The Synthesis and Structure of C4 Symmetric Resorcinarenes
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Department of Applied Chemistry The Synthesis and Structure of C4 Symmetric Resorcinarenes Matthew J McIldowie This thesis is presented for the Degree of Doctor of Philosophy of Curtin University of Technology October 2007 Declaration To the best of my knowledge and belief this thesis contains no material previously published by any other person except where due acknowledgment has been made. This thesis contains no material which has been accepted for the award of any other degree or diploma in any university. Signature: …………………………………………. Date: ………………………... Contents Abstract iii Acknowledgements iv Preface v 1.0 A brief review of Cn Symmetric calixarenes and resorcinarenes. 1 1.1 The C1 dissymmetric 7 1.1.1 Calixarene based 7 1.1.2 Resorcinarene based 13 1.2 The C2 dissymmetric 14 1.2.1 Calixarene based 14 1.2.2 Resorcinarene based 19 1.3 The C4 dissymmetric 20 1.3.1 Calixarene based 20 1.3.2 Resorcinarene based 22 1.4 Outlook 33 2.0 Synthesis and characterisation of C4 dissymmetric resorcinarenes 34 2.1 Mechanism of resorcinarene formation 39 2.2 Alkylation of the octahydroxy resorcinarenes 48 2.3 Physical and spectroscopic properties of the C4 resorcinarenes 49 2.4 Chirality of the resorcinarenes 51 2.5 Structure of the resorcinarenes 52 2.6 Functionalisation of the resorcinarene phenols 55 2.6.1 Formation and structure of the resorcinarene esters 56 2.6.2 Alkylation of the C4 dissymmetric resorcinarenes 58 2.7 Synthesis of C4 dissymmetric resorcinarenes using other aromatics 62 2.8 Experimental 65 i 3.0 Resolution of C4 dissymmetric resorcinarenes by formation of their diastereomeric camphorsulfonates 82 3.1 Synthesis of the camphorsulfonyl derivatives 87 3.2 Resolution of the tetracamphorsulfonate diastereomers 87 3.3 Physical and spectroscopic properties of the tetra- camphorsulfonates 88 3.3.1 Crystallinity and solubility 88 3.3.2 N.m.r. spectroscopic and optical rotation properties 88 3.4 Structure and absolute stereochemistry 91 3.5 Hydrolysis of the camphorsulfonates 93 3.5.1 Physical and spectroscopic properties of the enantiomerically pure resorcinarenes 94 3.5.1.1 M.p., crystallinity, solubility 94 3.5.1.2 N.m.r. spectroscopic and optical rotation properties 95 3.6 Experimental 97 4.0 Resolution of C4 dissymmetric resorcinarenes by formation of their diastereomeric amides 104 4.1 Synthesis of the diastereomeric amide derivatives 107 4.1.1 Synthesis by direct aminolysis 107 4.1.2 Synthesis by the acid chloride route 108 4.1.3 Synthesis by attachment of a preformed amide moiety 110 4.2 Resolution of the resorcinarene amide diasteromers 111 4.3 Physical and spectroscopic properties of the resorcinarene amides 112 4.3.1 M.p., crystallinity and solubility 112 4.3.2 N.m.r. spectroscopic and optical rotation properties 112 4.4 Structure and absolute stereochemistry 115 4.5 Attempted hydrolysis of the amide groups 117 4.6 Experimental 118 ii 5.0 Pyridine functionalised C4 symmetric resorcinarenes 122 5.1 Preparation of the pyridine functionalised resorcinarenes 123 5.2 Structure of the pyridine functionalised resorcinarenes 125 5.3 Chirality and resolution 134 5.3.1 N.m.r. spectroscopy and interaction with chiral acids 134 5.3.2 Resolution by fractional crystallisation 136 5.4 Interaction with transition and soft metal cations 137 5.5 Experimental 145 6.0 References 149 7.0 Appendices 163 iii Abstract This study investigates methods for the synthesis and resolution of chiral resorcinarenes. The first direct synthesis of C4 dissymmetric resorcinarenes by the Lewis acid catalysed condensation of 3-alkoxyphenols and alkyl aldehydes was developed.The chirality of these novel resorcinarenes was demonstrated by nuclear magnetic resonance spectroscopy (n.m.r.) and enantioselective HPLC. The structure and physical properties of the new materials were characterised by several methods including X-ray crystallography. Resolution of the chiral resorcinarenes was achieved on a multi-gram scale by either formation of their diastereomeric camphorsulfonate esters or diastereomeric “amide” derivatives followed by flash chromatographic separation. The absolute configuration of one resorcinarene camphorsulfonate diastereomer was determined by X-ray crystallography and the stereochemistry of the related diastereomers assigned based on spectroscopic and chromatographic properties. Hydrolysis of the resolved resorcinarene camphorsulfonate diastereomers afforded the C4 symmetric resorcinarenes of known absolute stereochemistry. The absolute configuration of one resorcinarene “amide” diastereomer was also determined by X-ray crystallography. Functionalisation of the resorcinarene racemates with 2- and 3-picolyl ethers afforded a number of resorcinarene based pyridine ligands. The complexation behaviour of the ligands was examined and X-ray crystallographic data obtained for complexes with silver(I) and copper(II) salts. A significant proportion of the work described in this thesis has been published in four separate peer reviewed papers which have been