Chapter 4 Alkanes
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Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
Introduction to Aromaticity
Introduction to Aromaticity Historical Timeline:1 Spotlight on Benzene:2 th • Early 19 century chemists derive benzene formula (C6H6) and molecular mass (78). • Carbon to hydrogen ratio of 1:1 suggests high reactivity and instability. • However, benzene is fairly inert and fails to undergo reactions that characterize normal alkenes. - Benzene remains inert at room temperature. - Benzene is more resistant to catalytic hydrogenation than other alkenes. Possible (but wrong) benzene structures:3 Dewar benzene Prismane Fulvene 2,4- Hexadiyne - Rearranges to benzene at - Rearranges to - Undergoes catalytic - Undergoes catalytic room temperature. Faraday’s benzene. hydrogenation easily. hydrogenation easily - Lots of ring strain. - Lots of ring strain. - Lots of ring strain. 1 Timeline is computer-generated, compiled with information from pg. 594 of Bruice, Organic Chemistry, 4th Edition, Ch. 15.2, and from Chemistry 14C Thinkbook by Dr. Steven Hardinger, Version 4, p. 26 2 Chemistry 14C Thinkbook, p. 26 3 Images of Dewar benzene, prismane, fulvene, and 2,4-Hexadiyne taken from Chemistry 14C Thinkbook, p. 26. Kekulé’s solution: - “snake bites its own tail” (4) Problems with Kekulé’s solution: • If Kekulé’s structure were to have two chloride substituents replacing two hydrogen atoms, there should be a pair of 1,2-dichlorobenzene isomers: one isomer with single bonds separating the Cl atoms, and another with double bonds separating the Cl atoms. • These isomers were never isolated or detected. • Rapid equilibrium proposed, where isomers interconvert so quickly that they cannot be isolated or detected. • Regardless, Kekulé’s structure has C=C’s and normal alkene reactions are still expected. - But the unusual stability of benzene still unexplained. -
Ep 2611776 B1
(19) TZZ ___T (11) EP 2 611 776 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C07D 211/36 (2006.01) C07D 471/04 (2006.01) 21.09.2016 Bulletin 2016/38 A61K 31/45 (2006.01) A61P 3/10 (2006.01) C07D 211/76 (2006.01) (21) Application number: 11822081.3 (86) International application number: (22) Date of filing: 25.08.2011 PCT/KR2011/006260 (87) International publication number: WO 2012/030106 (08.03.2012 Gazette 2012/10) (54) PRODUCTION METHOD OF INTERMEDIATE COMPOUND FOR SYNTHESIZING MEDICAMENT HERSTELLUNGSVERFAHREN FÜR EINE INTERMEDIATVERBINDUNG ZUR SYNTHESE EINES MEDIKAMENTS PROCÉDÉ DE PRODUCTION D’UN COMPOSÉ INTERMÉDIAIRE POUR LA SYNTHÈSE D’UN MÉDICAMENT (84) Designated Contracting States: EP-A2- 0 279 435 WO-A1-2006/104356 AL AT BE BG CH CY CZ DE DK EE ES FI FR GB WO-A1-2006/104356 US-A- 5 556 982 GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO US-A1- 2008 039 517 PL PT RO RS SE SI SK SM TR • KIM S ET AL: "Free Radical-Mediated (30) Priority: 03.09.2010 KR 20100086619 Carboxylation by Radical Reaction of Alkyl Iodides with Methyl Oxalyl Chloride", (43) Date of publication of application: TETRAHEDRONLETTERS, PERGAMON, GB, vol. 10.07.2013 Bulletin 2013/28 39, no. 40, 1 October 1998 (1998-10-01), pages 7317-7320, XP004133669, ISSN: 0040-4039, DOI: (73) Proprietor: LG Life Sciences Ltd 10.1016/S0040-4039(98)01568-8 Jongno-gu, Seoul 110-062 (KR) • CHRISTOPHE MORIN ET AL: "Synthesis and Evaluation of Boronated Lysine and (72) Inventors: Bis(carboranylated)[gamma]-Amino Acids as • KIM, Bong Chan Monomers for Peptide Assembly", EUROPEAN Daejeon 305-380 (KR) JOURNAL OF ORGANIC CHEMISTRY, vol. -
Isomer Distributions of Molecular Weight 247 and 273 Nitro-Pahs in Ambient Samples, NIST Diesel SRM, and from Radical-Initiated Chamber Reactions
Atmospheric Environment 55 (2012) 431e439 Contents lists available at SciVerse ScienceDirect Atmospheric Environment journal homepage: www.elsevier.com/locate/atmosenv Isomer distributions of molecular weight 247 and 273 nitro-PAHs in ambient samples, NIST diesel SRM, and from radical-initiated chamber reactions Kathryn Zimmermann a,1, Roger Atkinson a,1,2,3, Janet Arey a,1,2,*, Yuki Kojima b,4, Koji Inazu b,5 a Air Pollution Research Center, University of California, Riverside, CA 92521, USA b Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan article info abstract Article history: Molecular weight (mw) 247 nitrofluoranthenes and nitropyrenes and mw 273 nitrotriphenylenes (NTPs), Received 27 December 2011 nitrobenz[a]anthracenes, and nitrochrysenes were quantified in ambient particles collected in Riverside, Received in revised form CA, Tokyo, Japan, and Mexico City, Mexico. 2-Nitrofluoranthene (2-NFL) was the most abundant nitro- 28 February 2012 polycyclic aromatic hydrocarbon (nitro-PAH) in Riverside and Mexico City, and the mw 273 nitro-PAHs Accepted 5 March 2012 were observed in lower concentrations. However, in Tokyo concentrations of 1- þ 2-NTP were more similar to that of 2-NFL. NIST SRM 1975 diesel extract standard reference material was also analyzed to Keywords: examine nitro-PAH isomer distributions, and 12-nitrobenz[a]anthracene was identified for the first time. Nitro-PAH fl Atmospheric reactions The atmospheric formation pathways of nitro-PAHs were studied from chamber reactions of uo- Ambient particles ranthene, pyrene, triphenylene, benz[a]anthracene, and chrysene with OH and NO3 radicals at room Nitrotriphenylenes temperature and atmospheric pressure, with the PAH concentrations being controlled by their vapor pressures. -
