Photosynthesis in Higher Plants
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Lecture 29 Spring 2007
Geol. 656 Isotope Geochemistry Lecture 29 Spring 2007 ISOTOPE FRACTIONATION IN THE BIOSPHERE INTRODUCTION As we noted, biological processes often involve large isotopic fractionations. Indeed, biological proc- esses are the most important cause of variations in the isotope composition of carbon, nitrogen, and sul- fur. For the most part, the largest fractionations occur during the initial production of organic matter by the so-called primary producers, or autotrophs. These include all plants and many kinds of bacteria. The most important means of production of organic matter is photosynthesis, but organic matter may also be produced by chemosynthesis, for example at mid-ocean ridge hydrothermal vents. Large frac- tions of both carbon and nitrogen occur during primary production. Additional fractionations also oc- cur in subsequent reactions and up through the food chain as hetrotrophs consume primary producers, but these are generally smaller. CARBON ISOTOPE FRACTIONATION DURING PHOTOSYNTHESIS The most important of process producing isotopic fractionation of carbon is photosynthesis. As we earlier noted, photosynthetic fractionation of carbon isotopes is primarily kinetic. The early work of Park and Epstein (1960) suggested fractionation occurred in several steps. Subsequent work has eluci- dated the fractionations involved in these steps, which we will consider in more detail here. For terrestrial plants (those utilizing atmospheric CO2), the first step is diffusion of CO2 into the boundary layer surrounding the leaf, through the stomata, and internally in the leaf. The average δ13C of various species of plants has been correlated with the stomatal conductance (Delucia et al., 1988), in- dicating that diffusion into the plant is indeed important in fractionating carbon isotopes. -
Lecture 7 - the Calvin Cycle and the Pentose Phosphate Pathway
Lecture 7 - The Calvin Cycle and the Pentose Phosphate Pathway Chem 454: Regulatory Mechanisms in Biochemistry University of Wisconsin-Eau Claire 1 Introduction The Calvin cycle Text The dark reactions of photosynthesis in green plants Reduces carbon from CO2 to hexose (C6H12O6) Requires ATP for free energy and NADPH as a reducing agent. 2 2 Introduction NADH versus Text NADPH 3 3 Introduction The Pentose Phosphate Pathway Used in all organisms Glucose is oxidized and decarboxylated to produce reduced NADPH Used for the synthesis and degradation of pentoses Shares reactions with the Calvin cycle 4 4 1. The Calvin Cycle Source of carbon is CO2 Text Takes place in the stroma of the chloroplasts Comprises three stages Fixation of CO2 by ribulose 1,5-bisphosphate to form two 3-phosphoglycerate molecules Reduction of 3-phosphoglycerate to produce hexose sugars Regeneration of ribulose 1,5-bisphosphate 5 5 1. Calvin Cycle Three stages 6 6 1.1 Stage I: Fixation Incorporation of CO2 into 3-phosphoglycerate 7 7 1.1 Stage I: Fixation Rubisco: Ribulose 1,5- bisphosphate carboxylase/ oxygenase 8 8 1.1 Stage I: Fixation Active site contains a divalent metal ion 9 9 1.2 Rubisco Oxygenase Activity Rubisco also catalyzes a wasteful oxygenase reaction: 10 10 1.3 State II: Formation of Hexoses Reactions similar to those of gluconeogenesis But they take place in the chloroplasts And use NADPH instead of NADH 11 11 1.3 State III: Regeneration of Ribulose 1,5-Bisphosphosphate Involves a sequence of transketolase and aldolase reactions. 12 12 1.3 State III: -
Biol 1020: Photosynthesis
Chapter 10: Photosynthesis Energy and Carbon Sources Electromagnetic Spectrum and Light Chloroplasts Photosynthesis Overview Light Reactions C3 Cycle Photorespiration Supplemental Carbon Fixation: C4 and CAM pathways . • List and differentiate the 4 possible groups of organisms based on how they obtain energy and useful carbon. Classification by Energy and Carbon Sources energy source chemotrophs can only get energy directly from chemical compounds phototrophs can get energy directly from light (these organisms can use chemical compounds as energy sources as well) . Classification by Energy and Carbon Sources carbon source autotrophs can fix carbon