Real-Time Marine Snow Noise Removal from Underwater Video Sequences

Total Page:16

File Type:pdf, Size:1020Kb

Real-Time Marine Snow Noise Removal from Underwater Video Sequences Real-time marine snow noise removal from underwater video sequences Bogusław Cyganek Karol Gongola Bogusław Cyganek, Karol Gongola, “Real-time marine snow noise removal from underwater video sequences,” J. Electron. Imaging 27(4), 043002 (2018), doi: 10.1117/1.JEI.27.4.043002. Journal of Electronic Imaging 27(4), 043002 (Jul∕Aug 2018) Real-time marine snow noise removal from underwater video sequences Bogusław Cyganek* and Karol Gongola AGH University of Science and Technology, Department of Electronics, Krakow, Poland Abstract. Underwater images suffer from various degradation factors, such as blur, haze, color degradation, and marine snow. Marine snow is a type of noise, caused mostly by biological particles that fall into the ocean bottom, and which impedes proper object detection in underwater vision. A method for real-time marine snow removal from underwater color and monochrome video is presented. It is based on the proposed marine snow model, spatiotemporal patch analysis, and three-dimensional median filtering. The method was evaluated on a number of real underwater sequences endowed with the hand-annotated ground-truth data which were made available from the Internet. As shown by the experiments, the method attains high accuracy and performs in real time. © 2018 SPIE and IS&T [DOI: 10.1117/1.JEI.27.4.043002] Keywords: marine snow filtering; underwater image enhancement; real-time image filtering; remotely operated underwater vehicle. Paper 180201 received Mar. 7, 2018; accepted for publication Jun. 11, 2018; published online Jul. 5, 2018. 1 Introduction colleague biologists. The phenomenon of marine snow, or “ ” 8 Underwater image acquisition and processing find broad later called organic aggregates by Riley, has found interest interest in such areas as underwater exploration, inspection in biological sciences. Their role in the ocean ecosystem, as of underwater constructions, and underwater navigation, to for example food conveying or for various organisms, has name a few. However, their processing puts much higher been understood and appreciated for years of their study. In this respect, an interesting reading is the paper by demands than processing of air space images due to under- 9 water physical conditions, such as contrast and color decay, Suzuki and Kato summarizing their studies in the 1950s on suspended materials in the sea near Hokkaido. On the light scattering, blur, haze, and various types of noise. They 10 cause image quality degradation and lead to loss of conveyed other hand, in the 1980s Orzech and Nealson conducted information. There are many methods which allow for filter- research on measuring bioluminescence of marine snow ing of these unwanted effects. However, there is a special and its effect on the optical properties of the sea, as reported in their paper. An absorbing overview of research on marine type of noise, called marine snow, which greatly affects qual- snow, from the biological point of view, is provided in the ity of the underwater images and is difficult to filter out. paper by Silver.11 On the other hand, in the recent years vari- Marine snow is an effect caused by light back scattering ous methods of underwater image analysis and enhancement from small organic and mineral particles and air bubbles. have been proposed. The books by Duntley12 and the one by When falling down to the water basin, particles grow, Jerlov13 discuss basic physical properties of light propaga- which manifest in images as bright spots of various shapes tion in water conditions. McGlamery14,15 conducted research and sizes, which to some extent resemble snowflakes, as into analysis and simulation of an underwater camera system shown in exemplary frames in Fig. 1. Only recently this and laid out theoretical foundations of the radiometric model phenomenon found interest among researchers in order to of underwater image formation. Then Jaffe16 proposed exten- develop efficient methods of its elimination.1,2 However, — sion aimed at the design of the subsea image acquisition sys- the problem is not a trivial one the particles can be quite tem with optimized contrast and minimized backscattering large, of different structural and lighting characteristics, effect. This way, the Jaffe–McGlamery underwater image that make their statistical properties significantly different formation model has been derived. Recently, Jaffe17 pub- from other types of noise encountered in digital images. lished a comprehensive description of underwater optical im- Because of this, the classical linear and nonlinear filtering aging in the context of physical, biological, technological, methods, such as the averaging or median filters, usually and historical aspects. In this paper, the fundamental limits cannot be used to remove such type of noise from the imposed by the water environment are discussed and related 3,4 images. Thus, there is a need for development of models to the recent technological achievements. A slightly simpli- and methods