E v o l D i r
April 1, 2015
Month in Review
Foreword
This listing is intended to aid researchers in population genetics and evolution. To add your name to the directory listing, to change anything regarding this listing or to complain please send me mail at [email protected]. Listing in this directory is neither limited nor censored and is solely to help scientists reach other members in the same field and to serve as a means of communication. Please do not add to the junk e-mail unless necessary. The nature of the messages should be “bulletin board” in nature, if there is a “discussion” style topic that you would like to post please send it to the USENET discussion groups. Instructions for the EvolDir are listed at the end of this message.
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Foreword ...... 1
Conferences ...... 2
GradStudentPositions ...... 23
Jobs ...... 47
Other ...... 66
PostDocs ...... 75
WorkshopsCourses ...... 117
Instructions ...... 135
Afterword ...... 135 2 EvolDir April 1, 2015
Conferences
Amsterdam PlantGenomeEvolution Sep6-8 ...... 2 SaoPaulo Evolution Jun26-30 MinorityAirfare . . . . . 13 Berkeley EvoDevo Aug5-9 ...... 3 SaoPaulo Evolution Jun26-30 MinorityStudentTravel Bologna ItalianSocEvolutionaryBiol Aug31-Sep3 . . . .3 13 Cairns Birdsong Aug9-14 ...... 4 Saskaton CanSocEcoEvol May22-24 EarlyBird . . . . .14 Cairns MatingConflict Mar16 ...... 4 Scotland EMPSEB StudentEvolutionaryBiology Sep8- Cambridge EvolutionaryGenomics Mar17 ...... 4 12 ...... 14 Crete EvolutionaryBiol Oct7-11 ...... 5 StAndrews DrosophilaEvolution May8 ...... 14 Dublin Bioinformatics Jul10-11 ...... 5 Stockholm MammalBiol Aug16-22 Registration . . . .15 Edinburgh QuantitativeGenetics Mar18 ...... 6 Sydney Hawkesbury BiologyTephritidFlies Apr2 . . . 15 Germany IBAC2015 VocalisingFemales Sep7-12 . . . . .7 Tours France EukaryoticGenomes Jul8-10 ...... 16 Guelph Barcoding Aug18-21 ...... 7 Tubingen PopBio May14-16 ...... 16 KansasStateU ArthropodGenomics Jun17-19 Deadline- Turkey EcolEvolutionaryBiol Aug6-7 Registration . 17 Mar9 ...... 8 UBrno PlantGenetics Sep7-10 ...... 17 Krakow Poland EvolutionaryPhysiology Aug23-28 . .9 UCalifornia Berkeley EvoDevo Aug5-9 ...... 18 Montreal PopulationCohorts Apr16-17 ...... 9 UCalifornia Berkeley EvoDevo Aug5-9 Deadlines . . 18 NESCent BiodiversityDisease May4-6 CallApplicants UHuddersfield ProtistEvolution Apr15-17 ...... 19 10 ULisbon ReticulateEvolution Jul17 ...... 19 Paris EvolutionaryAdaptation Jul8-10 ...... 10 UMichigan AnnArbor PopGenet Jul25-26 ...... 19 Paris MathModelsEcolEvol Jul8-10 Registration . . . 11 UMichigan ECSS Microbiome Ecol Evol Mar28 . . . .20 Paris MMEE AdaptationInAChangingEnvironment UMichigan SocSystematicBiol May20-22 ...... 21 Jul08-10 ...... 11 Vienna SMBE2015 Jul12-16 EarlyBird ClosingThisSun- Paris MMEE LinkageAndTheLimitstoSelection Jul08-10 day ...... 22 12 Zurich EvolMed Jul30-Aug1 ...... 22 Peru Biodiversity Oct15-18 ...... 12
It is our pleasure to announce the third Current Opinion Conference on Plant Genome Evolution, to be held in Amsterdam, 6-8 September 2015. We are delighted to Amsterdam PlantGenomeEvolution be holding this (now biannual) event again after a very Sep6-8 successful first and second meeting in 2011 and 2013 where renowned plant researchers gave inspiring talks and where many discussed their latest research in the *Plant Genome Evolution 2015* A Current Opinion field. Conference Amsterdam, The Netherlands 6-8 Septem- For the 2015 meeting, we are even more ambitious than ber 2015 the previous years and are trying to put together an For full conference details visit http://- even more exciting programme focused on (new) plant www.plantgenomeevolution.com *Submit abstracts by genomes, natural variation, domestication, epigenetics, 3 April 2015* April 1, 2015 EvolDir 3 and systems biology, of course all with a strong emphasis All details about registration, accommodation op- on evolution and evolutionary aspects. tions, child care services, and the conference pro- This third meeting will present the unique opportunity gram are available at the following website: http:/- to meet and discuss with colleagues, get updated on /www.evodevopanam.org/meetings–events.html Sup- the newest developments and insights in plant genome port the Society and Become a Member!! To learn more evolution, and will provide unique possibilities to net- about PASEDB, visit the following website: http://- work and discuss collaborations. We are delighted to www.evodevopanam.org/ The Organizing Committee and the PanAm SEDB Executive Council look forward announce that Prof. Gerald A. Tuskan (Oak Ridge Na- tional Laboratory and JGI, USA) has agreed to deliver to welcoming you to Berkeley in August! the plenary lecture on Sunday, opening the meeting. Chelsea Specht
The University of Bologna, the Department of Biological Geological and Environmental Sciences and the Molec- ular Zoology Lab (MoZoo Lab) invite you at the 6th Berkeley EvoDevo Aug5-9 Congress of the Italian Society of Evolutionary Biology that will be held in Bologna (Italy) from August 31 to September 3, 2015.