dioxide, thus they can use CO2 as a carbon source heterotrophs cannot fix CO2; they use organic molecules from other organisms as a carbon source . Classification by Energy and Carbon Sources combined, these leads to 4 possible groups: photoautotrophs – carry out photosynthesis use light energy to fix CO2 store energy in chemical bonds of organic molecules includes green plants, algae, and some bacteria photoheterotrophs – use light energy but cannot fix CO2; some nonsulfur purple bacteria chemoautotrophs – obtain energy from reduced inorganic molecules and use some of it to fix CO2; some bacteria chemoheterotrophs – use organic molecules as both carbon and energy sources dependent completely on other organisms for energy capture and carbon fixation includes all animals, all fungi, most protists, and most bacteria . • List and differentiate the 4 possible groups of -
The Summary Equation of Cellular Respiration. the Difference Between
The summary equation of cellular respiration. The difference between fermentation and cellular respiration. The role of glycolysis in oxidizing glucose to two molecules of pyruvate. The process that brings pyruvate from the cytosol into the mitochondria and introduces it into the citric acid cycle. How the process of chemiosmosis utilizes the electrons from NADH and FADH2 to produce ATP. E flows into ecosystem as Sunlight Autotrophs transform it into chemical E O2 released as byproduct Cells use some of chemical E in organic molecules to make ATP E leaves as heat Catabolic Pathway Complex organic Simpler waste molecules products with less E Some E used to do work and dissipated as heat Introduction Respiration (15 min) Respiration: exergonic (releases E) C6H12O6 + 6O2 6H2O + 6CO2 + ATP (+ heat) Fermentation exergonic (releases E) C6H12O6 2-3 C products + ATP (small amounts) Photosynthesis: endergonic (requires E) 6H2O + 6CO2 + Light C6H12O6 + 6O2 oxidation (donor) lose e- Xe- + Y X + Ye- reduction (acceptor) gain e- Oxidation = lose e- OiLRiG or LeoGer Reduction = gain e- oxidation C6H12O6 + 6O2 6H2O + 6CO2 + ATP reduction Energy is released as electrons “fall” from organic molecules to O2 Broken down into steps: Food (Glucose) NADH ETC O2 . Coenzyme NAD+ = electron acceptor . NAD+ picks up 2e- and 2H+ NADH (stores E) . NADH carries electrons to the electron transport chain (ETC) - . ETC: transfers e to O2 to make H2O ; releases energy Generate small amount of ATP Phosphorylation: enzyme transfers a phosphate to other -
Bioinorganic Chemistry Content
Bioinorganic Chemistry Content 1. What is bioinorganic chemistry? 2. Evolution of elements 3. Elements and molecules of life 4. Phylogeny 5. Metals in biochemistry 6. Ligands in biochemistry 7. Principals of coordination chemistry 8. Properties of bio molecules 9. Biochemistry of main group elements 10. Biochemistry of transition metals 11. Biochemistry of lanthanides and actinides 12. Modell complexes 13. Analytical methods in bioinorganic 14. Applications areas of bioinorganic chemistry "Simplicity is the ultimate sophistication" Leonardo Da Vinci Bioinorganic Chemistry Slide 1 Prof. Dr. Thomas Jüstel Literature • C. Elschenbroich, A. Salzer, Organometallchemie, 2. Auflage, Teubner, 1988 • S.J. Lippard, J.N. Berg, Bioinorganic Chemistry, Spektrum Akademischer Verlag, 1995 • J.E. Huheey, E. Keiter, R. Keiter, Anorganische Chemie – Prinzipien von Struktur und Reaktivität, 3. Auflage, Walter de Gruyter, 2003 • W. Kaim, B. Schwederski: Bioinorganic Chemistry, 4. Auflage, Vieweg-Teubner, 2005 • H. Rauchfuß, Chemische Evolution und der Ursprung des Lebens, Springer, 2005 • A.F. Hollemann, N. Wiberg, Lehrbuch der Anorganischen Chemie, 102. Auflage, de Gruyter, 2007 • I. Bertini, H.B. Gray, E.I. Stiefel, J.S. Valentine, Biological Chemistry, University Science Books, 2007 • N. Metzler-Nolte, U. Schatzschneier, Bioinorganic Chemistry: A Practical Course, Walter de Gruyter, 2009 • W. Ternes, Biochemie der Elemente, Springer, 2013 • D. Rabinovich, Bioinorganic Chemistry, Walter de Gruyter, 2020 Bioinorganic Chemistry Slide 2 Prof. Dr. Thomas Jüstel 1. What is Bioinorganic Chemistry? A Highly Interdisciplinary Science at the Verge of Biology, Chemistry, Physics, and Medicine Biochemistry Inorganic Chemistry (Micro)- Physics & Biology Spectroscopy Bioinorganic Chemistry Pharmacy & Medicine & Toxicology Physiology Diagnostics Bioinorganic Chemistry Slide 3 Prof. Dr. Thomas Jüstel 2. Evolution of the Elements Most Abundant Elements in the Universe According to Atomic Fraction Are: 1. -