of marine snow filtering, such as the one pro- fied version of the Jaffe–McGlamery underwater image posed in this paper. formation model was proposed by Trucco and Olmos- The term “marine snow” was coined after the Beebe’s Antillon18 for the self-tuning image restoration filter. An observations in Bathysphere,5,6 conducted in the 1930s, overview of the underwater optical systems is provided in then published in the book by Carson,7 one of the Beebe’s the paper by Kocak et al.19 Similarly, in the paper by Schettini and Corchs,20 theory and recent methods of *Address all correspondence to: Bogusław Cyganek, E-mail: cyganek@agh .edu.pl 1017-9909/2018/$25.00 © 2018 SPIE and IS&T Journal of Electronic Imaging 043002-1 Jul∕Aug 2018 • Vol. 27(4) Cyganek and Gongola: Real-time marine snow noise removal from underwater video sequences Fig. 1 Examples of marine snow in real underwater scenes. Marine snow manifests as lighter oval or rectangular and usually fast-moving shapes. underwater image restoration and enhancement are video to remove marine snow. Last but not least, for quanti- described. On the other hand, a method for single underwater tative evaluation and further comparisons, we provide under- image enhancement was recently proposed by Chongyi water sequences with hand-annotated ground-truth marine et al.21 In their method, numerical optimization is used for snow particles. color cast removal, followed by the visibility and contrast A significant achievement would be construction of an restoration based on the inherent relationship of medium appropriate marine snow model which would reflect various transmission maps of three color channels. Another interest- physical and biological conditions of the particles and the ing group of algorithms for smoothing and enhancement of environment. Such a model would be useful also in measur- underwater images, based on partial differential equations, ing quality of the marine snow filtering. In this respect, Slade was proposed by Nnolim.22 In the recent paper by Sánchez- et al.24 explored effects of particle aggregation and disaggre- Ferreira et al.,23 an algorithm for underwater image restora- gation on their inherent optical properties. They empirically tion is proposed which operates by evolutionary estimation investigated the role that aggregation plays in determining of the parameters of the underwater image formation model properties of the particle light scattering in coastal waters. using two quality metrics. After that, Boffety and Galland25 proposed a phenomeno- However, as alluded to previously, there are only few logical marine snow model for optical underwater image works which directly address the problem of marine snow simulation especially aimed at underwater color restoration. removal. In the paper by Banerjee et al.,1 a variant of the They argue that the simple model obtained by generation of median filtering, based on probability of existence of marine a salt-and-pepper noise does not take into account various snow, is proposed. In this method, high luminance pixels are physical conditions, such as water absorption, particles detected in each patch extracted from the image. Marine shapes and sizes, and signal backscattering by the particles. snow is modeled by the probability of observing sparse num- Therefore, Boffety and Galland proposed a simplified ber of high-intensity pixels two times in a patch and its approach, in which macroparticles are assumed to behave doubled size version. If such a probability is high, then like white Lambertian scatterers with the spatial profile of the center pixel of a patch is replaced with the median their reflection coefficient being a Gaussian function. value of the patch. However, this method works only for rel- The rest of this paper is organized as follows. In Sec. 2, atively small particles of few pixels, whereas marine snow the principles of the proposed method are presented. We start can manifest as much larger structures, as will be discussed. with the marine snow particle model, presented in Sec. 2.1, A modification to this method was proposed by Farhadifard followed by a detailed description of the marine snow detec- et al.2 They also follow the idea of median filtering after tion in Sec. 2.2, and its filtering method described in Sec. 2.3. supervised noise detection by a multiscale patch-based Experimental results are presented in Sec. 3. This paper ends approach. However, both of the above methods are limited with conclusions in Sec. 4. since they operate exclusively in spatial domain and only on 2 Method Description single frames not considering temporal relations. On the other hand, when processing underwater videos, a more ver- In this section, the characteristics of marine snow will be pre- satile spatiotemporal analysis is possible, as will be shown. sented. Especially, interesting and not previously exploited In this paper, we propose an efficient method of marine snow feature is the fast movement behavior of the marine snow elimination, which relies on analysis of spatiotemporal three- particles. dimensional (3-D) patches, i.e., tube-like structures, rather than on flat two-dimensional (2-D) ones.