Registration for the inaugural meeting of the Pan Amer- You can find all the informations at the Conference web- ican Society for Evolutionary Developmental Biology < site www.evoluzione2015.net The 6th SIBE congress http://www.evodevopanam.org/ > is open! Mark your wants to specifically promote exchanges and discussion calendars for the meeting dates, 5-9 August, 2015. Only among Italian and non-Italian evolutionary Biologists, a few spots left!!! with particular attention to young researchers. Sym- posia will cover different topics, including the most *The registration deadline is April 1, 2015. Click up-to-date thematic areas of Evolutionary Biology. A **here* < http://www.evodevopanam.org/meetings– paricular attention will also be given to the dissem- events.html >* to register.* ination of the nature and social role of evolutionary Follow us: @EvoDevoPanAm biologists to general public. Join Us: #EvoDevo15 The Conference is organized into 7 thematic symposia covering most of the fields of Evolutionary Biology. The A few meeting highlights: Conference warmly welcomes all professional and non- - *Confirmed speakers: *Chris Amemiya, Alexa Bely, professional Evolutionary Biologists, as well as teachers Sean Carroll, Rachel Collin, Kim Cooper, Tamara Franz- and science writers. It is also particularly addressed to Odendaal, Matt Gibson, Angela Hay, Vivian Irish, young students and scientists and, through an informal Catherine Linnen, Mark Martindale, Jose Xavier Neto, and easy going atmosphere, wants to promote exchanges Natalia Pab´on-Mora(Early Career Award Recipient), and synergies among scientists and/or amateurs. Richard Palmer, Rudy Raff (Pioneers Award recipient), The Congress venue is conveniently located in the Uni- Bob Reed, Matt Rockman, Neelima Sinha, Stacey D. versity Area, which is close to the historic part of the Smith, Ralf Sommer, Mansi Srivastava, James Umen beautiful city of Bologna, the house of the oldest Uni- - Published abstracts veristy in the world. - Posters on display throughout the entire meeting We hope to see you in all in Bologna - Poster prizes for PhD students and postdocs The Organizing Committee of the 6th Congress of the - Child Care reimbursement available!! Bring the whole Italian Society of Evolutionary Biology family. Marco Passamonti
Cairns Birdsong Aug9-14 Cairns MatingConflict Mar16
REMINDER: ABSTRACT DEADLINE APPROACH- For those of you interested in the role of conflict in ING! mating and reproduction, please consider registering As a part of the Behaviour 2015 conference that will be for the “Costs and Conflict in Reproduction” sympo- held in Cairns, Australia, on 9-14 August 2015, we are sium at this year’s Behaviour 2015 in Cairns (http:/- pleased to announce a symposium on the topic “Female /www.behaviour2015.org/). If you wish to submit an song: fitness costs and benefits”. abstract, follow the instructions under “Symposium Details” (http://www.behaviour2015.org/symposium- Symposium summary: details/). Please note that abstracts are due by March Bird song, traditionally regarded as primarily a male 16. trait, is in fact widespread among female songbirds and id #19662 Costs and Conflict in Reproduction Conflict was likely present in the ancestor of modern songbirds. between individuals is ubiquitous in nature, and stems These recent findings challenge the view that sexual from costs incurred by one or more players in an interac- dimorphism in the expression and complexity of song is tion when their optima do not align. Self-promotion and largely the outcome of sexual selection on males. It is cost avoidance help to shape all manner of behavioural now clear that understanding the evolution of bird song interactions - including those associated with reproduc- requires explaining variation within and among species tion. Conflict can manifest among members of the same in the expression and complexity of female song. To sex (e.g., male-male sperm competition, queen/worker do this, we need a better understanding of the nature conflict), or between the sexes, where the reproductive of variation in female song in different contexts and optima of females and males differ (sexual conflict). systems, as well as the fitness costs and benefits of vari- Additionally, when species with poor mate recognition ation in the expression and complexity of female song. systems occur sympatrically, interspecies interactions The aim of this symposium is to draw together current may also impose significant costs to one or both players research on female song with the goal of understanding (reproductive interference). This symposium aims to the fitness costs and benefits of the diversity of female focus on different facets of antagonism in the context singing behaviour apparent among songbirds. of reproduction, to gain insights into conflict and con- Abstract submissions for oral presentations can be sub- flict resolution gleaned from different perspectives and mitted until 16 March 2015: across hierarchical levels (i.e., within sexes, between sexes, between populations, between species). http://www.behaviour2015.org/symposium-details/ For more details, please don’t hesitate to contact us: Thank you, Michelle L Hall - hall.mATunimelb.edu.au Nikolai Tatarnic & Leigh Simmons Naomi E Langmore - naomi.langmoreATanu.edu.au Nikolai Tatarnic
Josephine Pemberton
Dear Colleagues, It is our pleasure to announce that the 6th International Barcode of Life Conference will be held at the University of Guelph, Canada, from August 18-21, 2015. This biannual conference series showcases the latest sci- entific achievements and socio-economic implications of work conducted by the DNA barcode research commu- nity. The theme of the 6th Conference, Barcodes to 8 EvolDir April 1, 2015