BIOLOGICAL SCIENCE FIFTH EDITION Freeman Quillin Allison 10
BIOLOGICAL SCIENCE FIFTH EDITION Freeman Quillin Allison 10 Lecture Presentation by Cindy S. Malone, PhD, California State University Northridge © 2014 Pearson Education, Inc. Roadmap 10 In this chapter you will learn how Photosynthesis links life to the power of the Sun by previewing by examining Conversion of light How photosynthetic pigments energy into chemical capture light energy 10.2 energy 10.1 then looking closer at Energy flow and ATP Photosystem II production10.3 Photosystem I and exploring CO2 fixation and reduction to The Calvin cycle form sugars 10.4 © 2014 Pearson Education, Inc. ▪ Photosynthesis – Is the process of using sunlight to produce carbohydrate – Requires sunlight, carbon dioxide, and water – Produces oxygen as a by-product ▪ The overall reaction when glucose is the carbohydrate: 6 CO2 6 H2O light energy C6H12O6 6 O2 © 2014 Pearson Education, Inc. ▪ Photosynthesis contrasts with cellular respiration – Photosynthesis is endergonic – Reduces CO2 to sugar – Cellular respiration is exergonic – Oxidizes sugar to CO2 Electrons are Electrons are pulled __________; pulled _______________; C is _________ O is _________ Potential energy increases 6 CO2 6 H2O Input of 6 O2 (carbon dioxide) (water) energy Glucose (oxygen) © 2014 Pearson Education, Inc. ▪ Light-dependent reactions – Produce O2 from H2O ▪ Calvin cycle reactions – Produce sugar from CO2 ▪ The reactions are linked by electrons – Released in the light-dependent reactions – When water is split to form oxygen gas – Then transferred to the electron carrier NADP+, forming NADPH © 2014 Pearson Education, Inc. ▪ The Calvin cycle Figure 10.2 then uses Sunlight (Light – These electrons energy) – The potential Light- energy in ATP capturing reactions – To reduce CO2 to (Chemical make sugars energy) Calvin cycle (Chemical energy) © 2014 Pearson Education, Inc. -
AP Biology-00001310.Cdr
® INTERNATIONAL ACADEMY OF SCIENCE Acellus AP Biology AP Biology Course Curriculum Unit 1 - Evolution Drives the Diversity and Unity of Life 46 Photosystems 1 Intro to AP Biology 47 Photophosphorylation 2 Nature of Science 48 Carbon Fixation (or Calvin Cycle) 3 Evidence for Evolution 49 Putting It Together - Photosynthesis and Respiration 4 Natural Selection - Descent with Modification 50 Feedback Mechanisms 5 Hardy - Weinberg Theorem 51 Cell Communication 6 Hardy - Weinberg Equilibrium Unit 6 - The Cell Cycle 7 Biological Evolution 52 Why Do Cells Divide? 8 Phylogeny - Evolutionary History 53 Origin of the Cell Cycle 9 Modern Synthesis Theory of Evolution 54 Chromosome Structure Unit 2 - Water Potential 55 Phases of the Cycle 10 Abiogenesis 56 Lab: Cell Division - Part I 11 Properties of Water 57 Lab: Cell Division - Part II 12 Organic Molecules 58 Variances in the Cell Cycle 13 Origin of Cells 59 Control of the Cell Cycle 14 Endosymbiosis 60 Uncontrolled Cell Cycle 15 Characteristics of Life 61 Lab: Cell Division - Part III 16 Cell Membranes - Structure Unit 7 - Mitosis and Meiosis 17 Selective Permeability 62 Two Types of Cell Reproduction 18 Diffusion and Cell Size 63 Meiosis Overview 19 Water Potential - Concentration Gradient 64 The Phases of Meiosis 20 Lab: Water Potential 65 Meiosis and Genetic Variation Unit 3 - Cell Structure 66 Lab: Cell Division - Part IV 21 Basic Cell Structure 67 Lab: Cell Division - Part V 22 Prokaryotes 68 Meiosis and Gamete Formation 23 Eukaryotes Unit 8 - History of Genetics 24 Mitochondria and Chloroplasts -
Photorespiration