Recommended publications
  • Methane Cold Seeps As Biological Oases in the High‐
    LIMNOLOGY and Limnol. Oceanogr. 00, 2017, 00–00 VC 2017 The Authors Limnology and Oceanography published by Wiley Periodicals, Inc. OCEANOGRAPHY on behalf of Association for the Sciences of Limnology and Oceanography doi: 10.1002/lno.10732 Methane cold seeps as biological oases in the high-Arctic deep sea Emmelie K. L. A˚ strom€ ,1* Michael L. Carroll,1,2 William G. Ambrose, Jr.,1,2,3,4 Arunima Sen,1 Anna Silyakova,1 JoLynn Carroll1,2 1CAGE - Centre for Arctic Gas Hydrate, Environment and Climate, Department of Geosciences, UiT The Arctic University of Norway, Tromsø, Norway 2Akvaplan-niva, FRAM – High North Research Centre for Climate and the Environment, Tromsø, Norway 3Division of Polar Programs, National Science Foundation, Arlington, Virginia 4Department of Biology, Bates College, Lewiston, Maine Abstract Cold seeps can support unique faunal communities via chemosynthetic interactions fueled by seabed emissions of hydrocarbons. Additionally, cold seeps can enhance habitat complexity at the deep seafloor through the accretion of methane derived authigenic carbonates (MDAC). We examined infaunal and mega- faunal community structure at high-Arctic cold seeps through analyses of benthic samples and seafloor pho- tographs from pockmarks exhibiting highly elevated methane concentrations in sediments and the water column at Vestnesa Ridge (VR), Svalbard (798 N). Infaunal biomass and abundance were five times higher, species richness was 2.5 times higher and diversity was 1.5 times higher at methane-rich Vestnesa compared to a nearby control region. Seabed photos reveal different faunal associations inside, at the edge, and outside Vestnesa pockmarks. Brittle stars were the most common megafauna occurring on the soft bottom plains out- side pockmarks.
    [Show full text]
  • Brochure.Pdf
    Two Little Fishies Two Little Fishies Inc. 4016 El Prado Blvd., Coconut Grove, Florida 33133 U.S.A. Tel (+01) 305 661.7742 Fax (+01) 305 661.0611 eMail: [email protected] ww w. t w o l i t t l e f i s h i e s . c o m © 2004 Two Little Fishies Inc. Two Little Fishies is a registered trademark of Two Little Fishies Inc.. All illustrations, photos and specifications contained in this broc h u r e are based on the latest pr oduct information available at the time of publication. Two Little Fishies Inc. res e r ves the right to make changes at any time, without notice. Printed in USA V.4 _ 2 0 0 4 Simple, Elegant, Practical,Solutions Useful... Two Little Fishies Two Little Fishies, Inc. was founded in 1991 to pr omote the reef aquarium hobby with its in t ro d u c t o r y video and books about ree f aquariums. The company now publishes and distributes the most popular reef aquarium ref e r ence books and identification guides in English, German French and Italian, under the d.b.a. Ricordea Publishing. Since its small beginning, Two Little Fishies has also grown to become a manufacturer and im p o r ter of the highest quality products for aquariums and water gardens, with interna t i o n a l distribution in the pet, aquaculture, and water ga r den industries. Two Little Fishies’ prod u c t line includes trace element supplements, calcium supplements and buffers, phosphate- fr ee activated carbon, granular iron - b a s e d phosphate adsorption media, underwa t e r bonding compounds, and specialty foods for fish and invertebrates.
