Comparative Effects Ofdietary Nucleoside- Nucleotide Mixture And

Total Page:16

File Type:pdf, Size:1020Kb

Comparative Effects Ofdietary Nucleoside- Nucleotide Mixture And Gut 1996; 38: 531-537 531 Comparative effects of dietary nucleoside- nucleotide mixture and its components on endotoxin induced bacterial translocation and Gut: first published as 10.1136/gut.38.4.531 on 1 April 1996. Downloaded from small intestinal injury in protein deficient mice AA Adjei, K Yamauchi, Y C Chan, M Konishi, S Yamamoto Abstract nucleotides or cytidine provide a better Background-Nucleoside-nucleotide mix- response. ture has been shown to improve gut mor- (Gut 1996; 38: 531-537) phology and reduce the incidence of bacterial translocation in protein deficient Keywords: nucleosides, nucleotides, bacterial mice. translocation, protein deficiency, endotoxin. Aims-To compare the reparative effect of nucleoside-nucleotide mixture and their individual components on mainte- The gastrointestinal tract plays a primary part nance of gut integrity and bacterial trans- in the digestion and absorption of nutrients, location based on their differential but it is also essential as a barrier to enteric metabolism and utilisation. flora, preventing host invasion by micro-organ- Methods-ICR (CD-1) mice were ran- isms or bacterial endotoxins.1 2 Nevertheless, domised into eight groups of 10 animals recent data suggest that under certain clinical each and fed 20% casein diet (control), and experimental conditions, this intestinal protein free diet, or protein free diet barrier function seems to be impaired leading supplemented with 3 M cytidine, uridine, to the translocation of bacteria or endotoxin to thymidine, inosine, guanosine monophos- the mesenteric lymph nodes, spleen, liver, and phate, or nucleoside-nucleotide mixture bloodstream, initiating the septic process that for four weeks. On the fourth week, each perpetrates multiple organ failure.3 Some com- mouse was injected lipopolysaccharide mercially available parenteral (Aminosyn) and http://gut.bmj.com/ intraperitoneally (50 [ug/500 Al) and the enteral formulas (Osmolite) used for nutri- incidence of bacterial translocation, tional treatment of critically ill or immuno- caecal bacterial populations, and the ileal compromised patients fail to support gut histology, noted 48 hours later. mucosal structure or function. This occurs Results-The death rate in the control because the formulas do not contain gluta- group was 40%/o compared with 10% in the mine, fibre, or nucleic acid components, which nucleoside-nucleotide mixture and 20% are required for normal enterocyte growth or on September 25, 2021 by guest. Protected copyright. each in the individual components repair after an insult and during periods of groups, respectively. Bacterial trans- critical illness.4 location to the mesenteric lymph node There are a number of factors that partici- did occur in 100% of the surviving mice pate in the modulation of the renewal of the fed the control diet in comparison with absorptive epithelium and in the repair of the 44Gb (nucleoside-nucleotide), 50%/o (cyti- gut under abnormal conditions.5 Nitrogen dine), 75°/0 (thymidine), 750/o (uridine), containing substrates seem to be of great 63% (inosine), and 63% (guanosine importance for gut development. Dietary monophosphate). Histologically, the nucleotides have been described as improving damage to the gut was more distinct in growth in weanling rats fed a low protein the protein free diet group. Villous diet,6 and as stimulating the in vitro and in Department of Bacteriology height, crypt depth, and wall thickness in vivo growth of intestinal bifidobacteria.7 8 A A Adjei the nucleoside-nucleotide mixture group Oral supplementation of total parenteral mean (SEM) (5.01 (0.34); 0-87 (0.14); 0.33 nutrition with nucleoside-nucleotide mixture and Research Centre of Comprehensive (0.10)), were respectively, higher com- prevented the intestinal mucosal atrophic Medicine pared with the protein free diet (3.34 changes in the ileum of rats induced