Volkoff, INRA (UMR1333), Montpellier 1 University, France The symposium focuses on new insights gleaned from analyzing arthropod genomes and is designed for scien- KansasStateU ArthropodGenomics tists interested in genomic studies of Arthropods, both Jun17-19 DeadlineMar9 model organisms and those of agricultural or health relevance. The program will include platform presenta- tions, welcome reception, Genome Train Workshop, An- *-* Ninth Annual Arthropod Genomics Symposium *-* notation Caf´e,and arthropod genomics-related poster June 17, 2015 to June 19, 2015 K-State Alumni Center, sessions. A few poster abstract submissions will be Kansas State University Manhattan, Kansas Symposium selected for platform presentations. Postdoctoral, grad- Website: www.ksu.edu/agc ABSTRACT DEADLINES uate, and undergraduate students are also encouraged IN 2015 Monday, March 9 - If you DO wish your ab- to attend. Sessions conclude Friday evening, followed stract to be considered for an oral presentation/General by an optional evening at Konza Prairie Biological Sta- Session talk. Monday, March 9 - If you DO wish your tion < http://kpbs.konza.k-state.edu/ > with dinner abstract to be considered for a poster presentation at and live music by the Red State Blues Band < http://- the IGTRCN pre-meeting workshop. Wednesday, May www.redstatebluesband.com >. 20 - If you do NOT wish for your poster abstract to be *-* Pre-Symposium Workshop *-* INSECT GENETIC considered for oral presentation and DO want to present TECHNOLOGY workshop June 17, 2015 (Wednesday a poster. morning and afternoon) Robust protocols to manipulate TRAVEL GRANTS AVAILABLE Two separate travel genes and genomes have not yet been developed for most grants are available to attend the meeting: 1) IGT-RCN insects other than Drosophila melanogaster, and this - sponsored by the Insect Genetic Technology Research shortfall is limiting research progress in many aspects of Coordination Network. arthropod genomics. The NSF-RCN on Insect Genetic Technologies (IGTRCN: 2014-2019; igtrcn.org) seeks to Deadline: March 9, 2015 2) Eck Institute Travel Grants remedy this problem by facilitating the communication for Vector Biologists - sponsored by the Eck Institute of best practice and new techniques among arthropod for Global Health. genomicists. Deadline: March 30, 2015 Additional information is This IGTRCN-sponsored workshop will comprise (1) available on the Travel Grants page of the symposium talks that showcase the latest genetic technologies, (2) website. discussion sessions for exchange of ideas and solutions REGISTRATION Please register online at the Sym- for effective insect genetic engineering, and (3) posters. posium website, http://www.k-state.edu/agc! Early Proposals from the workshop will be integrated into bird deadline for reduced fees is April 10. Deadline for the IGTRCN program of hands-on practical workshops, general registration is June 5. fellowships, and the IGTRCN KnowledgeBase. Early- career researchers are particularly encouraged to present SPEAKERS Keynote Speaker: David A. O’Brochta, their research at this workshop. A limited number of Institute for Bioscience and Biotechnology Research travel grants to attend the workshop are available for & Department of Entomology, University of Maryland early stage investigators. For more information on poster College Park abstract and travel grant submission for the workshop, Featured Speakers: +Michelle Cilia, USDA-ARS, Boyce go to http://www.k-state.edu/agc/symposium level/- Thompson Institute for Plant Research, Cornell Uni- workshop/index.html . ANNOTATION CAFA˜ The versity, USA +Martin J. Donnelly, Liverpool School i5k Workspace@NAL and the Web Apollo development of Tropical Medicine and the Wellcome Trust Sanger team are hosting an Annotation Caf´eduring poster ses- Institute, UK +Rosemary G. Gillespie, University of sions where both experienced and novice annotators California, Berkeley, USA +Sijun Liu, Iowa State Uni- can ask questions to an expert, share curation advice versity, USA +Frank Lyko, German Cancer Research with other annotators, or chat with scientists from the Center, Heidelberg, Germany +Duane McKenna, Uni- National Agricultural Library and Web Apollo teams versity of Memphis, USA +Armin P. Moczek, Indiana about the annotation services they provide. University, USA +Amanda J. Moehring, Western Uni- TENTATIVE PROGRAM for SYMPOSIUM & WORK- versity, Ontario, Canada +Daniel E. Neafsey, Broad SHOPS Institute of MIT and Harvard University, USA +Greg Ragland, Kansas State University, USA +Anne-Nathalie / April 1, 2015 EvolDir 9
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Krakow Poland Montreal PopulationCohorts EvolutionaryPhysiology Aug23-28 Apr16-17
