Cortical Organization: Neuroanatomical Approaches
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Raav-Based Retrograde Trans-Synaptic Labeling, Expression and Perturbation
bioRxiv preprint doi: https://doi.org/10.1101/537928; this version posted February 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. rAAV-based retrograde trans-synaptic tracing retroLEAP: rAAV-based retrograde trans-synaptic labeling, expression and perturbation Janine K Reinert1,#,* & Ivo Sonntag1,#,*, Hannah Sonntag2, Rolf Sprengel2, Patric Pelzer1, 1 1 1 Sascha Lessle , Michaela Kaiser , Thomas Kuner 1 Department Functional Neuroanatomy, Institute for Anatomy and Cell Biology, Heidelberg University, Heidelberg, Germany 2 Max Planck Research Group at the Institute for Anatomy and Cell Biology, at Heidelberg University, Heidelberg, Germany #These authors contributed equally to this work * Correspondence: Janine K Reinert: [email protected] Ivo Sonntag: [email protected] 1 out of 11 bioRxiv preprint doi: https://doi.org/10.1101/537928; this version posted February 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. rAAV-based retrograde trans-synaptic tracing Abstract Identifying and manipulating synaptically connected neurons across brain regions remains a core challenge in understanding complex nervous systems. RetroLEAP is a novel approach for retrograde trans-synaptic Labelling, Expression And Perturbation. GFP-dependent recombinase (Flp-DOG) detects trans-synaptic transfer of GFP-tetanus toxin heavy chain fusion protein (GFP-TTC) and activates expression of any gene of interest in synaptically connected cells. RetroLEAP overcomes existing limitations, is non-toxic, highly flexible, efficient, sensitive and easy to implement. Keywords: trans-synaptic, tracing, TTC, Cre-dependent, GFP-dependent flippase. -
High-Resolution Data-Driven Model of the Mouse Connectome
RESEARCH High-resolution data-driven model of the mouse connectome Joseph E. Knox1,2, Kameron Decker Harris 2,3, Nile Graddis1, Jennifer D. Whitesell 1, Hongkui Zeng 1, Julie A. Harris1, Eric Shea-Brown 1,2, and Stefan Mihalas 1,2 1Allen Institute for Brain Science, Seattle, Washington, USA 2Applied Mathematics, University of Washington, Seattle, Washington, USA 3Computer Science and Engineering, University of Washington, Seattle, Washington, USA Keywords: Connectome, Whole-brain, Mouse an open access journal ABSTRACT Knowledge of mesoscopic brain connectivity is important for understanding inter- and intraregion information processing. Models of structural connectivity are typically constructed and analyzed with the assumption that regions are homogeneous. We instead use the Allen Mouse Brain Connectivity Atlas to construct a model of whole-brain connectivity at the scale of 100 µm voxels. The data consist of 428 anterograde tracing experiments in wild type C57BL/6J mice, mapping fluorescently labeled neuronal projections brain-wide. Inferring spatial connectivity with this dataset is underdetermined, since the approximately 2 × 105 source voxels outnumber the number of experiments. Citation: Knox, J. E., Harris, K. D., To address this issue, we assume that connection patterns and strengths vary smoothly Graddis, N., Whitesell, J. D., Zeng, H., Harris, J. A., Shea-Brown, E., & across major brain divisions. We model the connectivity at each voxel as a radial basis Mihalas, S. (2019). High-resolution data-driven model of the mouse kernel-weighted average of the projection patterns of nearby injections. The voxel model connectome. Network Neuroscience, outperforms a previous regional model in predicting held-out experiments and compared 3(1), 217–236. -
Hypothesis-Driven Structural Connectivity Analysis Supports Network Over Hierarchical Model of Brain Architecture
Hypothesis-driven structural connectivity analysis supports network over hierarchical model of brain architecture Richard H. Thompson and Larry W. Swanson1 Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089 Contributed by Larry W. Swanson, June 30, 2010 (sent for review May 14, 2010) The brain is usually described as hierarchically organized, although (9) and a massive input from the SUBv (10). Only two major an alternative network model has been proposed. To help distin- brainstem inputs were identified: the dorsal raphé (DR), the guish between these two fundamentally different structure-function presumptive source of ACBdmt serotonin (11), and the