attached as appendicies 12–15. iv Acknowledgments I would like to make use of this opportunity to express my deepest gratitude to those who have helped me make this thesis possible. First of all, I would like to thank my family for their encouragement and regular enquiries on the progress of my thesis which in turn motivated me to complete it. My sincerest thanks to Associate Professors Mauro Mocerino and Mark Ogden, for their generosity and wisdom. Their knowledge and continuous optimism has been vital to the completion of this document. I greatly appreciate their patience during the proof reading of this thesis, which could be rather daunting at times. My gratitude also goes to Prof. Harry Heaney, Prof. Allan White, Dr Brian Skelton, Joyce Wong and Allan Oliveira, for their assistance and contribution to this project. Finally, special thanks to my patient and loving partner, Lihui, who has been a great pillar of strength throughout. Without her support and encouragement, I would not have kept my sanity and this thesis would not have existed. v Preface – structural representation of resorcinarenes and their chirality Many forms of resorcinarene representation have developed over the relatively brief period which they have been studied. To avoid confusion the particular depictions of resorcinarenes that will be used throughout this document are outlined here. The most unambiguous representations of the resorcinarenes and their chirality are the three-dimensional depictions shown in figure 1. In this case the crown, chair and diamond conformations are shown. These are closely related to the calixarene cone, partial cone and 1,2-alternate conformations respectively. OH HO HO OH HO OH OH HO OH HO HO OH HO OH HO OH OH HO HO OH HO OH OH HO crown chair diamond Figure 1 – Three dimensional depictions of the crown, chair and diamond conformations of resorcinarenes. However, due to the cumbersome nature of these pictures (particularly with additional functionality present) and the exceptional effort required to construct them in a clear manner, they are generally not used. Accordingly, the reader will note that where a molecule of significant complexity is being described it shall be as the “flat” type diagram shown in figure 2. vi Figure 2 – “Flat” style depictions of the crown, chair and diamond conformations of resorcinarenes. In these cases the diagram will represent the resorcinarene molecule viewed from above the cavity with the orientation of the alkyl chains indicated using wedged bonds in the usual manner. The focus of resorcinarene research predominantly revolves around the crown isomer, as this is generally the most readily obtainable. For convenience, and for the sake of efficient usage of space, the crown isomer shall also be represented in the bracketed form shown below. HO OH H 4 4 R OH crown cone Figure 3 - “Simplified” depictions of the resorcinarene crown conformation shown with “all axial” alkyl groups and the calixarene cone conformation. This is very similar to the commonly used depiction of the calixarene cone (also shown). However, unlike the calixarenes, the resorcinarenes possess a carbon centre with the potential for chirality. This added complication may be overcome by applying the conventions shown in figure 4. vii CH3O OH CH3O OH HO OCH3 HO R R OCH3 HO OCH3 R R H (C) CH O 4 3 HO OCH3 OH R R CH3O OH R R R (A) HO OCH3 (B) CH3O OH H (D) 4 R Figure 4 – Four depictions describing the absolute stereochemistry of a single chiral resorcinarene enantiomer. The third diagram (C) is shown with the alkyl groups (R) in the all pseudo axial position and the methine proton projecting “out of the page” to indicate that the resorcinarene is being viewed from a position “outside” of the resorcinarene annulus. This depiction has the advantage that the absolute stereochemistry of the resorcinarene is described with a relatively efficient diagram. The resorcinarene enantiomer (C) is described equally well by the corresponding structure (D) viewed from “inside the annulus”. The racemate of a chiral resorcinarene is perhaps best represented (when using the simplified drawing convention) with the two individual enantiomers drawn separately in the fashion shown in figure 5 (A) where both are viewed from the same perspective (from outside the annulus in this case). Figure 5 – Simplified depictions of the resorcinarene racemate. However, this also can become cumbersome in schematics. Where convenient, the racemate shall be drawn with a wavy bond to the methine proton (B), to distinguish it viii as such. This is intended to represent the two enantiomers, one being viewed from within the annulus and the other from without (C). In 2002, IUPAC published new recommendations for the nomenclature of phanes with specific reference to the calixarene ring system1. This new system completely replaced the previous long-winded alkene cyclic alkene based nomenclature, obviating the need for a shortened independant nomenclature system for the calixarenes. It also brings calixarene numbering in to line with already well established alkane and ring system nomenclature.