International Congress of Comparative Physiology and Registrations < http://- Biochemistry has been organized every four years since www.symposium.cartagene.qc.ca/ > are now open for 1983. ICCPB 2015 in Krakow, Poland puts emphasis CARTaGENEs < http://symposium.cartagene.qc.ca/ on the integrated view of organisms “From Molecules > Workshop and Symposium on Cohorts, Big Data and to Macrophysiology”. Genomics and Medicine. The meeting will be held in 23-28 August 2015 at Population cohorts are created with significant public the Jagiellonian University, where Nicolaus Copernicus or private investment and, in some countries, are the started academic education that led him to revolution- primary resource for research and health. Studies with izing ideas about the Universe. The deadline for early increasingly larger numbers of individuals reflecting the registration is 14^th April. changing population demographic and environment are Go to: www.iccpb2015.confer.uj.edu.pl < http://- deemed necessary to draw meaningful and actionable www.iccpb2015.confer.uj.edu.pl > conclusions about the underlying genetic and environ- mental determinants of phenotypes and chronic diseases. Thirty thematic Symposia, including an Open Session Issues around genomic, phenotypic and clinical data will cover a wide range of topics: acquisition, data storage, and managing access from Molecular and integrative physiology: homeostasis, hor- population cohorts have been, in part, addressed by mones, genomes, trade-offs, telomeres, longevity many of the existing large regional and national popu- Neurophysiology: olfaction, chemical ecology, photore- lation research programs. Currently, data integration, ception, enteric nervous system, monoamines interoperability, harmonization and data sharing are recognized as important goals. Physiology of biological rhythms: circadian clocks, pho- toperiodism To highlight these programs, the research opportuni- ties and address challenges, CARTaGENE will host a Energetics and temperature: avian flight, cardiorespi- symposium dedicated to Population Cohorts, Big Data ratory functions, endothermy, performance, metabolic and Personalized Genomics. Leaders and representa- scaling, body size, cell size, oxygen limitation, pheno- tives of large regional, national and international cohorts typic plasticity, seasonality from Europe, the US and Canada will present and dis- Stress physiology: cellular stress, oxidative stress, life cuss findings, analyses, and challenges associated with history, innate and acquired immunity Miscellaneous: discovery, data integration, analysis, management and fatty acids, actin and actin-binding proteins, statistical implementation. analysis of physiological data, biosensors** The Symposium will take place at the historic Windsor Dr. Marcin Czarnoleski Hotel in downtown Montreal, the 16-17 April, 2015. Jagiellonian University Institute of Environmental Sci- Speakers include: Sonia Anand, Director, The Al- ences Gronostajowa 7, Krakow 30-387 Poland phone: liance for Healthy Hearts and Minds, McMaster Uni- (+48)126645203 email: [email protected] versity Philip Awadalla, Director CARTaGENE and the Canadian Data Integration Centre, OICR, Mon- Dr hab. Marcin CzarnoA˚Aski¨ treal Rex Chisholm, Vice-Dean Northwestern Univer- Instytut Nauk o Arodowisku˚ Uniwersytet JagielloAski˚ sity and eMERGE Christine desRosiers, Director of ul. Gronostajowa 7, Krak´ow30-387 tel: 126645203 the Metabolomics Laboratory, The Montreal Heart In- email: [email protected] stitute, University of Montreal Emily Drabant-Conley, 10 EvolDir April 1, 2015
Director Business Development 23&Me Alan Evans, Di- issue in a high-impact journal that synthesizes diverse rector Ludmer Institute, McGill University Tom Hudson, views on this important topic, and development of fu- President Ontario Institute for Cancer Research, Uni- ture working groups to investigate specific questions in versity of Toronto Eimear Kenny, Asst. Professor of greater depth. Genetics and Genomic Sciences, Mt. Sinai NY Daniel For those wishing to participate in the Catalysis Meet- Levy, Director of the Framingham Heart Study, Boston ing - including scientists from the Research Triangle University Gil McVean, Director, Big Data Institute, Universities - we ask that you fill out a brief applica- WTCHG, Oxford University Jonathan Marchini, Profes- tion at this link: http://goo.gl/forms/LuCWB5Vhgm– sor Statistical Genomics, WTCHG, Oxford University Hillary S Young Noble Hall 2116 Department of Ecology, Stephen Montgomery, Professor The SardINIA Project, Evolution, and Marine Biology University of California, Stanford University Charles Rotimi, Chief and Director, Santa Barbara Santa Barbara, CA Phone: 805-893- Metabolic Cardiovascular and Inflammatory Disease 4681 http://www.eemb.ucsb.edu/people/faculty/young Genomics Branch, Centre for Research on Genomics Hillary Young
DEADLINE APPROACHING! NESCent/SSE 2015 MSI Faculty Travel Award - Evolution 2015 (Brazil) SaoPaulo Evolution Jun26-30 The National Evolutionary Synthesis Center (NESCent) MinorityStudentTravel and the Society for the Study of Evolution (SSE), are teaming up to provide airfare and conference registration for faculty from Minority Serving Institutions (MSIs) to APPLICATION DEADLINE APPROACHING! Evolu- attend the Evolution 2015 conference in Guaruj´a,S˜ao tion 2015 (Brazil) - Minority Graduate Student Travel Paulo, Brazil from June 26-30, 2015. Please note that Award all other expenses (food, lodging, ground transporta- The National Evolutionary Synthesis Center (NESCent) tion, costs associated with visa procurement) are the and the Society for the Study of Evolution (SSE), are responsibility of the traveler. teaming up to provide airfare and conference registration If you are a faculty member at an MSI, HBCU or for minority graduate students attending the Evolution other institution with significant enrollment of under- 2015 conference in Guaruj´a,S˜aoPaulo, Brazil from June represented minority students, you are encouraged to 26-30, 2015. Please note that all other expenses (food, apply. lodging, ground transportation, costs associated with visa procurement) are the responsibility of the traveler. This award is intended to provide MSI faculty with an opportunity to present original research in evolution, Applicants must be graduate students at the