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| Hai Lama Altina Alta Li Ma Tu Na Maana Haiti |HAI LAMA ALTINA ALTAUS010076546B2 LI MA TU NA MAANA HAITI (12 ) United States Patent (10 ) Patent No. : US 10 ,076 , 546 B2 Henn et al. (45 ) Date of Patent: * Sep . 18 , 2018 (54 ) NETWORK - BASED MICROBIAL 3 ,608 ,030 A 11/ 1971 Grant COMPOSITIONS AND METHODS 4 ,077 ,227 A 3 / 1978 Larson 4 , 205 , 132 A 5 / 1980 Sandine 4 ,655 ,047 A 4 / 1987 Temple (71 ) Applicant : Seres Therapeutics , Inc ., Cambridge , 4 ,689 ,226 A 8 / 1987 Nurmi MA (US ) 4 ,839 ,281 A 6 / 1989 Gorbach et al. 5 , 196 , 205 A 3 / 1993 Borody (72 ) Inventors : Matthew R . Henn , Somerville , MA 5 ,425 ,951 A 6 / 1995 Goodrich 5 ,436 , 002 A 7 / 1995 Payne (US ) ; David N . Cook , Brooklyn , NY 5 , 443 , 826 A 8 / 1995 Borody (US ) ; Toshiro K . Ohsumi, Cambridge , 5 , 599 , 795 A 2 / 1997 McCann MA (US ) ; Mary - Jane Lombardo 5 . 648 , 206 A 7 / 1997 Goodrich McKenzie , Arlington , MA (US ) ; Kevin 5 ,951 , 977 A 9 / 1999 Nisbet et al. D . Litcofsky, Boston , MA (US ) ; Han 5 , 965 , 128 A 10 / 1999 Doyle et al. 6 ,589 , 771 B1 7 / 2003 Marshall Zhang , Oakton , VA (US ) ; John Grant 6 , 645, 530 B1 11/ 2003 Borody Aunins , Doylestown , PA (US ) ; David 7 ,427 ,398 B2 9 /2008 Baillon et al. Berry , Brookline , MA (US ) 7 ,628 , 982 B2 12 / 2009 Klaviniskis 7 , 632 , 520 B2 12 /2009 Khandelwal ( 73 ) Assignee : Seres Therapeutics , Inc ., Cambridge , 7 , 708 , 988 B2 5 /2010 Farmer 7 , 731 , 976 B2 6 / 2010 Cobb MA (US ) 7 , 763 , 420 B2 7 /2010 Stritzker et al . 7 , 981 , 411 B2 7 / 2011 Nadeau et al . ( * ) Notice: Subject to any disclaimer , the term of this NNN7 , 998 , 473 B2 8 / 2011 Boileau et al. patent is extended or adjusted under 35 8 , 021 , 654 B2 9 / 2011 Rehberger et al . U . S . C . 154 (b ) by 0 days . 8 , 034 , 601 B2 10 / 2011 Boileau 8 , 039, 006 B2 10 / 2011 Prato This patent is subject to a terminal dis 8 , 147, 482 B2 4 / 2012 Shimizu claimer. 8 ,187 , 590 B2 5 / 2012 Farmer 8 , 236 , 508 B2 8 / 2012 Mutharasan 8, 388 ,996 B2 3 / 2013 Gehling ( 21) Appl. No. : 14/ 777, 252 8 ,460 , 648 B2 6 /2013 Borody ( 22 ) PCT Filed : Mar. 17, 2014 (Continued ) ( 86 ) PCT No. : PCT/ US2014 / 030817 FOREIGN PATENT DOCUMENTS § 371 (c )( 1 ), | 006847 B1 4 / 2006 ( 2 ) Date : Sep . 15 , 2015 EN 0033584 A3 1 / 1981 (Continued ) ( 87) PCT Pub . No. : WO2014 /145958 PCT Pub . Date : Sep . 18 , 2014 OTHER PUBLICATIONS Aas , J . ,Gessert , C . E . , and Bakken , J . S . (2003 ). Recurrent Clostridium (65 ) Prior Publication Data difficile colitis : case series involving 18 patients treated with donor US 2016 /0030494 A1 Feb . 4 , 2016 stool administered via a nasogastric tube. Clinical Infectious Dis eases 36 ( 5 ) , 580 -585 . Abrams, R . S . , " Open - Label , Uncontrolled Trial of Bowel Steriliza Related U . S . Application Data tion and Repopulation with Normal Bowel Flora for Treatment of Inflammatory Bowel Disease, " Current Therapeutic Research , Dec . (60 ) Provisional application No . 