inter- hypotheses, we developed an experimental circuit-tracing strategy fascicular nucleus (IF), the presumptive source of ACBdmt do- that can be applied to any starting point in the nervous system and pamine (12) that is medial to the expected ventral tegmental area then systematically expanded, and applied it to a previously obscure (VTA) itself (13). Thus, the ACBdmt receives direct inputs from dorsomedial corner of the nucleus accumbens identified functionally three massively interconnected cerebral regions implicated in as a “hedonic hot spot.” A highly topographically organized set of stress and depression, as well as restricted brainstem sites pro- connections involving expected and unexpected gray matter regions viding dopaminergic and serotonergic terminals. was identified that prominently features regions associated with Only one ACBdmt axonal output was labeled with PHAL (Fig. appetite, stress, and clinical depression. These connections are 1A; the filled purple area is a representative injection site): a arranged as a longitudinal series of circuits (closed loops). Thus, the descending pathway through the medial forebrain bundle with two results do not support a rigidly hierarchical model of nervous system clear terminal fields. -
Connectional Architecture of a Mouse Hypothalamic Circuit Node Controlling Social Behavior
Connectional architecture of a mouse hypothalamic circuit node controlling social behavior Liching Loa,b,c,1, Shenqin Yaod,1, Dong-Wook Kima,c, Ali Cetind, Julie Harrisd, Hongkui Zengd, David J. Andersona,b,c,2, and Brandon Weissbourda,b,c,2 aDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125; bHoward Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125; cTianqiao and Chrissy Chen Institute for Neuroscience, California Institute of Technology, Pasadena, CA 91125; and dAllen Institute for Brain Science, Seattle, WA 98109 Contributed by David J. Anderson, December 12, 2018 (sent for review October 11, 2018; reviewed by Clifford B. Saper and Richard B. Simerly) Type 1 estrogen receptor-expressing neurons in the ventrolateral Examples of collateralization to multiple targets, as seen in mono- subdivision of the ventromedial hypothalamus (VMHvlEsr1) play a amine neuromodulatory systems (16, 30), are few due to limitations causal role in the control of social behaviors, including aggression. in the number of tracers that can be used simultaneously (31). Here we use six different viral-genetic tracing methods to system- Type 1 estrogen receptor (Esr1)-expressing neurons in the atically map the connectional architecture of VMHvlEsr1 neurons. ventromedial hypothalamic nucleus (VMH) control social and These data reveal a high level of input convergence and output defensive behaviors, as well as metabolic states (6, 7, 9, 32; divergence (“fan-in/fan-out”) from and to over 30 distinct brain reviewed in refs. 33–38). Unlike the ARCAgrp and the MPOAGal regions, with a high degree (∼90%) of bidirectionality, including populations, which are primarily GABAergic (24), VMHvlEsr1 both direct as well as indirect feedback. -
A Platform for Brain-Wide Imaging and Reconstruction of Individual Neurons
TOOLS AND RESOURCES A platform for brain-wide imaging and reconstruction of individual neurons Michael N Economo1†, Nathan G Clack1†, Luke D Lavis1, Charles R Gerfen1,2, Karel Svoboda1, Eugene W Myers1,3*‡, Jayaram Chandrashekar1*‡ 1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States; 2Laboratory of Systems Neuroscience, National Institute of Mental Health, Bethesda, United States; 3Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany Abstract The structure of axonal arbors controls how signals from individual neurons are routed within the mammalian brain. However, the arbors of very few long-range projection neurons have been reconstructed in their entirety, as axons with diameters as small as 100 nm arborize in target regions dispersed over many millimeters of tissue. We introduce a platform for high-resolution, three-dimensional fluorescence imaging of complete tissue volumes that enables the visualization and reconstruction of long-range axonal arbors. This platform relies on a high-speed two-photon microscope integrated with a tissue vibratome and a suite of computational tools for large-scale image data. We demonstrate the power of this approach by reconstructing the axonal arbors of *For correspondence: myers@ multiple neurons in the motor cortex across a single mouse brain. mpi-cbg.de (EWM); DOI: 10.7554/eLife.10566.001 [email protected] (JC) †These authors contributed equally to this work Introduction ‡These authors also contributed A core goal of modern neuroscience is to map neural circuits across the entire brain, as long-range equally to this work connectivity dictates how information flows between brain regions (Bohland et al., 2009). -