time of systematic biology, evolutionary genomics/informatics, the conference (June 26-30, 2015), working towards a evolution education/outreach or other disciplines typi- Masters or PhD in evolutionary science, evolutionary cally represented at the Evolution meetings. As such, ecology, biogeography, evolutionary informatics, evo- 14 EvolDir April 1, 2015 lution education or some other field appropriate for tenue par l’Universit´ede la Saskatchewan. Cette ann´ee, the focus of the Evolution 2015 conference (http://- le th`emede la conf´erenceest : Acologie˜ et ´evolution www.evolution2015.org). des paysages am´enag´es . Une gamme passionnante Applicants must be members of under- de symposia, conf´erenciersinvit´eset excursions sur le represented/under-served racial/ethnic groups, as terrain ont ´et´eorganis´es.Pour plus de d´etails,veuillez defined by the National Science Foundation (http://- consulter le site internet de la conf´erence: http://- www.nsf.gov/statistics/wmpd/). csee2015.usask.ca/fr/. L’inscription `ala conf´erenceet l’appel de pr´esentations sont maintenant ouverts. Les Applicants must be US citizens, permanent residents, frais d’inscription htive et l’appel de pr´esentations se or foreign nationals currently enrolled in US-based grad- terminent le 15 mars 2015! uate programs. All applicants must be free of any re- strictions which would prevent them from traveling out [email protected] of the US, to Brazil over the dates of the conference. The application package consists of basic information, a one-page Statement of Academic Interests and Career Goals, a brief biosketch, and a Letter of Recommenda- tion from your academic advisor. Scotland EMPSEB StudentEvolutionaryBiology Sep8-12 APPLICATION DEADLINE: MARCH 15TH, 2015, 5:00 PM PST
AWARDS WIL BE ANNOUNCED BY MARCH 20TH, Registration is now open for EMPSEB21: The 21st 2015 European Meeting for PhD Students in Evolutionary For more information and to apply, please visit http:/- Biology /bit.ly/16hefaq .If you have questions, please contact Organised by the University of Edinburgh Jory Weintraub ([email protected]). Location: University of Stirling - Stirling, UK Date: Jory P. Weintraub, PhD Assistant Director, Education September 8-12th, 2015 & Outreach National Evolutionary Synthesis Center (NESCent) 2024 West Main St., Suite A200, Durham, To register, please visit the following link: http://- NC 27705 Phone: 919.668.4578 Fax: 919.668.9198 Email: www.epay.ed.ac.uk/browse/extra info.asp?compid=- [email protected] Skype: jory.weintraub 1&modid=2&deptid=24&catid=16&prodid=- 1886&searchresults=1 For more information on “Weintraub, Jory P”
Mike Ritchie Centre for Biological Diversity, School Dear colleagues, of Biology, University of St Andrews, Fife. Scotland KY16 9TH UK Phone: 0 (44 outside UK) 1334 463495 From: http://www.uws.edu.au/hie/- Some websites: Lab: http://biology.st-andrews.ac.uk/- events and seminars/biology of tephritid fruit flies ritchielab/ Uni: http://www.st-andrews.ac.uk/- Researchers from the Australian Tephritid fruit fly profile/mgr Google: http://scholar.google.co.uk/- community (e.g. CSIRO, QUT, Macquarie, Murdoch, citations?user=JSkvwMsAAAAJ&hl CBD: http:/- SARDI, UNSW, UWS) are gathering for an inaugural /biodiversity.st-andrews.ac.uk/ Michael Ritchie semiannual workshop to discuss scientific advances on
111 Koshland Hall, MC 3102 Berkeley, CA 94720 510.642.5601 [email protected] http://spechtlab.berkeley.edu/ Chelsea Specht
Get new Ideas, learn new techniques, form new collabo- UCalifornia Berkeley EvoDevo rations: 2015 Meeting of PanAm EvoDevo Aug5-9 Deadlines REGISTRATION NOW OPEN for the inaugural meet- ing of the Pan American Society for Evolutionary De- velopmental Biology < http://www.evodevopanam.org/ Secure your spot now at the EvoDevo Event of the Year! >! Mark your calendars for 5-9 August, 2015, 1) Join PanAm EvoDevo. Register NOW before all 350 slots are filled! 2) Register and submit an abstract - NOW. *The registration deadline is April 1, 2015. Click **here* < http://www.evodevopanam.org/meetings– 3) Attend the meeting “ August 5th in Berkeley, CA. events.html >* to register.* Registration for the inaugural meeting of the Pan Amer- Join us in Berkeley, California for the first EvoDevo ican Society for Evolutionary Developmental Biology is meeting in the Americas sponsored by a new profes- open! Register and Submit your Abstract by April 1 to sional society dedicated to supporting the EvoDevo secure your spot. Mark your calendars for the meeting field! dates, 5-9 August, 2015. A few meeting highlights: There are only a few spaces left to attend, and a few days left to submit your abstract!!! - *Confirmed speakers: *Chris Amemiya, Alexa Bely, Sean Carroll, Rachel Collin, Kim Cooper, Tamara Franz- The registration deadline is April 1, 2015. Click here to Odendaal, Matt Gibson, Angela Hay, Vivian Irish, register. Catherine Linnen, Mark Martindale, Jose Xavier Neto, Follow us: @EvoDevoPanAm Join Us: #EvoDevo15 Natalia Pab´on-Mora(Early Career Award Recipient), Richard Palmer, Rudy Raff (Pioneers Award recipient), A few meeting highlights: Bob Reed, Matt Rockman, Neelima Sinha, Stacey D. - Invited speakers: Chris Amemiya, Alexa Bely, Sean Smith, Ralf Sommer, Mansi Srivastava, James Umen Carroll, Rachel Collin, Kim Cooper, Tamara Franz- - *Contributed papers *selected from submitted ab- Odendaal, Matt Gibson, Angela Hay, Vivian Irish, stracts: submit now to ensure you have a chance to Catherine Linnen, Mark Martindale, Jose Xavier Neto, Natalia Pab´on-Mora(Early Career Award Recipient), present your work. Richard Palmer, Rudy Raff (Pioneers Award