by total K Yamauchi (0.34); 0.61 (0.03); 0.18 (0.04)) group. In parenteral nutrition.9 Nucleoside supplemen- Y C Chan the M Konishi cytidine group, crypt depth (0.86) tation increased the rate of maturation and S Yamamoto (0.08)), and wall thickness (0.30 (0.002)) growth in the young rat, as determined by were higher. The same measurements in mass, RNA, DNA, and protein concentra- University of the the components groups tended to be tions and of brush border Ryukyus, Okinawa, activity enzymes.10 Japan higher than the protein free diet group. Nucleotide supplementation restored the bio- Caecal bacterial populations were, how- chemical indices of the small intestine at Correspondence to: Dr AA Adjei, Department of ever, similar in all groups. proximal and distal sites, and improved Bacteriology, University of Conclusions-These results suggest that intestinal changes after induction of chronic the Ryukyus, Nishihara, Okinawa 903-01, Japan. dietary nucleosides and nucleotides are diarrhoea.11-14 Dietary nucleotides are also Accepted for publication essential nutrients for intestinal repair; implicated in the maintenance of the 31 October 1995 and that a mixture of nucleosides and immune response.)5 16 Intraperitoneal or oral 532 Adjei, Yamauchi, Chan, Konishi, Yamamoto administration of nucleoside-nucleotide mix- were randomised into eight groups according ture improved gut morphology and reduced the to the dietary treatment. Each diet was started incidence of bacterial translocation in protein four weeks before the administration of endo- deficient mice.17 18 These substrates have been toxin, and was continued until the mice were on studied in normal humans under stress, and killed. On the fourth week the diet, mice Gut: first published as 10.1136/gut.38.4.531 on 1 April 1996. Downloaded from animal models." 1-4 19 Whereas much attention were intraperitoneally given lipopolysaccharide have been focused on the use of combinations (50 ,ug/500 gl) and killed by cervical disloca- of nucleosides, nucleotides or nucleic acids in tion 48 hours later, and the incidence of bacte- the improvement of gut integrity and function, rial translocation, caecal bacterial populations, one question that has not been considered con- and the damage to the intestine were investi- clusively is which components of nucleic acids, gated. nucleotides, nucleosides are effective. This question is of clinical significance because of the differential metabolism and utilisation of Endotoxin individual nucleotides and nucleosides, as Lipopolysaccharide (from Escherichia coli evidenced by some investigators.2022 To 026:B6, Wako Chemical, Tokyo, Japan) was answer this question, this study was designed to dissolved in pyrogen free saline to a final con- see the effect(s) of dietary nucleosides and centration of 50 ,ug/500 gl; 500 ,l was injected nucleotides on the incidence of endotoxin intraperitoneally into each animal used for the induced bacterial translocation, intestinal experiment. We used 50 ,ug lipopolysaccharide bacterial populations, and morphology of the because previous results showed that this dose gut in protein deficient mice and to evaluate the and timing did not cause death, yet resulted relative importance of nucleosides and in bacterial translocation in 100% of the nucleotides. We used protein deficient mice injected mice.17 18 Lipopolysaccharide was because protein deficiency is the most common used because it has been shown that protein cause of immunosuppression worldwide,23 malnutrition alone does not induce trans- and, in combination with endotoxin, results in location.24 deficiency of the gut and potentiates bacterial translocation.24 Diet The control mice were fed 20% casein diet Methods (nucleic acid free), and the remaining groups of mice were fed protein free diet, or protein Animals free diet supplemented with 3 M guanosine Specific pathogen free ICR (CD-1) mice were monophosphate (guanosine group), inosine http://gut.bmj.com/ obtained from Kyudo Breeding Laboratories (inosine group) (purines), cytidine (cytidine (Kumamoto, Japan) and used for the experi- group), uridine (uridine group), thymidine ment. Weight matched (29+±2 g) 8 week old (thymidine group) (pyrimidines), or a nucleo- female mice were kept in a constant tempera- side-nucleotide mixture (nucleosides-nucleo- ture (25±2°C) and humidity (50-700%) room tide group) per kg diet throughout the with a 12 hour light period from 0800 to investigation. The mixture (Otsuka Pharma- 2000. Animal care was in compliance with ceutical Factory, Tokushima, Japan) was on September 25, 2021 by guest. Protected copyright. applicable guidelines from the Ryukyus developed to compensate for a decrease in the University Policy on Animal Care and Use. intrinsic pools of purines and pyrimidines The mice were kept for one week before the because of the increased enzyme activity in onset of the experiment to acclimatise to our salvage under various abnormal conditions.25 laboratory conditions. During this period the It consisted of inosine (8 g/l), guanosine mice received normal non-purified diet monophosphate (12.2 g/l), cytidine (7.3 g/l), (Nihon Clear, Osaka, Japan). This standard uridine (5.5 g/l), and thymidine (1.8 g/l) at a mouse diet contains 25.5% protein and 4.3% molar ratio of 4:4:4:3:1. The diets were made fat by weight. isonitrogenous and isocaloric by adding an appropriate amount of glycine. Table I shows the composition of the diets. The nucleotide Study protocol content of the control diet and protein free After the period of acclimatisation, the mice diet was negligible as determined by high TABLE I Composition ofexperimental diets (g/kg) Protein Nucleoside- Guanosine Control free diet nucleotide Uridine Thymidine Cytidine Inosine monophosphate Casein 200 0 0 0 0 0 0 0 Glycine 9-6 9-6 0 0 0 0 0 0 Nucleic acid 0 0 6-5 5-5 5-5 5.5 6-0 9-2 Carbohydrate* 670 860-4 863-5 864-5 864-5 864-5 864 860-8 Corn oil 50 50 50 50 50 50 50 50 Mineral mixturet 50 50 50 50 50 50 50 50 Vitamin mixture* 10 10 10 10 10 10 10 10 Cellulose 20 20 20 20 20 20 20 20 *ay-corn starch:sucrose, 2:1 ratio.
Recommended publications
  • Stimulating Effects of Inosine, Uridine and Glutamine on the Tissue Distribution of Radioactive D-Leucine in Tumor Bearing Mice
    RADIOISOTOPES, 33, 7376 (1984) Note Stimulating Effects of Inosine, Uridine and Glutamine on the Tissue Distribution of Radioactive D-leucine in Tumor Bearing Mice Rensuke GOTO, Atsushi TAKEDA, Osamu TAMEMASA, James E. CHANEY* and George A. DIGENIS* Division of Radiobiochemistry and Radiopharmacology, Shizuoka College of Pharmacy 2-1, Oshika 2-chome, Shizuoka-shi 422, Japan * Division of Medicinal Chemistry and Pharmacognosy , College of Pharmacy, University of Kentucky Lexington, Kentucky 40506, U.S.A. Received September 16, 1983 This experiment was carried out in search for stimulators of the in vivo uptake of D- and L-leucine by tumor and pancreas for the possible application to 7-emitter labeled amino acids in nuclear medical diagnosis. Inosine, uridine, and glutamine which are stimulators of the in vitro incorporation of radioactive L-amino acids into some tumor cells significantly enhanced the uptake of D-leucine into the pancreas, while in Ehrlich solid tumor only a little if any in- crease was observed. Of the compounds tested inosine showed the highest stimulation of pan- creas uptake in the range of doses used, resulting in the best pancreas-to-liver concentration ratio, a factor of significant consideration for pancreas imaging. The uptake of L-leucine by the tumor and pancreas was little affected by these compounds. Key Words: inosine, uridine, glutamine, tissue distribution, radioactive D-leucine, tumor bearing mice, pancreas imaging cine, and L-alanine into Ehrlich or Krebs ascites 1. Introduction carcinoma cells resulting from treatment with High radioactivity uptake of some radioactive inosine, uridine, or glutamine. These findings D-amino acids by the tumor and pancreas of suggest that these compounds might bring about tumor-bearing animalsl' '2) or by the pancreas of the increased in vivo uptake of amino acids.