Source of Early Regenerating Axons in Lamprey Spinal Cord Revealed by Wholemount Optical Clearing with BABB
cells Article Source of Early Regenerating Axons in Lamprey Spinal Cord Revealed by Wholemount Optical Clearing with BABB Guixin Zhang 1, William Rodemer 1 , Isabelle Sinitsa 2, Jianli Hu 1 and Michael E. Selzer 1,3,* 1 Shriners Hospitals Pediatric Research Center (Center for Neural Repair and Rehabilitation), Philadelphia, PA 19140, USA; [email protected] (G.Z.); [email protected] (W.R.); [email protected] (J.H.) 2 College of Science and Technology, Temple University, Philadelphia, PA 19122, USA; [email protected] 3 Department of Neurology, the Lewis Katz School of Medicine at Temple University, 3500 North Broad Street, Philadelphia, PA 19140, USA * Correspondence: [email protected] Received: 8 October 2020; Accepted: 4 November 2020; Published: 6 November 2020 Abstract: Many studies of axon regeneration in the lamprey focus on 18 pairs of large identified reticulospinal (RS) neurons, whose regenerative abilities have been individually quantified. Their axons retract during the first 2 weeks after transection (TX), and many grow back to the site of injury by 4 weeks. However, locomotor movements begin before 4 weeks and the lesion is invaded by axons as early as 2 weeks post-TX. The origins of these early regenerating axons are unknown. Their identification could be facilitated by studies in central nervous system (CNS) wholemounts, particularly if spatial resolution and examination by confocal microscopy were not limited by light scattering. We have used benzyl alcohol/benzyl benzoate (BABB) clearing to enhance the resolution of neuronal perikarya and regenerated axons by confocal microscopy in lamprey CNS wholemounts, and to assess axon regeneration by retrograde and anterograde labeling with fluorescent dye applied to a second TX caudal or rostral to the original lesion, respectively. -
Anterograde Neuronal Circuit Tracers Derived from Herpes Simplex Virus 1: Development, Application, and Perspectives
International Journal of Molecular Sciences Review Anterograde Neuronal Circuit Tracers Derived from Herpes Simplex Virus 1: Development, Application, and Perspectives 1,2 1,2 1,2 3 1,2, 4,5, , Dong Li , Hong Yang , Feng Xiong , Xiangmin Xu , Wen-Bo Zeng y, Fei Zhao * y and 1,2, , Min-Hua Luo * y 1 State Key Laboratory of Virology, CAS Center for Excellence in Brain Science and Intelligence Technology, Center for Biosafety Mega-Science, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; [email protected] (D.L.); [email protected] (H.Y.); [email protected] (F.X.); [email protected] (W.-B.Z.) 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Department of Anatomy and Neurobiology, School of Medicine, University of California, Irvine, CA 92697-1275, USA; [email protected] 4 School of Basic Medical Sciences, Capital Medical University, Beijing 100069, China 5 Chinese Institute for Brain Research, Beijing 102206, China * Correspondence: [email protected] (F.Z.); [email protected] (M.-H.L.) These authors contribute equally. y Received: 20 July 2020; Accepted: 17 August 2020; Published: 18 August 2020 Abstract: Herpes simplex virus type 1 (HSV-1) has great potential to be applied as a viral tool for gene delivery or oncolysis. The broad infection tropism of HSV-1 makes it a suitable tool for targeting many different cell types, and its 150 kb double-stranded DNA genome provides great capacity for exogenous genes. Moreover, the features of neuron infection and neuron-to-neuron spread also offer special value to neuroscience. -
Mapping Brain Circuitry with a Light Microscope Pavel Osten MD, Phd,1 and Troy W
