood-Ljungdahl pathway, Orleans method, Generator food preservatives [3]. -
Inoculum Source Determines Acetate and Lactate Production During Anaerobic Digestion of Sewage Sludge and Food Waste
bioengineering Article Inoculum Source Determines Acetate and Lactate Production during Anaerobic Digestion of Sewage Sludge and Food Waste Jan Moestedt 1,2, Maria Westerholm 3, Simon Isaksson 3 and Anna Schnürer 1,3,* 1 Department of Thematic Studies–Environmental Change, Linköping University, SE 581 83 Linköping, Sweden; [email protected] 2 Department R&D, Tekniska verken i Linköping AB, SE 581 15 Linköping, Sweden 3 Department of Molecular Sciences, Swedish University of Agricultural Sciences, BioCenter, SE 750 07 Uppsala, Sweden; [email protected] (M.W.); [email protected] (S.I.) * Correspondence: [email protected] Received: 15 November 2019; Accepted: 18 December 2019; Published: 23 December 2019 Abstract: Acetate production from food waste or sewage sludge was evaluated in four semi-continuous anaerobic digestion processes. To examine the importance of inoculum and substrate for acid production, two different inoculum sources (a wastewater treatment plant (WWTP) and a co-digestion plant treating food and industry waste) and two common substrates (sewage sludge and food waste) were used in process operations. The processes were evaluated with regard to the efficiency of hydrolysis, acidogenesis, acetogenesis, and methanogenesis and the microbial community structure was determined. Feeding sewage sludge led to mixed acid fermentation and low total acid yield, whereas feeding food waste resulted in the production of high acetate and lactate yields. Inoculum from WWTP with sewage sludge substrate resulted in maintained methane production, despite a low hydraulic retention time. For food waste, the process using inoculum from WWTP produced high levels of lactate (30 g/L) and acetate (10 g/L), while the process initiated with inoculum from the co-digestion plant had higher acetate (25 g/L) and lower lactate (15 g/L) levels.