    [Show full text]
  • 2'-Deoxyguanosine Toxicity for B and Mature T Lymphoid Cell Lines Is Mediated by Guanine Ribonucleotide Accumulation
    2'-deoxyguanosine toxicity for B and mature T lymphoid cell lines is mediated by guanine ribonucleotide accumulation. Y Sidi, B S Mitchell J Clin Invest. 1984;74(5):1640-1648. https://doi.org/10.1172/JCI111580. Research Article Inherited deficiency of the enzyme purine nucleoside phosphorylase (PNP) results in selective and severe T lymphocyte depletion which is mediated by its substrate, 2'-deoxyguanosine. This observation provides a rationale for the use of PNP inhibitors as selective T cell immunosuppressive agents. We have studied the relative effects of the PNP inhibitor 8- aminoguanosine on the metabolism and growth of lymphoid cell lines of T and B cell origin. We have found that 2'- deoxyguanosine toxicity for T lymphoblasts is markedly potentiated by 8-aminoguanosine and is mediated by the accumulation of deoxyguanosine triphosphate. In contrast, the growth of T4+ mature T cell lines and B lymphoblast cell lines is inhibited by somewhat higher concentrations of 2'-deoxyguanosine (ID50 20 and 18 microM, respectively) in the presence of 8-aminoguanosine without an increase in deoxyguanosine triphosphate levels. Cytotoxicity correlates instead with a three- to fivefold increase in guanosine triphosphate (GTP) levels after 24 h. Accumulation of GTP and growth inhibition also result from exposure to guanosine, but not to guanine at equimolar concentrations. B lymphoblasts which are deficient in the purine salvage enzyme hypoxanthine guanine phosphoribosyltransferase are completely resistant to 2'-deoxyguanosine or guanosine concentrations up to 800 microM and do not demonstrate an increase in GTP levels. Growth inhibition and GTP accumulation are prevented by hypoxanthine or adenine, but not by 2'-deoxycytidine.
    [Show full text]
  • A New Crystal Form of Bovine Pancreatic Rnase a in Complex with 2
    protein structure communications Acta Crystallographica Section F Structural Biology A new crystal form of bovine pancreatic RNase A in 000 and Crystallization complex with 2 -deoxyguanosine- Communications 5000-monophosphate ISSN 1744-3091 Steven B. Larson,a John S. Day,a The structure of bovine pancreatic RNase A has been determined in complex Robert Cudneyb and Alexander with 20-deoxyguanosine-50-monophosphate (dGMP) at 1.33 A˚ resolution at McPhersona* room temperature in a previously unreported unit cell belonging to space group P31. There are two molecules of nucleotide per enzyme molecule, one of which aDepartment of Molecular Biology and lies in the active-site cleft in the productive binding mode, whilst the guanine Biochemistry, The University of California, base of the other dGMP occupies the pyrimidine-specific binding site in a Irvine, CA 92697-3900, USA, and bHampton nonproductive mode such that it forms hydrogen bonds to the phosphate group Research, Aliso Viejo, CA 92656-3317, USA of the first dGMP. This is the first RNase A structure containing a guanine base in the B2 binding site. Each dGMP molecule is involved in intermolecular interactions with adjacent RNase A molecules in the lattice and the two Correspondence e-mail: [email protected] nucleotides appear to direct the formation of the crystal lattice. Because GMP may be produced during degradation of RNA, this association could represent Received 19 June 2007 an inhibitor complex and thereby affect the observed enzyme kinetics. Accepted 9 August 2007 PDB Reference: RNase A–dGMP complex, 2qca, r2qcasf. 1. Introduction Bovine pancreatic ribonuclease (EC 3.1.27.5), commonly known as RNase A, has been extensively studied by physical-chemical approaches and by X-ray crystallography for nearly 75 years.