recipient), - Small, friendly symposia with focused breakout groups Bob Reed, Matt Rockman, Neelima Sinha, Stacey D. and workshops Smith, Ralf Sommer, Mansi Srivastava, James Umen - Engaging posters on display throughout the entire - Selected abstracts chosen for presentations by members; meeting faculty, postdocs and students encouraged to apply. - Poster awards and prizes for students and postdocs - Posters on display throughout the entire meeting All details about registration, accommodations, child - Poster prizes for PhD students and postdocs care, and the conference program are available at the following website: http://www.evodevopanam.org/- - Child Care reimbursement available!! Bring the whole meetings–events.html Support the Society and Be- family. come a Member!! To learn more about PASEDB, visit All details about registration, accommodation op- the following website: http://www.evodevopanam.org/ tions, childcare services, and the conference pro- Chelsea D. Specht, PhD Associate Professor; De- gram are available at the following website: http:/- partments of Plant and Microbial Biology & Inte- /www.evodevopanam.org/meetings–events.html Sup- grative Biology Curator of Monocots; University and port the Society and Become a Member, and enjoy the Jepson Herbaria University of California, Berkeley benefits of being part of the fast-growing and intellectu- April 1, 2015 EvolDir 19 ally invigorating EvoDevo community!! To learn more about PASEDB, visit the following website: http://- www.evodevopanam.org/ The Organizing Committee and the PanAm SEDB Executive Council look forward to welcoming you to Berkeley in August! ULisbon ReticulateEvolution Jul17 Ehab Abouheif Karen Sears Nipam Patel Chris Lowe [email protected] CFA: Thematic Session on Reticulate Evolution Before and After the Modern Synthesis: Historical and Episte- mological Perspectives and Wider Applications Beyond Traditional Fields -Organized by Nathalie Gontier & Jan Sapp UHuddersfield ProtistEvolution Apr15-17 ***DEADLINE APRIL 1st, 2015*** University of Lisbon, 17th of July, 2015 Website http://- iss-symbiosis.org/Symposia INVITED SPEAKERS Eric Bapteste, Vitor G. Faria & Elio´ Sucena, Ricardo Guer- BSPB 2015 Registration Open rero, Frank Kressing, and Laura Weyrich. Abstracts are The 2015 British Society For Protist Biology Spring now online at: http://appeel.fc.ul.pt/sub/eve/dir/iss/- Meeting will be held between 15-17th April 2015 at the iss.html CALL FOR ABSTRACTS & POSTERS We University of Huddersfield. The conference will host two welcome Senior and Junior Researchers to submit poster mini-symposia - Experimental Evolution in Protists and or regular talks (20 minutes). The full call can be read The Evolution of Multicellularity - as well as sessions at http://appeel.fc.ul.pt/sub/eve/dir/iss/iss.html AB- for posters, student talks and contributed talks. STRACT SUBMISSION If you would like to participate in the session, then submit your talk or poster abstract A limited number of student bursaries will be allocated before April 1st, 2015 at http://iss-symbiosis.org/page- to Society members who are presenting at the conference 1805892 Be sure to select the specific thematic session: and will be offered on a first come-first served basis. “Reticulate Evolution Before and After the Modern Syn- Reduced rate Early Bird registration will be open until thesis” the 28th March 2015. Full price registration will remain REGISTRATION open after this date. You can register for the specific symposium or the full The following speakers will be presenting in the sym- conference, and please note that becoming an ISSmem- posia: Experimental Evolution In Protists Will Ratcliff ber reduces the registration fee. ISS will also provide (Georgia Tech) - Plenary Mike Brockhurst (York) Dun- a limited amount of travel awards to students. Reg- can Cameron (Sheffield) Ville Friman (Imperial) Oliver istration procedures are detailed by the International Kaltz (Montpellier) Kai Lohbeck (Kiel) Chris Lowe (Ex- Symbiosis Society at http://iss-symbiosis.org/ . appee- eter) Peter O’Toole (York) lannouncements
–001a11c39ce21100ae0512486f69 Content-Type: text/plain; charset=UTF-8 Dear Colleagues, The field of population genetics has a remarkable tradi- tion of being a tight-knit and nurturing community. In order to better foster that sense of community for the 20 EvolDir April 1, 2015 popgen groups in the Midwest, we thought it would be 1:30-2:25pm Three 25 minute talks fun to organize a short scientific conference to which we –001a11c39ce21100ae0512486f69 could bring our labs and have meaningful introductions and interactions. After a successful first trial last year (Evidence on https://midwestpopgen.wordpress.com/), we are excited to run this meeting again. Thus, we’d like to invite you to come and bring your UMichigan ECSS Microbiome Ecol group to the meeting of the MidWest Population Ge- netics group, which will be held on July 25-26th at the Evol Mar28 University of Michigan. The meeting will begin Satur- day and continue to Sunday with a BBQ on Saturday evening. Dear Colleagues, The keynote speaker will be Goncalo Abecasis, chair We are pleased to announce this year’s Early Career Sci- of Biostatistics at the University of Michigan. Thir- entist Symposium, to be held Saturday, March 28, 2015 teen 25 minute talks will be selected from submitted in East Hall on the campus of the University of Michi- abstracts. Students are especially encouraged to attend gan, Ann Arbor. The theme this year is “Ecosystems and present their work. There will be a small prize for within organisms: ecology and evolutionary