Chemistry 0310 - Organic Chemistry 1 Chapter 3
Dr. Peter Wipf Chemistry 0310 - Organic Chemistry 1 Chapter 3. Reactions of Alkanes The heterolysis of covalent bonds yields anions and cations, whereas the homolysis creates radicals. Radicals are species with unpaired electrons that react mostly as electrophiles, seeking a single electron to complete their octet. Free radicals are important reaction intermediates and are formed in initiation reactions under conditions that cause the homolytic cleavage of bonds. In propagation steps, radicals abstract hydrogen or halogen atoms to create new radicals. Combinations of radicals are rare due to the low concentration of these reactive intermediates and result in termination of the radical chain. !CHAIN REACTION SUMMARY reactant product initiation PhCH3 HCl Cl 2 h DH = -16 kcal/mol chain-carrying intermediates n o r D (low concentrations) PhCH2 . Cl . propagation PhCH2 . or Cl . PhCH . 2 DH = -15 kcal/mol or Cl . PhCH2Cl or PhCH CH Ph PhCH2Cl Cl2 2 2 PhCH2Cl or Cl2 termination product reactant termination Alkanes are converted to alkyl halides by free radical halogenation reactions. The relative stability of radicals is increased by conjugation and hyperconjugation: R H H H . CH2 > R C . > R C . > H C . > H C . R R R H Oxygen is a diradical. In the presence of free-radical initiators such as metal salts, organic compounds and oxygen react to give hydroperoxides. These autoxidation reactions are responsible for the degradation reactions of oils, fatty acids, and other biological substances when exposed to air. Antioxidants such as hindered phenols are important food additives. Vitamins E and C are biological antioxidants. Radical chain reactions of chlorinated fluorocarbons in the stratosphere are responsible for the "ozone hole". -
Questions & Answers for the New Chemicals Program
Note: Effective January 19, 2016, PMNs must be submitted electronically. Learn more about the new e-PMN requirements. Questions & Answers for the New Chemicals Program (Q&A) U.S. Environmental Protection Agency Office of Pollution Prevention and Toxics Washington, DC 20460 2004 -1- TABLE OF CONTENTS Page 1. GENERAL PROGRAM INFORMATION 100. General ............................................................................................................ 1-1 101. Guidance for Completion of §5 Submission Form ......................................... 1-6 102. Inventory Searches/Bona Fides ....................................................................... 1-17 103. Chemical Identification ................................................................................... 1-22 104. Nomenclature .................................................................................................. 1-26 105. Inventory Issues ................................................................................................ 1-31 106. Review Process ............................................................................................... 1-31 107. Notice of Commencement .............................................................................. 1-33 108. User Fee .......................................................................................................... 1-35 109. Consolidated Notices ...................................................................................... 1-39 110. Joint Submissions .......................................................................................... -
Organic Chemistry PEIMS Code: N1120027 Abbreviation: ORGCHEM Number of Credits That May Be Earned: 1/2-1