    [Show full text]
  • Inosine Binds to A3 Adenosine Receptors and Stimulates Mast Cell Degranulation
    Inosine binds to A3 adenosine receptors and stimulates mast cell degranulation. X Jin, … , B R Duling, J Linden J Clin Invest. 1997;100(11):2849-2857. https://doi.org/10.1172/JCI119833. Research Article We investigated the mechanism by which inosine, a metabolite of adenosine that accumulates to > 1 mM levels in ischemic tissues, triggers mast cell degranulation. Inosine was found to do the following: (a) compete for [125I]N6- aminobenzyladenosine binding to recombinant rat A3 adenosine receptors (A3AR) with an IC50 of 25+/-6 microM; (b) not bind to A1 or A2A ARs; (c) bind to newly identified A3ARs in guinea pig lung (IC50 = 15+/-4 microM); (d) lower cyclic AMP in HEK-293 cells expressing rat A3ARs (ED50 = 12+/-5 microM); (e) stimulate RBL-2H3 rat mast-like cell degranulation (ED50 = 2.3+/-0.9 microM); and (f) cause mast cell-dependent constriction of hamster cheek pouch arterioles that is attenuated by A3AR blockade. Inosine differs from adenosine in not activating A2AARs that dilate vascular smooth muscle and inhibit mast cell degranulation. The A3 selectivity of inosine may explain why it elicits a monophasic arteriolar constrictor response distinct from the multiphasic dilator/constrictor response to adenosine. Nucleoside accumulation and an increase in the ratio of inosine to adenosine may provide a physiologic stimulus for mast cell degranulation in ischemic or inflamed tissues. Find the latest version: https://jci.me/119833/pdf Inosine Binds to A3 Adenosine Receptors and Stimulates Mast Cell Degranulation Xiaowei Jin,* Rebecca K. Shepherd,‡ Brian R. Duling,‡ and Joel Linden‡§ *Department of Biochemistry, ‡Department of Molecular Physiology and Biological Physics, and §Department of Medicine, University of Virginia Health Sciences Center, Charlottesville, Virginia 22908 Abstract Mast cells are found in the lung where they release media- tors that constrict bronchiolar smooth muscle.
    [Show full text]
  • Inosine in Biology and Disease
    G C A T T A C G G C A T genes Review Inosine in Biology and Disease Sundaramoorthy Srinivasan 1, Adrian Gabriel Torres 1 and Lluís Ribas de Pouplana 1,2,* 1 Institute for Research in Biomedicine, Barcelona Institute of Science and Technology, 08028 Barcelona, Catalonia, Spain; [email protected] (S.S.); [email protected] (A.G.T.) 2 Catalan Institution for Research and Advanced Studies, 08010 Barcelona, Catalonia, Spain * Correspondence: [email protected]; Tel.: +34-934034868; Fax: +34-934034870 Abstract: The nucleoside inosine plays an important role in purine biosynthesis, gene translation, and modulation of the fate of RNAs. The editing of adenosine to inosine is a widespread post- transcriptional modification in transfer RNAs (tRNAs) and messenger RNAs (mRNAs). At the wobble position of tRNA anticodons, inosine profoundly modifies codon recognition, while in mRNA, inosines can modify the sequence of the translated polypeptide or modulate the stability, localization, and splicing of transcripts. Inosine is also found in non-coding and exogenous RNAs, where it plays key structural and functional roles. In addition, molecular inosine is an important secondary metabolite in purine metabolism that also acts as a molecular messenger in cell signaling pathways. Here, we review the functional roles of inosine in biology and their connections to human health. Keywords: inosine; deamination; adenosine deaminase acting on RNAs; RNA modification; translation Citation: Srinivasan, S.; Torres, A.G.; Ribas de Pouplana, L. Inosine in 1. Introduction Biology and Disease. Genes 2021, 12, 600. https://doi.org/10.3390/ Inosine was one of the first nucleobase modifications discovered in nucleic acids, genes12040600 having been identified in 1965 as a component of the first sequenced transfer RNA (tRNA), tRNAAla [1].