61 / 798 , 666 , filed on Mar. 1997 , pp . 1001 - 1012 , vol. 58 , No . 12 . 15 , 2013 . Achtman , M . , and Wagner, M . (2008 ) . Microbial diversity and the (51 ) Int. Ci. genetic nature of microbial species . Nat . Rev . Microbiol. 6 ( 6 ) , A61K 35 / 74 ( 2015 . 01 ) 431 -440 . A61K 35 / 742 ( 2015 .01 ) (Continued ) A61K 35 / 741 ( 2015 .01 ) A61K 35 / 745 ( 2015 . 01 ) Primary Examiner — Oluwatosin A Ogunbiyi ( 52 ) U .S . CI. CPC . .. .. .. A61K 35 / 742 ( 2013 .01 ) ; A61K 35 / 74 ( 74 ) Attorney , Agent, or Firm — Fenwick & West LLP ( 2013 .01 ) ; A61K 35 / 741 ( 2013 .01 ) ; A61K 35 / 745 (2013 . 01 ) (57 ) ABSTRACT (58 ) Field of Classification Search None Provided are therapeutic compositions containing combina See application file for complete search history . tions of bacteria , for the maintenance or restoration of a healthy microbiota in the gastrointestinal tract of a mam ( 56 ) References Cited malian subject, and methods for use thereof. U . S . PATENT DOCUMENTS 3 ,009 , 864 A 11/ 1961 Gordon - Aldterton et al . 12 Claims, 21 Drawing Sheets 3 ,228 ,838 A 1 / 1966 Rinfret Specification includes a Sequence Listing . US 10 ,076 ,546 B2 Page 2 (56 ) References Cited WO WO 1997 /009886 AL 3 / 1997 Wo WO 98 / 26787 A 6 / 1998 U . S . PATENT DOCUMENTS WO WO 2000 /010582 A2 3 / 2000 WO WO 01/ 93904 Al 12 / 2001 8 , 906 ,668 B2 12 / 2014 Henn et al. wo WO 2002 /007741 A1 1 /2002 9 , 011, 834 B14 /2015 McKenzie et al. WO WO 2005 / 110445 A2 11 / 2005 9 ,028 , 841 B2 5 / 2015 Henn et al . Wo WO 2006 / 012586 A2 2 / 2006 9 , 180 , 147 B2 11 / 2015 McKenzie et al . wo WO 2007/ 036230 A1 4 / 2007 9 ,408 , 872 B2 8 / 2016 Borody wo WO 2008 / 076696 A2 6 / 2008 9 , 446 , 080 B2 9 / 2016 McKenzie et al . WO WO 2008 /083157 A2 7 / 2008 9 , 808, 519 B2 11/ 2017 Honda et al . WO WO 2010 /030997 Al 3 / 2010 2001/ 0036453 Al 11/ 2001 Reid WO WO 2010 / 062369 A2 6 / 2010 2004 / 0028689 Al 2 / 2004 Borody WO WO 2010 / 124387 AL 11 / 2010 2004 /0170617 A1 9 / 2004 Finegold WO WO 2010 / 151842 A2 12 / 2010 2005 /0048515 Al 3 / 2005 Garner WO WO 2011 / 005756 Al 1 / 2011 2005 / 0180962 Al 8 / 2005 Raz WO WO 2011 /022542 A2 2 / 2011 2006 / 0046246 A1 3 / 2006 Zeng et al. WO WO 2011022660 A1 2 / 2011 2006 / 0188523 Al 8 / 2006 Pei WO WO 2011 / 033310 A1 3 / 2011 2006 / 0233830 A110 / 2006 Wong WO WO 2011 / 043654 A1 4 / 2011 2007 /0141139 Al 6 /2007 Vandenberg WO WO 2011 /046616 A3 4 / 2011 2009 /0197249 Al 8 / 2009 Gillevet WO WO 2011 /060123 A1 5 /2011 2010 /0074872 A 3 / 2010 Blaser et al . WO WO 2011 /094027 Al 8 / 2011 2010 / 0215745 Al 8 / 2010 Lazzari et al. wo WO 2011 / 103123 A2 8 / 2011 2011 / 0081320 A1 4 / 2011 Westall et al. WO WO 2011/ 107482 A2 9 / 2011 2011 /0113863 Al 5 /2011 Fuhrmann et al . WO WO 2011/ 113801 A1 9 / 2011 2011 / 0189132 A1 8 / 2011 Garner et al . WO WO 2011107481 A2 9 / 2011 2011 / 0280840 A1 11 /2011 Blaser WO WO 2011 / 152566 A2 12 / 2011 2012 / 0020950 A1 1 / 2012 Davis