Course: Organic Chemistry PEIMS Code: N1120027 Abbreviation: ORGCHEM Number of credits that may be earned: 1/2-1 Brief description of the course (150 words or less): Organic chemistry is an introductory course that is designed for the student who intends to continue future study in the sciences. The student will learn the concepts and applications of organic chemistry. Topics covered include aliphatic and aromatic compounds, alcohols, aldehydes, ketones, acids, ethers, amines, spectra, and stereochemistry. A brief introduction into biochemistry is also provided. The laboratory experiments will familiarize the student with the important laboratory techniques, specifically spectroscopy. Traditional high school chemistry courses focus on the inorganic aspects of chemistry whereas organic chemistry introduces the student to organic compounds and their properties, mechanisms of formations, and introduces the student to laboratory techniques beyond the traditional high school chemistry curriculum. Essential Knowledge and Skills of the course: (a) General requirements. This course is recommended for students in Grades 11-12. The recommended prerequisite for this course is AP Chemistry. (b) Introduction. Organic chemistry is designed to introduce students to the fundamental concepts of organic chemistry and key experimental evidence and data, which support these concepts. Students will learn to apply these data and concepts to chemical problem solving. Additionally, students will learn that organic chemistry is still evolving by reading about current breakthroughs in the field. Finally, students will gain appreciation for role that organic chemistry plays in modern technological developments in diverse fields, ranging from biology to materials science. (c) Knowledge and skills. (1) The student will be able to write both common an IUPAC names for the hydrocarbon. -
HISTORICAL ASPECTS of ORGANIC CHEMISTRY TEACHING (On the Example of Chemistry Direction of Higher Educational Institutions)
Journal of Critical Reviews ISSN- 2394-5125 Vol 7, Issue 13, 2020 CONCEPTUAL - HISTORICAL ASPECTS OF ORGANIC CHEMISTRY TEACHING (on the example of chemistry direction of Higher educational institutions) Rajabov Khudayor Madrimovich Uzbekistan, Khorasm region, Rajabov Khudayor Madrimovich, Doctor of philosophy (PhD) on pedagogical sciences, Urganch State University E-mail: [email protected] Received: 16.04.2020 Revised: 18.05.2020 Accepted: 13.06.2020 Abstract. The article reveals the historical approach on the teaching of organic chemistry in pedagogical universities. The development of modern trends and general competencies of students on the basis of historical approach, the creation of educational motivation, the focus on independent research and training of creative specialists are the most important directions. In this regard, it is important to improve the technology for organizing the educational process on the basis of historical principles in the system of training future chemistry teachers, to improve the mechanisms on the methodological support, to fulfill the system of competencies and cyclic diagnostics. Keywords: historical approach, organic chemistry, conceptual - historical aspects, professional competence, principle of historicism, methodology, self-improvement, innovation, non-historical, positive attitude, extracurricular activities. © 2020 by Advance Scientific Research. This is an open-access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/) DOI: http://dx.doi.org/10.31838/jcr.07.13.129 -
Electrophilic Mercuration and Thallation of Benzene and Substituted Benzenes in Trifluoroacetic Acid Solution* (Electrophilic Substitution/Selectivity) GEORGE A
Proc. Natl. Acad. Sci. USA Vol. 74, No. 10, pp. 4121-4125, October 1977 Chemistry Electrophilic mercuration and thallation of benzene and substituted benzenes in trifluoroacetic acid solution* (electrophilic substitution/selectivity) GEORGE A. OLAH, IWAO HASHIMOTOt, AND HENRY C. LINtt Institute of Hydrocarbon Chemistry, Department of Chemistry, University of Southern California, Los Angeles, California 90007; and the Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44101 Contributed by George A. Olah, July 18, 1977 ABSTRACT The mercuration and thallation of benzene and iments at 250 and quenched the mixtures after 5 min, whereas substituted benzenes was studied with mercuric and thallic Brown and Nelson carried out the reaction for 6.5 hr. In sub- trifluoroacetate, respectively, in trifluoroacetic acid. With the in view of the importance of both the mechanistic shortest reaction time (1 sec) at 00, the relative rate of mercu- sequent work, ration of toluene compared to that of benzene was 17.5, with and practical implications of the orientation-rate correlation, the isomer distribution in toluene of: ortho, 17.4%; meta, 5.9%; Brown and McGary (7), carried out a more detailed study of and para, 76.7%. The isomer distribution in toluene varied with the mercuration reaction. They concluded: "A redetermination the reaction time, significantly more at 25° than at 00. The of the isomer distributions and relative rates indicates excellent competitive thallation of benzene and toluene with thallic tri- agreement with the linear relationship of orientation and rel- fluoroacetate in trifluoroacetic acid at 150 showed the relative ative however, that the isomer distri- rate, toluene/benzene, to be 33, with the isomer distribution in rate." They recognized, toluene of: ortho, 9.5%; meta, 5.5%; and para, 85.0%. -
Carboxylic Acid Functionalized Butyl Rubber: from Synthesis to Applications