    [Show full text]
  • Central Nervous System Dysfunction and Erythrocyte Guanosine Triphosphate Depletion in Purine Nucleoside Phosphorylase Deficiency
    Arch Dis Child: first published as 10.1136/adc.62.4.385 on 1 April 1987. Downloaded from Archives of Disease in Childhood, 1987, 62, 385-391 Central nervous system dysfunction and erythrocyte guanosine triphosphate depletion in purine nucleoside phosphorylase deficiency H A SIMMONDS, L D FAIRBANKS, G S MORRIS, G MORGAN, A R WATSON, P TIMMS, AND B SINGH Purine Laboratory, Guy's Hospital, London, Department of Immunology, Institute of Child Health, London, Department of Paediatrics, City Hospital, Nottingham, Department of Paediatrics and Chemical Pathology, National Guard King Khalid Hospital, Jeddah, Saudi Arabia SUMMARY Developmental retardation was a prominent clinical feature in six infants from three kindreds deficient in the enzyme purine nucleoside phosphorylase (PNP) and was present before development of T cell immunodeficiency. Guanosine triphosphate (GTP) depletion was noted in the erythrocytes of all surviving homozygotes and was of equivalent magnitude to that found in the Lesch-Nyhan syndrome (complete hypoxanthine-guanine phosphoribosyltransferase (HGPRT) deficiency). The similarity between the neurological complications in both disorders that the two major clinical consequences of complete PNP deficiency have differing indicates copyright. aetiologies: (1) neurological effects resulting from deficiency of the PNP enzyme products, which are the substrates for HGPRT, leading to functional deficiency of this enzyme. (2) immunodeficiency caused by accumulation of the PNP enzyme substrates, one of which, deoxyguanosine, is toxic to T cells. These studies show the need to consider PNP deficiency (suggested by the finding of hypouricaemia) in patients with neurological dysfunction, as well as in T cell immunodeficiency. http://adc.bmj.com/ They suggest an important role for GTP in normal central nervous system function.
    [Show full text]
  • High-Throughput Profiling of Nucleotides and Nucleotide Sugars
    Journal of Biotechnology 229 (2016) 3–12 Contents lists available at ScienceDirect Journal of Biotechnology j ournal homepage: www.elsevier.com/locate/jbiotec High-throughput profiling of nucleotides and nucleotide sugars to evaluate their impact on antibody N-glycosylation a,1 b,1 a c Thomas K. Villiger , Robert F. Steinhoff , Marija Ivarsson , Thomas Solacroup , c c b b b Matthieu Stettler , Hervé Broly , Jasmin Krismer , Martin Pabst , Renato Zenobi , a a,d,∗ Massimo Morbidelli , Miroslav Soos a Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, CH- 8093 Zurich, Switzerland b Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, CH-8093 Zurich, Switzerland c Merck Serono SA, Corsier-sur-Vevey, Biotech Process Sciences, ZI B, CH-1809 Fenil-sur-Corsier, Switzerland d Department of Chemical Engineering, University of Chemistry and Technology, Technicka 5, 166 28 Prague, Czech Republic a r t i c l e i n f o a b s t r a c t Article history: Recent advances in miniaturized cell culture systems have facilitated the screening of media additives on Received 5 October 2015 productivity and protein quality attributes of mammalian cell cultures. However, intracellular compo- Received in revised form 16 April 2016 nents are not routinely measured due to the limited throughput of available analytical techniques. In this Accepted 20 April 2016 work, time profiling of intracellular nucleotides and nucleotide sugars of CHO-S cell fed-batch processes Available online 27 April 2016 in a micro-scale bioreactor system was carried out using a recently developed high-throughput method based on matrix-assisted laser desorption/ionization (MALDI) time-of-flight mass spectrometry (TOF- Keywords: MS).