    [Show full text]
  • Ch. 9: Ocean Biogeochemistry
    6/3/13 Ch. 9: Ocean Biogeochemistry NOAA photo gallery Overview • The Big Picture • Ocean Circulation • Seawater Composition • Marine NPP • Particle Flux: The Biological Pump • Carbon Cycling • Nutrient Cycling • Time Pemitting: Hydrothermal venting, Sulfur cycling, Sedimentary record, El Niño • Putting It All Together Slides borrowed from Aradhna Tripati 1 6/3/13 Ocean Circulation • Upper Ocean is wind-driven and well mixed • Surface Currents deflected towards the poles by land. • Coriolis force deflects currents away from the wind, forming mid-ocean gyres • Circulation moves heat poleward • River influx is to surface ocean • Atmospheric equilibrium is with surface ocean • Primary productivity is in the surface ocean Surface Currents 2 6/3/13 Deep Ocean Circulation • Deep and Surface Oceans separated by density gradient caused by differences in Temperature and Salinity • This drives thermohaline deep circulation: * Ice forms in the N. Atlantic and Southern Ocean, leaving behind cold, saline water which sinks * Oldest water is in N. Pacific * Distribution of dissolved gases and nutrients: N, P, CO2 Seawater Composition • Salinity is defined as grams of salt/kg seawater, or parts per thousand: %o • Major ions are in approximately constant concentrations everywhere in the oceans • Salts enter in river water, and are removed by porewater burial, sea spray and evaporites (Na, Cl). • Calcium and Sulfate are removed in biogenic sediments • Magnesium is consumed in hydrothermal vents, in ionic exchange for Ca in rock. • Potassium adsorbs in clays. 3 6/3/13 Major Ions in Seawater The Two-Box Model of the Ocean Precipitation Evaporation River Flow Upwelling Downwelling Particle Flux Sedimentation 4 6/3/13 Residence time vs.
    [Show full text]
  • Ocean Primary Production
    Learning Ocean Science through Ocean Exploration Section 6 Ocean Primary Production Photosynthesis very ecosystem requires an input of energy. The Esource varies with the system. In the majority of ocean ecosystems the source of energy is sunlight that drives photosynthesis done by micro- (phytoplankton) or macro- (seaweeds) algae, green plants, or photosynthetic blue-green or purple bacteria. These organisms produce ecosystem food that supports the food chain, hence they are referred to as primary producers. The balanced equation for photosynthesis that is correct, but seldom used, is 6CO2 + 12H2O = C6H12O6 + 6H2O + 6O2. Water appears on both sides of the equation because the water molecule is split, and new water molecules are made in the process. When the correct equation for photosynthe- sis is used, it is easier to see the similarities with chemo- synthesis in which water is also a product. Systems Lacking There are some ecosystems that depend on primary Primary Producers production from other ecosystems. Many streams have few primary producers and are dependent on the leaves from surrounding forests as a source of food that supports the stream food chain. Snow fields in the high mountains and sand dunes in the desert depend on food blown in from areas that support primary production. The oceans below the photic zone are a vast space, largely dependent on food from photosynthetic primary producers living in the sunlit waters above. Food sinks to the bottom in the form of dead organisms and bacteria. It is as small as marine snow—tiny clumps of bacteria and decomposing microalgae—and as large as an occasional bonanza—a dead whale.
    [Show full text]
  • Eukaryotic Microbes, Principally Fungi and Labyrinthulomycetes, Dominate Biomass on Bathypelagic Marine Snow
    The ISME Journal (2017) 11, 362–373 © 2017 International Society for Microbial Ecology All rights reserved 1751-7362/17 www.nature.com/ismej ORIGINAL ARTICLE Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow Alexander B Bochdansky1, Melissa A Clouse1 and Gerhard J Herndl2 1Ocean, Earth and Atmospheric Sciences, Old Dominion University, Norfolk, VA, USA and 2Department of Limnology and Bio-Oceanography, Division of Bio-Oceanography, University of Vienna, Vienna, Austria In the bathypelagic realm of the ocean, the role of marine snow as a carbon and energy source for the deep-sea biota and as a potential hotspot of microbial diversity and activity has not received adequate attention. Here, we collected bathypelagic marine snow by gentle gravity filtration of sea water onto 30 μm filters from ~ 1000 to 3900 m to investigate the relative distribution of eukaryotic microbes. Compared with sediment traps that select for fast-sinking particles, this method collects particles unbiased by settling velocity. While prokaryotes numerically exceeded eukaryotes on marine snow, eukaryotic microbes belonging to two very distant branches of the eukaryote tree, the fungi and the labyrinthulomycetes, dominated overall biomass. Being tolerant to cold temperature and high hydrostatic pressure, these saprotrophic organisms have the potential to significantly contribute to the degradation of organic matter in the deep sea. Our results demonstrate that the community composition on bathypelagic marine snow differs greatly from that in the ambient water leading to wide ecological niche separation between the two environments. The ISME Journal (2017) 11, 362–373; doi:10.1038/ismej.2016.113; published online 20 September 2016 Introduction or dense phytodetritus, but a large amount of transparent exopolymer particles (TEP, Alldredge Deep-sea life is greatly dependent on the particulate et al., 1993), which led us to conclude that they organic matter (POM) flux from the euphotic layer.