et al . WO WO 2012 / 009712 A2 1 / 2012 2012 / 0021429 Al 1 / 2012 Rublee WO WO 2012 / 016287 A2 2 /2012 2012 / 0021921 A1 1/ 2012 Scott WO WO 2012 /045150 A1 4 / 2012 2012 /0058094 A1 3 / 2012 Blaser WO WO 2012 /064981 A2 5 / 2012 2012 /0064592 A1 3 / 2012 O 'Mullan et al . WO WO 2012 / 116289 A2 8 / 2012 2012 /0128633 A1 5 / 2012 Veiga et al . WO WO 2012 / 122478 AL 9 / 2012 2012 /0128634 Al 5 / 2012 Veiga WO WO 2012 / 122522 A2 9 / 2012 2012 /0148629 Al 6 / 2012 Holvoet et al. WO WO 2012 / 142605 Al 10 / 2012 2012 /0149584 A1 6 / 2012 Olle WO WO 2012 / 148991 A1 11 / 2012 2012 /0165215 A1 6 / 2012 Andersen WO WO 2012 / 159023 A2 11 / 2012 Lutkokalbilindi. WO WO 2013 /019896 A12 / 2013 2012 /0177650 A1 7 /2012 Borody 2012 /0207726 A 8 / 2012 Lipkin WO WO 2013 /032328 Al 3 / 2013 2012 /0238468 A1 9 / 2012 Tuk WO WO 2013 / 037067 A1 3 / 2013 2012 /0264637 A1 10 / 2012 Brodie WO WO 2013 / 037068 A1 3 / 2013 2012 / 0276149 AL 11/ 2012 Littman WO WO 2013 / 050792 Al 4 / 2013 2012 / 0276201 A 11 / 2012 Trachtman wo WO 2013 /053836 A1 4 / 2013 2012 / 0315249 Al 12 / 2012 Olmstead WO WO 2013 / 080561 A1 6 / 2013 wo WO 2013 / 166031 AL 11 / 2013 2013 / 0017999 Al 1 / 2013 Fremont WO WO 2013 / 171515 A1 11/ 2013 2013 / 0022575 A1 1 / 2013 Cassity WO WO 2013 / 176774 Al 11 / 2013 2013 / 0045274 Al 2 / 2013 Hlavka Wo WO 2014 / 082050 Al 5 / 2014 2013 /0045874 AL 2 / 2013 Ehrlich WO WO 2015 / 095241 A2 6 / 2014 2013 /0121968 A1 5 / 2013 Quay WO WO 2014 / 121298 A2 8 / 2014 2013 /0149339 Al 6 / 2013 Honda WO WO 2014 / 121301 A1 8 / 2014 2013 /0149375 AL 6 / 2013 Geall WO WO 2014 / 121302 A2 8 / 2014 2013 / 0266539 A1 10 / 2013 Borody WO WO 2014 / 121304 Al 8 / 2014 2014 / 0045744 A1 2 / 2014 Gordon wo WO 2014 / 145958 A2 9 / 2014 2014 /0147417 Al 5 / 2014 Sadowsky et al. WO WO 2014 / 153194 A2 9 / 2014 2014 /0147425 A1 * 5 / 2014 Henn .. .. .. .. .. .. A61K 38 / 13 WO WO 2015 /077794 AL 5 /2015 424 / 93 .41 2014 /0199281 A1 7 / 2014 Henn et al . 2014 /0342438 A1 11 / 2014 Allen - Vercoe et al. OTHER PUBLICATIONS 2015 /0190435 A1 7 /2015 Henn et al. Accoceberry , I. et al. , " One - Step Purification of Enterocytozoon Bieneusi Spores from Human Stools by Immunoaffinity Expanded FOREIGN PATENT DOCUMENTS Bed Adsorption ,” Journal of Clinical Microbiology , May 2001, pp . 1974 - 1951 , vol. 39 , No . 5 . ?? 0433299 A4 4 / 1992 Allen - Vercoe , E ., Reid , G ., Viner, N . , Gloor, G . B ., Hota , S ., Kim , P . , EP 1107772 B1 4 / 2006 Lee , C ., O 'Doherty , K ., Vanner , S . J ., Weese , J. S ., et al. ( 2012 ) . A EP 1631312 B1 9 / 2008 Canadian Working Group report on fecal microbial therapy : micro EP 2337569 A2 6 / 2011 bial ecosystems therapeutics . Can . J . Gastroenterol. 26 ( 7 ) , 457 -462 . EP 2338989 A1 6 / 2011 Allen - Vercoe , E . , Strauss, J . , and Chadee , K . ( 2011) . Fusobacterium EP 2519108 A1 11 / 2012 nucleatum : an emerging gut pathogen ? Gut Microbes 2 ( 5 ) , 294 -298 .
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