    [Show full text]
  • 82119265.Pdf
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biophysical Journal: Biophysical Letters Electrocatalytic Oxidation of Guanine, Guanosine, and Guanosine Monophosphate Hong Xie,*y Daiwen Yang,y Adam Heller,z and Zhiqiang Gao*§ *Institute of Bioengineering and Nanotechnology, Singapore 138669; yDepartment of Chemistry, National University of Singapore, Singapore 117543; zDepartment of Chemical Engineering, The University of Texas, Austin, Texas 78712 USA; and §Institute of Microelectronics, Singapore 117685 ABSTRACT The electrochemical behavior of guanine, guanosine, and guanosine monophosphate (GMP) at redox polymer film modified indium tin oxide electrodes is examined by voltammetry and redox titration. Utilizing the redox polymer-coated electrodes as indicator electrodes, a new method for measuring the oxidation potentials, based on monitoring their catalytic oxidation by different redox polymer coated electrodes at different pH, was proposed in this work. The oxidation potentials of 0.81 V and 1.02 V versus normal hydrogen electrode were determined for guanine and guanosine/GMP under physiological conditions, the lowest oxidation potentials ever reported, to our knowledge. Received for publication 6 December 2006 and in final form 10 January 2007. Address reprint requests and inquiries to Zhiqiang Gao, Tel.: 65-67705928; Fax: 65-67780136; Email: [email protected]. The first to oxidize the base of DNA is guanine, oxidized in aqueous saline solutions, by monitoring their catalytic either directly or through hole transfer along the DNA p-stack oxidation currents. At the physiological pH of 7.4, guanine 21 to the radical (1). Its oxidation has been extensively studied electrooxidation is first observed on a Ru(bpy-Me)2 -grafted in the context of DNA damage, associated with mutation redox polymer catalyst-modified indium tin oxide (ITO) elec- and aging (2,3).
    [Show full text]
  • Abiotic Synthesis of Purine and Pyrimidine Ribonucleosides in Aqueous Microdroplets
    Abiotic synthesis of purine and pyrimidine ribonucleosides in aqueous microdroplets Inho Nama,b, Hong Gil Nama,c,1, and Richard N. Zareb,1 aCenter for Plant Aging Research, Institute for Basic Science, Daegu 42988, Republic of Korea; bDepartment of Chemistry, Stanford University, Stanford, CA 94305; and cDepartment of New Biology, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 42988, Republic of Korea Contributed by Richard N. Zare, November 27, 2017 (sent for review October 24, 2017; reviewed by Bengt J. F. Nordén and Veronica Vaida) Aqueous microdroplets (<1.3 μm in diameter on average) containing In a recent study, we showed a synthetic pathway for the 15 mM D-ribose, 15 mM phosphoric acid, and 5 mM of a nucleobase formation of Rib-1-P using aqueous, high–surface-area micro- (uracil, adenine, cytosine, or hypoxanthine) are electrosprayed from a droplets. This surface or near-surface reaction circumvents the capillary at +5 kV into a mass spectrometer at room temperature and fundamental thermodynamic problem of the condensation re- 2+ 1 atm pressure with 3 mM divalent magnesium ion (Mg )asacat- action (12). It has been suggested that the air–water interface alyst. Mass spectra show the formation of ribonucleosides that com- provides a favorable environment for the prebiotic synthesis of prise a four-letter alphabet of RNA with a yield of 2.5% of uridine (U), biomolecules (12–17). Using the Rib-1-P made in the above 2.5% of adenosine (A), 0.7% of cytidine (C), and 1.7% of inosine (I) during the flight time of ∼50 μs.
    [Show full text]
  • Guanosine-Based Nucleotides, the Sons of a Lesser God in the Purinergic Signal Scenario of Excitable Tissues
    International Journal of Molecular Sciences Review Guanosine-Based Nucleotides, the Sons of a Lesser God in the Purinergic Signal Scenario of Excitable Tissues 1,2, 2,3, 1,2 1,2, Rosa Mancinelli y, Giorgio Fanò-Illic y, Tiziana Pietrangelo and Stefania Fulle * 1 Department of Neuroscience Imaging and Clinical Sciences, University “G. d’Annunzio” of Chieti-Pescara, 66100 Chieti, Italy; [email protected] (R.M.); [email protected] (T.P.) 2 Interuniversity Institute of Miology (IIM), 66100 Chieti, Italy; [email protected] 3 Libera Università di Alcatraz, Santa Cristina di Gubbio, 06024 Gubbio, Italy * Correspondence: [email protected] Both authors contributed equally to this work. y Received: 30 January 2020; Accepted: 25 February 2020; Published: 26 February 2020 Abstract: Purines are nitrogen compounds consisting mainly of a nitrogen base of adenine (ABP) or guanine (GBP) and their derivatives: nucleosides (nitrogen bases plus ribose) and nucleotides (nitrogen bases plus ribose and phosphate). These compounds are very common in nature, especially in a phosphorylated form. There is increasing evidence that purines are involved in the development of different organs such as the heart, skeletal muscle and brain. When brain development is complete, some purinergic mechanisms may be silenced, but may be reactivated in the adult brain/muscle, suggesting a role for purines in regeneration and self-repair. Thus, it is possible that guanosine-50-triphosphate (GTP) also acts as regulator during the adult phase. However, regarding GBP, no specific receptor has been cloned for GTP or its metabolites, although specific binding sites with distinct GTP affinity characteristics have been found in both muscle and neural cell lines.