    [Show full text]
  • And Bathypelagic Fish Interactions with Seamounts and Mid-Ocean Ridges
    Meso- and bathypelagic fish interactions with seamounts and mid-ocean ridges Tracey T. Sutton1, Filipe M. Porteiro2, John K. Horne3 and Cairistiona I. H. Anderson3 1 Harbor Branch Oceanographic Institution, 5600 US Hwy. 1 N, Fort Pierce FL, 34946, USA (Current address: Virginia Institute of Marine Science, P.O.Box 1346, Gloucester Point, Virginia 23062-1346) 2 DOP, University of the Azores, Horta, Faial, the Azores 3 School of Aquatic and Fishery Sciences, University of Washington, Seattle WA, 98195, USA Contact e-mail (Sutton): [email protected]"[email protected] Tracey T. Sutton T. Tracey Abstract The World Ocean's midwaters contain the vast majority of Earth's vertebrates in the form of meso- and bathypelagic ('deep-pelagic,' in the combined sense) fishes. Understanding the ecology and variability of deep-pelagic ecosystems has increased substantially in the past few decades due to advances in sampling/observation technology. Researchers have discovered that the deep sea hosts a complex assemblage of organisms adapted to a “harsh” environment by terrestrial standards (i.e., dark, cold, high pressure). We have learned that despite the lack of physical barriers, the deep-sea realm is not a homogeneous ecosystem, but is spatially and temporally variable on multiple scales. While there is a well-documented reduction of biomass as a function of depth (and thus distance from the sun, ergo primary production) in the open ocean, recent surveys have shown that pelagic fish abundance and biomass can 'peak' deep in the water column in association with abrupt topographic features such as seamounts and mid-ocean ridges. We review the current knowledge on deep-pelagic fish interactions with these features, as well as effects of these interactions on ecosystem functioning.
    [Show full text]
  • Marine Snow Tracking Stereo Imaging System Junsu Jang
    Marine Snow Tracking Stereo Imaging System by Junsu Jang B.Sc., Carnegie Mellon University (2018) Submitted to the Program in Media Arts and Sciences, School of Architecture and Planning in partial fulfillment of the requirements for the degree of Master of Science in Media Arts and Sciences at the Massachusetts Institute of Technology September 2020 © Massachusetts Institute of Technology 2020. All rights reserved. Author.............................................................. Program in Media Arts and Sciences August 17th, 2020 Certified by. Joseph A. Paradiso Professor of Media Arts and Sciences Accepted by . Tod Machover Academic Head, Program in Media Arts and Sciences Marine Snow Tracking Stereo Imaging System by Junsu Jang Submitted to the Program in Media Arts and Sciences, School of Architecture and Planning on August 17th, 2020, in partial fulfillment of the requirements for the degree of Master of Science in Media Arts and Sciences Abstract The transport of particles of organic carbon from the ocean’s surface to its bottom plays a key role in the global carbon cycle and carbon sequestration. Quantifying the rate of this Biological Carbon Pump – the size and velocity distribution of falling particles below the mixing layer, for example – is thus of considerable importance. The complexity of this Pump, however, together with systematic biases in available measurement methodologies and vast spatial and temporal undersampling, makes this quantification difficult. In this thesis I set out to design and build a low-cost underwater stereo-imaging system to remotely measure the flux of sinking particles in the mid-ocean. By record- ing time-lapsed images of marine snow falling through the imaging volume over day- to-week timescales, we can estimate both the particle size distributions and, via 3D particle tracking velocimetry, their velocity distributions too.