Arjun Adhikari, Asst. Prof. M.C. College, Barpeta Photorespiration Photorespiration is a wasteful pathway that competes with the Calvin cycle. It begins when rubisco acts on oxygen instead of carbon dioxide. RuBP oxygenase-carboxylase (rubisco ), a key enzyme in photosynthesis. In the process of carbon fixation , rubisco incorporates carbon dioxide into an organic molecule during the first stage of the Calvin cycle . Rubisco is so important to plants that it makes upto 30% percent or more of the soluble protein in a typical plant leaf. But rubisco also has a major flaw: instead of always using CO 2 as a substrate, it sometimes picks up O2 instead. This side reaction initiates a pathway called photorespiration , which, rather than fixing carbon, actually leads to the loss of already -fixed carbon as CO 2. Photorespiration wastes energy and decreases sugar synthesis, so when rubisco initiates this pathway, it's committing a serious molecular mess. Rubisco binds to either CO 2 or O2 As we know , the enzyme rubisco can use either CO 2 or O2 as a substrate. Rubisco adds whichever molecule it binds to a five -carbon compound called ribulose -1,5-bisphosphate (RuBP). The reaction that uses CO 2 is the first step of the Calvin cycle and leads to the production of sugar. The reaction that uses O2 is the first step o f the photorespiration pathway, which wastes energy and "undoes" the work of the Calvin cycle . When a plant has its stomata, or leaf pores, open CO 2 diffuses in, O2 and water vapor diffuse out, and photorespiration is minimized. -
Spontaneous Generation & Origin of Life Concepts from Antiquity to The
SIMB News News magazine of the Society for Industrial Microbiology and Biotechnology April/May/June 2019 V.69 N.2 • www.simbhq.org Spontaneous Generation & Origin of Life Concepts from Antiquity to the Present :ŽƵƌŶĂůŽĨ/ŶĚƵƐƚƌŝĂůDŝĐƌŽďŝŽůŽŐLJΘŝŽƚĞĐŚŶŽůŽŐLJ Impact Factor 3.103 The Journal of Industrial Microbiology and Biotechnology is an international journal which publishes papers in metabolic engineering & synthetic biology; biocatalysis; fermentation & cell culture; natural products discovery & biosynthesis; bioenergy/biofuels/biochemicals; environmental microbiology; biotechnology methods; applied genomics & systems biotechnology; and food biotechnology & probiotics Editor-in-Chief Ramon Gonzalez, University of South Florida, Tampa FL, USA Editors Special Issue ^LJŶƚŚĞƚŝĐŝŽůŽŐLJ; July 2018 S. Bagley, Michigan Tech, Houghton, MI, USA R. H. Baltz, CognoGen Biotech. Consult., Sarasota, FL, USA Impact Factor 3.500 T. W. Jeffries, University of Wisconsin, Madison, WI, USA 3.000 T. D. Leathers, USDA ARS, Peoria, IL, USA 2.500 M. J. López López, University of Almeria, Almeria, Spain C. D. Maranas, Pennsylvania State Univ., Univ. Park, PA, USA 2.000 2.505 2.439 2.745 2.810 3.103 S. Park, UNIST, Ulsan, Korea 1.500 J. L. Revuelta, University of Salamanca, Salamanca, Spain 1.000 B. Shen, Scripps Research Institute, Jupiter, FL, USA 500 D. K. Solaiman, USDA ARS, Wyndmoor, PA, USA Y. Tang, University of California, Los Angeles, CA, USA E. J. Vandamme, Ghent University, Ghent, Belgium H. Zhao, University of Illinois, Urbana, IL, USA 10 Most Cited Articles Published in 2016 (Data from Web of Science: October 15, 2018) Senior Author(s) Title Citations L. Katz, R. Baltz Natural product discovery: past, present, and future 103 Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and R. -
A Comedy of Scientific Errors BOVINES
SACRED A COMEDY OF SCIENTIFIC ERRORS BOVINES DOUGLAS ALLCHIN, DEPARTMENT EDITOR William Shakespeare may well have foreshadowed the modern television experiment with balm, groundsel, and spinach. All modified the air to sitcom. His comic misadventures were expertly crafted. In A Comedy of support sustained burning. Animals, too, could breathe longer in the Errors, for example, twins (with twin servants), each separated at birth, treated air. Plants, Priestley had found, could restore the “goodness” of converge unbeknownst to each other in the same town. Mistaken iden- the air depleted by respiration or combustion. American correspondent tity leads to miscommunication. More mistaken identity follows, with Benjamin Franklin immediately perceived the global implications: plants more misdelivered messages and yet more misinterpretations. Hilarious help restore the atmosphere that humans and other animals foul. The consequences ensue. It is a stock comedic formula in modern entertain- system ensures our survival. That view fit neatly with Priestley’s religious ment. A character first makes an unintentional error. Then ironically, in belief in an