biology of best poster and best talk by a student or postdoctoral the microbiome.” fellow. Our outstanding lineup of keynote speakers and emerg- Space is limited, so if you do plan to attend, please ing leaders will address topics such as the role of the RSVP to [email protected] or sign up on http://- microbiome in disease processes, micro-evolution, and tinyurl.com/kv3vtx4 by June 1, and submit your ab- development, meta-community theory in host-associated stracts by June 1 to [email protected] so we communities, multi-host multi-parasite systems, and eco- can finalize our program. There is no registration fee. immunology. The research focus ranges from bacteria The tentative schedule follows below. We do hope that to metazoans and from fitness effects on host organ- you can make it and help establish this as an important isms or their microbiota to the downstream effects of meeting for the population geneticists in our region! microbiomes on ecosystems. All the best, We are delighted to announce our keynote speakers: Seth Bordenstein, Associate Professor, Departments of Don Conrad, WashU Biological Sciences and Pathology, Microbiology, and John Novembre, Chicago Immunology, Vanderbilt University Bret Payseur, Wisconsin Georgiana May, Professor, College of Biological Sciences, Sebastian Zollner, Michigan University of Minnesota. Draft Agenda: The following series of talks and interaction time have been scheduled: Saturday Seth Bordenstein (Vanderbilt U.): The microbiome and 12:00-1:30pm Registration and light lunch Darwin’s mystery of mysteries 1:30-3:30 Four 25 minute talks Katherine Amato (U. Colorado): Into the wild: explor- 3:30-4:30 Posters ing the influence of gut microbes on host ecology and behavior 4:30-5:30 Keynote Kevin Kohl (National U. San Luis): Friends for life: gut 7:30-11 BBQ microbes allow herbivores to consume toxicplants Sunday Andrea Jani (U. Hawaii): Microbial ecology of an infec- 8-9 Breakfast tious disease: Do symbiotic bacteria protect frogs from the fungal pathogen Batrachochytrium dendrobatidis? 9-10:30 Three 25 minute talks Kelly Weinersmith (Rice U.): Parasite manipulation of 10:30-10:45 Break host phenotype: mechanisms, behavior, ecology, and 10:45-12:15 Three 25 minute talks evolution 12:15-1:30pm Lunch Lunch and poster session, East Hall, third floor terrace April 1, 2015 EvolDir 21
Rachel Vannette (Stanford U.): Community assembly gan. Details about the schedule, grants, and registration and function of the floral microbiome is available at http://ssb2015standalone.weebly.com/ Justine Garcia (Emory U.): Animals in a microbial Note that attendance will be capped at 300 participants world: partner fidelity and of horizontal bacterial sym- so register early. bioses in true bugs The panel discussions include: Angela Poole (Cornell U.): Human salivary amylase - - *Species concepts are outmoded and hinder progress gene copy number impacts the gut microbiome and its in evolutionary biology *(Chris Simon and James Mal- function let) Georgiana May (U. Minnesota): Microbial interactions - - *Molecular dates are reliable and provide a robust drive the evolution of virulence in pathogens foundation for interpreting the history of life* (Charles Dinner reception, Museum of Natural History, Hall of Marshall and Blair Hedges) Evolution, second floor - - *More data or better models* (David Hillis and Antonis Rokas) Register to attend : http://sites.lsa.umich.edu/ecss/ Registration is free of charge but we strongly encourage - - *Accurate inference with comparative methods? The you to register so we may provide adequate food and re- field isn’t paying enough attention to learning the limits freshment. Graduate students from all universities and of what we can know* (Wayne Maddison and C´ecile all disciplines are invited to present their work during a An´e) lunchtime poster session, and can indicate so when they The workshop topics include: register. - - *Computational Macroevolution: Analysis and Visu- Lunch will be provided at the poster session and a dinner alization of Complex Evolutionary Dynamics on Phylo- reception will follow the symposium. genies (Dan Rabosky)* Looking forward to your participation, - - *Publishing digital phylogenies: choosing content, 2015 Early Career Scientists Symposium organizing com- formats, repositories and licenses that make trees useful mittee for future work (Karen Cranston)* Tim James (chair) Chelsea Wood Kevin Theis Marian - - *Comparative methods in R (Brian O’Meara)* Schmidt Thomas Jenkinson - - *Model-based Biogeographical Analyses: Principles For further information, contact and Practice** (*Jeet Sukumaran) Kimberly Fonville
mittee is looking forward to welcome you to Vienna in July! [email protected]
Vienna SMBE2015 Jul12-16 EarlyBird ClosingThisSunday