    [Show full text]
  • Marine Snow, Zooplankton and Thin Layers: Indications of a Trophic Link from Small-Scale Sampling with the Video Plankton Recorder
    Vol. 468: 57–69, 2012 MARINE ECOLOGY PROGRESS SERIES Published November 14 doi: 10.3354/meps09984 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Marine snow, zooplankton and thin layers: indications of a trophic link from small-scale sampling with the Video Plankton Recorder Klas O. Möller1,*, Michael St. John2,1, Axel Temming1, Jens Floeter1, Anne F. Sell3, Jens-Peter Herrmann1, Christian Möllmann1 1Institute for Hydrobiology and Fisheries Science, Center for Earth System Research and Sustainability (CEN), KlimaCampus, University of Hamburg, Grosse Elbstrasse 133, 22767 Hamburg, Germany 2National Institute of Aquatic Resources at the Technical University of Denmark, Charlottenlund Castle, 2920 Charlottenlund, Denmark 3Johann Heinrich von Thünen-Institut, Institute of Sea Fisheries, Palmaille 9, 22767 Hamburg, Germany ABSTRACT: Marine aggregates of biogenic origin, known as marine snow, are considered to play a major role in the ocean’s particle flux and may represent a concentrated food source for zoo- plankton. However, observing the marine snow−zooplankton interaction in the field is difficult since conventional net sampling does not collect marine snow quantitatively and cannot resolve so-called thin layers in which this interaction occurs. Hence, field evidence for the importance of the marine snow−zooplankton link is scarce. Here we employed a Video Plankton Recorder (VPR) to quantify small-scale (metres) vertical distribution patterns of fragile marine snow aggregates and zooplankton in the Baltic Sea during late spring 2002. By using this non-invasive optical sam- pling technique we recorded a peak in copepod abundance (ca. 18 ind. l−1) associated with a pro- nounced thin layer (50 to 55 m) of marine snow (maximum abundance of 28 particles l−1), a feature rarely resolved.
    [Show full text]
  • Zooplankton Fecal Pellets, Marine Snow and Sinking Phytoplankton Blooms
    AQUATIC MICROBIAL ECOLOGY Vol. 27: 57–102, 2002 Published February 18 Aquat Microb Ecol REVIEW Zooplankton fecal pellets, marine snow and sinking phytoplankton blooms Jefferson T. Turner* School for Marine Science and Technology, University of Massachusetts Dartmouth, 706 South Rodney French Boulevard, New Bedford, Massachusetts 02744-1221, USA ABSTRACT: Zooplankton fecal pellets have long been thought to be a dominant component of the sedimentary flux in marine and freshwater ecosystems, but that view is changing. The last 2 decades have seen publication of >500 studies using sediment traps, which reveal that zooplankton fecal pellets often constitute only a minor or variable proportion of the sedimentary flux. Substantial pro- portions of this flux are from organic aggregates (‘marine snow’) of various origins, including phyto- plankton blooms, which sediment directly to the benthos. It now appears that mainly large fecal pel- lets of macrozooplankton and fish are involved in the sedimentary flux. Smaller fecal pellets of microzooplankton and small mesozooplankton are mostly recycled or repackaged in the water column by microbial decomposition and coprophagy, contributing more to processes in the water column than flux to the benthos. The relative contributions of fecal pellets, marine snow and sinking phytoplankton to the vertical flux and recycling of materials in the water column are highly variable, dependent upon multiple interacting factors. These include variations in productivity, biomass, size spectra and composition of communities
    [Show full text]
  • Deep-Sea Research II 129 (2016) 4–19
    Deep-Sea Research II 129 (2016) 4–19 Contents lists available at ScienceDirect Deep-Sea Research II journal homepage: www.elsevier.com/locate/dsr2 The Gulf of Mexico ecosystem, six years after the Macondo oil well blowout Samantha B. Joye a,n, Annalisa Bracco b, Tamay M. Özgökmen c, Jeffrey P. Chanton d, Martin Grosell c, Ian R. MacDonald d, Erik E. Cordes e, Joseph P. Montoya f, Uta Passow g a Department of Marine Sciences, University of Georgia, Athens, GA 30602-3636, USA b School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA c Rosensteil School of Marine and Atmospheric Science, University of Miami, Miami, FL 33149, USA d Department of Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, FL 32306, USA e Department of Biology, Temple University, Philadelphia, PA 19122, USA f College of Marine Sciences, University of South Florida, St. Petersburg, FL 33701, USA g Marine Science Institute, University of California, Santa Barbara, CA 93106, USA article info abstract Article history: The Gulf of Mexico ecosystem is a hotspot for biological diversity and supports a number of industries, Received 27 April 2016 from tourism to fishery production to oil and gas exploration, that serve as the economic backbone of Accepted 28 April 2016 Gulf coast states. The Gulf is a natural hydrocarbon basin, rich with stores of oil and gas that lie in Available online 12 May 2016 reservoirs deep beneath the seafloor. The natural seepage of hydrocarbons across the Gulf system is extensive and, thus, the system's biological components experience ephemeral, if not, frequent, hydro- carbon exposure.