    [Show full text]
  • The Evolutionary Diversity of Uracil DNA Glycosylase Superfamily
    Clemson University TigerPrints All Dissertations Dissertations December 2017 The Evolutionary Diversity of Uracil DNA Glycosylase Superfamily Jing Li Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_dissertations Recommended Citation Li, Jing, "The Evolutionary Diversity of Uracil DNA Glycosylase Superfamily" (2017). All Dissertations. 2546. https://tigerprints.clemson.edu/all_dissertations/2546 This Dissertation is brought to you for free and open access by the Dissertations at TigerPrints. It has been accepted for inclusion in All Dissertations by an authorized administrator of TigerPrints. For more information, please contact [email protected]. THE EVOLUTIONARY DIVERSITY OF URACIL DNA GLYCOSYLASE SUPERFAMILY A Dissertation Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy Biochemistry and Molecular Biology by Jing Li December 2017 Accepted by: Dr. Weiguo Cao, Committee Chair Dr. Alex Feltus Dr. Cheryl Ingram-Smith Dr. Jeremy Tzeng ABSTRACT Uracil DNA glycosylase (UDG) is a crucial member in the base excision (BER) pathway that is able to specially recognize and cleave the deaminated DNA bases, including uracil (U), hypoxanthine (inosine, I), xanthine (X) and oxanine (O). Currently, based on the sequence similarity of 3 functional motifs, the UDG superfamily is divided into 6 families. Each family has evolved distinct substrate specificity and properties. In this thesis, I broadened the UDG superfamily by characterization of three new groups of enzymes. In chapter 2, we identified a new subgroup of enzyme in family 3 SMUG1 from Listeria Innocua. This newly found SMUG1-like enzyme has distinct catalytic residues and exhibits strong preference on single-stranded DNA substrates.
    [Show full text]
  • Inosine Assay Kit
    Product Manual Inosine Assay Kit Catalog Number MET-5092 100 assays FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Inosine is a nucleoside that is created when a ribose ring attaches to hypoxanthine through a β-N9- glycosidic bond. In the DNA synthesis pathway, adenine is first modified to form adenosine or inosine monophosphate (IMP) Next, either form is converted into inosine which can form base pairs with adenine (A), cytosine (C), and uracil (U). Inosine is most often found in tRNAs and is important for faithful translation of the genetic code in wobble base pairs. A better understanding of inosine metabolism has led to immunotherapy advances in recent years. Inosine monophosphate is oxidized by inosine monophosphate dehydrogenase to create xanthosine monophosphate, an important precursor in purine metabolism. Mycophenolate mofetil is a drug that acts as an inhibitor of inosine monophosphate dehydrogenase and is used in the treatment of a number of autoimmune diseases including granulomatosis with polyangiitis. In addition inosine has been demonstrated to have neuroprotective properties. It has been suggested for administration in both spinal cord injury and after stroke since it enhances the rewiring of axonal connections. Inosine may also benefit multiple sclerosis (MS) patients since ingestion leads to conversion to uric acid that is thought to be a natural antioxidant and a peroxynitrite scavenger. Inosine treatment of Parkinson’s disease patients has been shown to slow progression of the disease in clinical trials. Cell Biolabs’ Inosine Assay Kit is a simple fluorometric assay that measures the amount of total inosine present in biological samples in a 96-well microtiter plate format.
    [Show full text]