intentionally designed (and rational) natural world. It was a trying to correct it, things only get laughably worse. remarkable discovery. For this and other work on airs, the Royal Society Science, we imagine, is safeguarded against such embarrassing in 1772 awarded Priestley the Copley Medal, then the most prestigious episodes. In the lore of scientists, echoed among teachers, science is honor in science. “self-correcting.” Replication, in particular, ensures that errors are Others were eager to build on Priestley’s discovery about plants and exposed for what they are. Research promptly returns to its fruitful tra- the restoration of air. -
Chemiosmosis Principle Versus Murburn Concept: Why Do Cells Need Oxygen? Deducing the Underpinnings of Aerobic Respiration by Mechanistic Predictability
Chemiosmosis principle versus murburn concept: Why do cells need oxygen? Deducing the underpinnings of aerobic respiration by mechanistic predictability Kelath Murali Manoj1*, Vidhu Soman2, Vivian David Jacob1, Abhinav Parashar3, Daniel Andrew Gideon4, Manish Kumar1, Afsal Manekkathodi5, Surjith Ramasamy6, Kannan Pakhirajan6 *1Satyamjayatu: The Science & Ethics Foundation, Snehatheeram, Kulappully, Shoranur-2 (PO), Kerala, India-679122. [email protected] 2Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, India-110016. 3Department of Biotechnology, Vignan’s Foundation for Science, Technology & Research, Vadlamudi, Guntur, India-522213. 4Department of Biotechnology & Bioinformatics, Bishop Heber College (Autonomous), Tennur, Tiruchirappalli, India-620017. 5Photovoltaics and Thin-film Solar Cells, Qatar Environment and Energy Research Institute, Hamad Bin Khalifa University, Ar-Rayyan, Qatar. 6Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam, India-781039. Abstract: The long-standing explanation for cellular respiration (mitochondrial oxidative phosphorylation, mOxPhos) in textbooks is proton-centric and involves the elements of Rotary ATP synthesis, Chemiosmosis principle, Proton pumps and Electron transport chain (in short, the RCPE model). Addressing certain lacunae in the RCPE model, an alternative scheme based on murburn concept was proposed in 2017 (Manoj, 2017). The new proposal is oxygen-centric in essence, and it advocates constructive roles for diffusible reactive oxygen species (DROS) in electron transfer reactions and ATP-synthesis. By the end of 2018, significant arguments and experimental evidences (in vitro, in situ, and in silico) had accumulated supporting the new mechanism. Herein, the authors compare the predictive capabilities of the two models. Theoretical concepts and expectations are detailed to differentiate the two models, and the correlations are cross-checked with the available data/information. -
Supply and Consumption of Glucose 6-Phosphate in the Chloroplast Stroma
bioRxiv preprint doi: https://doi.org/10.1101/442434; this version posted October 21, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Supply and consumption of glucose 6-phosphate in the chloroplast stroma 2 Alyssa L. Preiser1,2, Aparajita Banerjee2, Nicholas Fisher1, Thomas D. Sharkey1,2, 3 3 Running Title: Supply and consumption of plastidic glucose 6-phosphate 4 5 1 MSU-DOE Plant Research Laboratory, 210 Wilson Road, Michigan State University, East 6 Lansing, MI, USA 48824; 2 Department of Biochemistry and Molecular Biology, 603 Wilson 7 Road, Michigan State University, East Lansing, MI, USA 48824; Plant Resilience Institute, 8 Michigan State University, Plant Biology Laboratories, 612 Wilson Road, East Lansing, MI 9 USA 48824 10 11 Author for correspondence: 12 Thomas D. Sharkey 13 Tel: +1 (517) 353-4886 14 Email: [email protected] 15 16 Date of submission: October 12, 2018 17 Number of Tables: 4 18 Number of Figures: 12 (Figs 6, 7, 11, and 12 in color) and 5 supplemental figures 19 Word count: 5,998 1 bioRxiv preprint doi: https://doi.org/10.1101/442434; this version posted October 21, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 20 Supply and consumption of glucose 6-phosphate in the chloroplast stroma 21 Running Title: Supply and consumption of plastidic glucose 6-phosphate 22 Highlight 23 Glucose 6-phosphate stimulates glucose-6-phosphate dehydrogenase.