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 2-7-2013 12:00 AM Carboxylic Acid Functionalized Butyl Rubber: From Synthesis to Applications Matthew John McEachran The University of Western Ontario Supervisor Dr. Elizabeth R. Gillies The University of Western Ontario Graduate Program in Chemistry A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Matthew John McEachran 2013 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Materials Chemistry Commons, Medicinal-Pharmaceutical Chemistry Commons, and the Polymer Chemistry Commons Recommended Citation McEachran, Matthew John, "Carboxylic Acid Functionalized Butyl Rubber: From Synthesis to Applications" (2013). Electronic Thesis and Dissertation Repository. 1117. https://ir.lib.uwo.ca/etd/1117 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Carboxylic Acid Functionalized Butyl Rubber: From Synthesis to Applications (Spine title: Carboxylic Acid Functionalized Butyl Rubber) (Thesis format: Integrated Article) by Matthew John McEachran Graduate Program in Chemistry A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science The School of Graduate and Postdoctoral Studies The University of Western Ontario London, -
Cis-Trans Isomerism 2
Isomerism Isomerism • These compounds possess the same molecular formula but differ from each other in physical or chemical properties, and are called Isomers and the phenomenon is termed Isomerism • Since isomers have the same molecular formula, the difference in their properties must be due to different modes of combination or arrangement of atoms within the molecule. There are two main types of isomerism • (i) Structural Isomerism and (ii) Stereoisomerism. Structural Isomerism • When the isomerism is simply due to difference in the arrangement of atoms within the molecule without any reference to space, the phenomenon is termed Structural Isomerism. In other words, the structural isomers are compounds that have the same molecular formula but different structural formulas. Types of Structural Isomerism 1. Chain Isomerism 2. Position Isomerism 3. Functional Isomerism 4. Metamersim 5. Tautomerism Stereoisomerism • When isomerism is caused by the different arrangements of atoms or groups in space, the phenomenon is called Stereoisomerism (Greek, Stereos = occupying space). • The stereoisomers have the same structural formulas but differ in arrangement of atoms in space. In other words, stereoisomerism is exhibited by such compounds which have identical molecular structure but different configurations. Configuration refers to the 3-dimentional arrangement of atoms that characterizes a particular compound. Types of Stereoisomerism Stereoisomerism is of two types 1. Geometrical or Cis-Trans Isomerism 2. Optical Isomerism Structural Isomerism Chain Isomerism This type of isomerism arises from she difference in the structure of carbon chain which forms the nucleus of the molecule. It is, therefore, named as Chain or Nuclear Isomerism. Chain isomers have the same molecular formula but differ in the order in which the carbon atoms are bonded to each other For example, there are known two butanes which have the same molecular formula (C4H10) but differ in the structure of the carbon chains in their molecules. -
Introduction to Alkenes and Alkynes in an Alkane, All Covalent Bonds
Introduction to Alkenes and Alkynes In an alkane, all covalent bonds between carbon were σ (σ bonds are defined as bonds where the electron density is symmetric about the internuclear axis) In an alkene, however, only three σ bonds are formed from the alkene carbon -the carbon thus adopts an sp2 hybridization Ethene (common name ethylene) has a molecular formula of CH2CH2 Each carbon is sp2 hybridized with a σ bond to two hydrogens and the other carbon Hybridized orbital allows stronger bonds due to more overlap H H C C H H Structure of Ethylene In addition to the σ framework of ethylene, each carbon has an atomic p orbital not used in hybridization The two p orbitals (each with one electron) overlap to form a π bond (p bonds are not symmetric about the internuclear axis) π bonds are not as strong as σ bonds (in ethylene, the σ bond is ~90 Kcal/mol and the π bond is ~66 Kcal/mol) Thus while σ bonds are stable and very few reactions occur with C-C bonds, π bonds are much more reactive and many reactions occur with C=C π bonds Nomenclature of Alkenes August Wilhelm Hofmann’s attempt for systematic hydrocarbon nomenclature (1866) Attempted to use a systematic name by naming all possible structures with 4 carbons Quartane a alkane C4H10 Quartyl C4H9 Quartene e alkene C4H8 Quartenyl C4H7 Quartine i alkine → alkyne C4H6 Quartinyl C4H5 Quartone o C4H4 Quartonyl C4H3 Quartune u C4H2 Quartunyl C4H1 Wanted to use Quart from the Latin for 4 – this method was not embraced and BUT has remained Used English order of vowels, however, to name the groups