Mapping Brain Circuitry with a Light Microscope Pavel Osten MD, PhD,1 and Troy W. Margrie, PhD2,3 1Cold Spring Harbor Laboratory Cold Spring Harbor, New York 2Department of Neuroscience, Physiology and Pharmacology University College London London, United Kingdom 3Division of Neurophysiology The MRC National Institute for Medical Research Mill Hill, London, United Kingdom © 2014 Osten Mapping Brain Circuitry with a Light MicroscopeXX 11 Introduction point connectivity between all anatomical regions in The beginning of the 21st century has seen a the mouse brain by means of sparse reconstructions renaissance in light microscopy and anatomical tract of anterograde and retrograde tracers (Bohland et tracing that is rapidly advancing our understanding al., 2009). Taking advantage of the automation of of the form and function of neuronal circuits. The LM instruments, powerful data processing pipelines, introduction of instruments for automated imaging and combinations of traditional and modern viral- of whole mouse brains, new cell-type-specific and vector-based tracers, teams of scientists at Cold transsynaptic tracers, and computational methods Spring Harbor Laboratory (CSHL), the Allen for handling the whole-brain datasets has opened the Institute for Brain Science (AIBS), and University door to neuroanatomical studies at an unprecedented of California, Los Angeles (UCLA), are racing to scale. In this chapter, we present an overview of the complete a connectivity map of the mouse brain— state of play and future opportunities in charting dubbed the “mesoscopic connectome”—which will long-range and local connectivity in the entire provide the scientific community with online atlases mouse brain and in linking brain circuits to function. -
CHENEU-D-11-00020R1 Title
Elsevier Editorial System(tm) for Journal of Chemical Neuroanatomy Manuscript Draft Manuscript Number: CHENEU-D-11-00020R1 Title: A half century of experimental neuroanatomical tracing Article Type: Review Article Keywords: Tract-tracing; Fluoro-Gold; Cholera toxin; Biotinylated dextran amine; Phaseolus vulgaris- leucoagglutinin Corresponding Author: Dr. Jose Luis Lanciego, MD, PhD Corresponding Author's Institution: Center for Applied Medical Research First Author: Jose Luis Lanciego, MD, PhD Order of Authors: Jose Luis Lanciego, MD, PhD; Floris G Wouterlood, PhD Abstract: Most of our current understanding of brain function and dysfunction has its firm base in what is so elegantly called the 'anatomical substrate', i.e. the anatomical, histological, and histochemical domains within the large knowledge envelope called 'neuroscience' that further includes physiological, pharmacological, neurochemical, behavioral, genetical and clinical domains. This review focuses mainly on the anatomical domain in neuroscience. To a large degree neuroanatomical tract-tracing methods have paved the way in this domain. Over the past few decades, a great number of neuroanatomical tracers have been added to the technical arsenal to fulfill almost any experimental demand. Despite this sophisticated arsenal, the decision which tracer is best suited for a given tracing experiment still represents a difficult choice. Although this review is obviously not intended to provide the last word in the tract-tracing field, we provide a survey of the available tracing methods including some of their roots. We further summarize our experience with neuroanatomical tracers, in an attempt to provide the novice user with some advice to help this person to select the most appropriate criteria to choose a tracer that best applies to a given experimental design. -
Anterograde Axonal Tracing with the Subunit B of Cholera Toxin
Journal of Neuroscience Methods 65 ( 19%) 10 I - 112 Anterograde axonal tracing with the subunit B of cholera toxin: a highly sensitive immunohistochemical protocol for revealing fine axonal morphology in adult and neonatal brains Alessandra Angelucci, Francisco Clasc6 ‘, Mriganka Sur * Department of’ Brain and Cognitive Sciences, Massachusetts Institute c>fTechnology. Cambridge, MA 02 139.4JSA Received 5 January 1995; revised 14 August 1995; accepted 9 November 1995 Abstract We report an improved immunohistochemicalprotocol for revealing anterogradeaxonal transportof the subunitB of choleratoxin (CTJ3) which stainsaxons and terminalsin great detail, so that single axons can be followed over long distancesand their arbors reconstructedin their entirety. Our modificationsenhance the quality of stainingmainly by increasingthe penetrationof the primary antibody in the tissue.The protocol can be modified to allow combinationin alternate sectionswith tetramethylbenzidine(TMB) histochemicalstaining of wheatgerm agglutininconjugated to horseradishperoxidase (WGA-HRP). Usingthis protocol, we testedthe performanceof CTB as an anterogradetracer undertwo experimentalparadigms which renderother anterogradetracers less sensitive or unreliable:(1) labeling the entire retinofugalprojection to the brain after injectionsinto the vitreal chamberof the eye, and (2) labeling developing projectionsin the cortex and thalamusof early postnatal mammals. Qualitative comparisonswere madewith other tracers(Phaseolus uulgaris leucoagglutinin,dextran rhodamine,biotinylated -