    [Show full text]
  • Davidson Seamount Management Zone
    Monterey Bay National Marine Sanctuary Davidson Seamount Management Zone Management Plan Living Document June 2013 version 6.0 TABLE OF CONTENTS EXECUTIVE SUMMARY .......................................................................................................................................... 1 GOAL ............................................................................................................................................................................ 1 INTRODUCTION ........................................................................................................................................................ 1 CHARACTERISTICS OF SEAMOUNTS AND THE DAVIDSON SEAMOUNT MANAGEMENT ZONE ...................................... 1 NATIONAL SIGNIFICANCE OF DAVIDSON SEAMOUNT ................................................................................................. 3 POTENTIAL THREATS TO THE DAVIDSON SEAMOUNT ................................................................................................ 4 EXPANSION OF THE MBNMS TO INCLUDE DAVIDSON SEAMOUNT MANAGEMENT ZONE ......................................... 5 ACTION PLAN STATUS – STRATEGIES, ACTIVITIES, AND PARTNERS ................................................... 6 STRATEGY DS-1: CONDUCT SITE CHARACTERIZATION ............................................................................................. 6 STRATEGY DS-2: CONDUCT ECOLOGICAL PROCESSES INVESTIGATIONS ................................................................... 9 STRATEGY DS-3: DEVELOP
    [Show full text]
  • Nutrient Cycles in Marine Ecosystems
    Nutrient Cycles in Marine Ecosystems Chapter 4 Nitrogen, Carbon, Magnesium, Calcium, Phophorous Chapter 4 vocabulary 1. Nutrient 6. Assimilation 11.Leaching 2. Decomposer 7. Residence time 12.Marine snow 3. Reservoir 8. Sink 13.Dissociation 4. Run-off 9. Source 14.Diazotroph 5. Upwelling 10.Infiltration 15.Saprophytic Cycling of elements in the ecosystem Nutrient cycles move nutrients that are essential for life through the food chain through feeding. Nutrients: a chemical that provides what is needed for organisms to live and grow. When organisms die, decomposers break down the organic tissue and return it to inorganic forms. (inorganic forms could remain in ecosystem for millions of years before being synthesized into organic forms) Decomposer: bacteria and fungi that break down dead organic matter and release the nutrients back into the environment. The ocean is a reservoir for elements….. Reservoir: part of the abiotic phase of the nutrient cycle where nutrients can remain for long periods of time. Producers and microorganisms are able to fix inorganic molecules to organic substances. In this way… the abiotic part of the cycle can be moved into the biotic. (Fecal matter/dead organisms) Some are added to coral reefs and/or removed from the ocean altogether from harvesting. Molecules are added in through run-off and upwelling. Run-off: the flow of water from land caused by precipitation Upwelling: the movement of cold, nutrient rich water from deep in the ocean to the surface CONSUMERS BIOTIC PHASE PRIMARY DECOMPOSERS PRODUCERS ABIOTIC PHASE Nutrients found as inorganic ions and compounds in the atmosphere, dissolved in water, forming rocks and sediments Nutrient cycles Nutrients move from from the abiotic to the biotic when nutrients are absorbed and assimilated by producers Assimilation: the conversion of a nutrient into a usable form that can be incorporated into the tissues of an organism.
    [Show full text]