Neuroscience and Biobehavioral Reviews 56 (2015) 315–329
Neuroscience and Biobehavioral Reviews 56 (2015) 315–329 Contents lists available at ScienceDirect Neuroscience and Biobehavioral Reviews jou rnal homepage: www.elsevier.com/locate/neubiorev Review Placing the paraventricular nucleus of the thalamus within the brain circuits that control behavior ∗ Gilbert J. Kirouac Departments of Oral Biology and Psychiatry, Faculty of Health Sciences, University of Manitoba, Winnipeg, Manitoba, Canada a r t i c l e i n f o a b s t r a c t Article history: This article reviews the anatomical connections of the paraventricular nucleus of the thalamus (PVT) Received 6 January 2015 and discusses some of the connections by which the PVT could influence behavior. The PVT receives Received in revised form 29 July 2015 neurochemically diverse projections from the brainstem and hypothalamus with an especially strong Accepted 4 August 2015 innervation from peptide producing neurons. Anatomical evidence is also presented which suggests that Available online 7 August 2015 the PVT relays information from neurons involved in visceral or homeostatic functions. In turn, the PVT is a major source of projections to the nucleus accumbens, the bed nucleus of the stria terminalis and the Keywords: central nucleus of the amygdala as well as the cortical areas associated with these subcortical regions. Paraventricular nucleus of the thalamus Motivation The PVT is activated by conditions and cues that produce states of arousal including those with appetitive Emotions or aversive emotional valences. The paper focuses on the potential contribution of the PVT to circadian Arousal rhythms, fear, anxiety, food intake and drug-seeking. The information in this paper highlights the poten- Nucleus accumbens tial importance of the PVT as being a component of the brain circuits that regulate reward and defensive Prefrontal cortex behavior with the hope of generating more research in this relatively understudied region of the brain. -
Amygdalostriatal Projections in Reptiles: a Tract-Tracing Study in the Lizard Podarcis Hispanica
THE JOURNAL OF COMPARATIVE NEUROLOGY 479:287–308 (2004) Amygdalostriatal Projections in Reptiles: A Tract-Tracing Study in the Lizard Podarcis hispanica AMPARO NOVEJARQUE,1 ENRIQUE LANUZA,2 AND FERNANDO MARTI´NEZ-GARCI´A1* 1Departament de Biologia Funcional i Antropologia Fı´sica, Facultat de Cie`ncies Biolo`giques, Universitat de Vale`ncia, ES-46100 Vale`ncia, Spain 2Departament de Biologia Cellular, Facultat de Cie`ncies Biolo`giques, Universitat de Vale`ncia, ES-46100 Vale`ncia, Spain ABSTRACT Whereas the lacertilian anterior dorsal ventricular ridge contains unimodal sensory areas, its posterior part (PDVR) is an associative center that projects to the hypothalamus, thus being comparable to the amygdaloid formation. To further understand the organization of the reptilian cerebral hemispheres, we have used anterograde and retrograde tracing techniques to study the projections from the PDVR and adjoining areas (dorsolateral amyg- dala, DLA; deep lateral cortex, dLC; nucleus sphericus, NS) to the striatum in the lizard Podarcis hispanica. This information is complemented with a detailed description of the organization of the basal telencephalon of Podarcis. The caudal aspect of the dorsal ventric- ular ridge projects nontopographically mainly (but not exclusively) to the ventral striatum. The NS projects bilaterally (with strong ipsilateral dominance) to the nucleus accumbens, thus recalling the posteromedial cortical amygdala of mammals. The PDVR (especially its lateral aspect) and the dLC project massively to a continuum of structures connecting the striatoamygdaloid transition area (SAT) and the nucleus accumbens (rostrally), the projec- tion arising from the dLC being probably bilateral. Finally, the DLA projects massively and bilaterally to both the ventral and dorsal striatum, including the SAT.