Zurich EvolMed Jul30-Aug1 Hello evoldir community, last chance for early bird registration: register by Sun- day, March 1, to save up to 30% on the registration fee for SMBE 2015, held in one of the most beautiful “Dear Colleagues, cities at the spectacular Imperial Palace (Hofburg) in the heart of Vienna! Just as a gentle reminder: The abstract deadline for the ”Evolutionary Medicine Conference: Interdisciplinary A few meeting highlights: Perspectives on Human Health and Disease“ (Juli 30- - All posters will be on display throughout the entire August 1 2015 in Zurich, Switzerland) is approaching meeting. now: - At least four poster sessions - Abstract Deadline: March 30, 2015 - Early registration Deadline: May 31, 2015 - 27 symposia on cutting edge topics suggested by SMBE members and one Open Symposium for which 5 featured Find all relevant information (abstract submission, speakers will be selected though the Local Organising registration, accommodation, etc.) on our offi- Committee (LOC). cial conference webpage: http://www.iem.uzh.ch/- evolmedconf2015.html Please get in contact with us if - Plenary speakers: Doris Bachtrog (UC Berkeley), Joe you have questions: [email protected] Felsenstein (Univ. of Washington), Johanna Schmitt (UC Davis) and Diethard Tautz (MPI for Evolutionary Thanks for sharing the event and the call for abstracts Biology). among your colleagues! - Heavily subsidized child care We would be happy to welcome you in Zurich soon... - many awards (https://www.smbe.org/smbe/- Best wishes AWARDS.aspx): — Poster prize for postdocs and PhD Frank R¨uhli,Nicole Bender and Kaspar Staub (Confer- students — Fitch prize — Young investigator travel ence Organisers)” awards — Junior and mid career research awards — Child Care Travel Awards Dr. Kaspar Staub Institute Manager, Senior Research Assistant Morphology/Imaging Group Institute of Evo- - affordable accommodation (starting from euro 19,- lutionary Medicine (IEM) University of Zurich Win- /night. Also many double rooms are available for euro terthurerstrasse 190 CH-8057 Zurich, Switzerland Office 60,- /night incl. breakfast) Y42 G88a Phone +41 44 635 05 13, Mobile +41 79 All details about registration, accommodation options 473 83 55, Fax: +41446355702 [email protected] and travel discounts are available at the conference http://www.iem.uzh.ch/people/kasparstaub.html Kas- website: www.smbe2015.at The Local Organising Com- par Staub
GradStudentPositions
Austria EvolutionGenomeSize ...... 23 QUT Brisbane Australia MammalEvolution ...... 35 Berlin ConservationFisheries ...... 24 Rennes UWuerzburg FishEvolutionSex ...... 35 BielefeldU MarinePopulationGenetics ...... 24 TulaneU EvolutionaryBiol ...... 36 BournemouthU HumanComparativePhylogeography 25 UAberdeen InsectNicheEvolution ...... 36 CurtinU Australia MarinePopulationGenetics . . . . . 26 UAdelaide GenomicEvolutionAncientDNA ...... 37 CzechRepublic MontaneSpeciation ...... 27 UAmsterdam MiteGenomics ...... 38 Europe 15 WineEvolution ...... 28 UBern PlantHerbivoreInteractions ...... 39 Groningen 3PhD PDF OriginSpecies ...... 28 UBristol MolecularConvergence ...... 39 IMPRS UKiel EvolutionaryBiology ...... 28 UBritishColumbia ConservGenetics ...... 40 IZW Berlin 2 EvolutionaryDiseaseDynamics ...... 29 UExeter CellEvolutionPhylogenomics ...... 41 Kaust SaudiArabia UVBRadiation ...... 30 UFlorida InsectEvolution ...... 41 KLIVV Vienna FishBreedingSystems ...... 31 UHuddersfield 5 EvolutionaryGenetics ...... 41 LaurentianU 2 WildlifeEvolution ...... 32 UMelbourne Insecticide Adaptation ...... 42 LeibnizInst Berlin PleistoceneImmunoDiversity . . . . 32 UNewSouthWales LizardEvolution ...... 43 LundU Sweden SocialEvolution ...... 32 UQueensland SexBiasedGeneExpression ...... 44 MichiganTechU Watermilfoil PopulationGenetics . . 33 UStAndrews Adaptation ...... 44 NewcastleU 2 PlantAdaptation ...... 34 UTulsa ComparativeTranscriptomics ...... 45 NewcastleU PlantAdaptation ...... 34 UZurich OrchidSpeciation ...... 46 Portugal Biodiversity ...... 34
within populations and inherited during sexual repro- duction, and (3) to test assumptions and predictions of general hypotheses on genome size evolution using intra- Austria EvolutionGenomeSize population genome size variation, e.g., that clones with small genome size are favored by selection for maximum population growth rates under nutrient limitation, that PhD position: Evolutionary ecology of genome size clones with large genome size accumulate deleterious Despite an explosive increase of genomic information mutations faster than clones with small genome size, during the last decade the ultimate causes of genome or that genome size variation at the population level size variation in eukaryotes are still controversial. At significantly co-varies with cell size, body size and egg the core of this controversy is the puzzling genome development time. size variation across eukaryotic taxa, which spans ap- The PhD candidate will be involved in all three project proximately five orders of magnitude. The goal of this aims, in particular aims (1) and (3). On the method- project is to investigate the mechanisms and significance ological level, the PhD project will include experimental of genome size variation at short evolutionary timescales, work with rotifer cultures, genome size measurements such as variation among closely related species, among using flow cytometry, basic molecular genetic techniques populations, and among individuals within a popula- (e.g., PCR), genome sequencing and bioinformatics. The tion. Our model system is the facultative asexual rotifer latter will be done in close collaboration with Dr. David Brachionus plicatilis, a cryptic species complex con- Mark Welch at the Josephine Bay Paul Center (MBL, sisting of at least 14 closely related species. Within Woods Hole, USA). This will involve a stay at the MBL this complex we focus on a lineage that has under- for a training in genomic analysis of approximately two gone a 1.9-3.5 fold increase in genome size relative to weeks duration. The main work will be done at the its sister-species (e.g., http://www.biomedcentral.com/- research institute for limnology in Mondsee (http://- 1471-2148/11/90/abstract). Within this lineage we also www.uibk.ac.at/limno/), which is part of the University study a population that exhibits a remarkable 25% con- of Innsbruck. The PhD candidate will be expected to tinuous variation in genome size. The project aims are: enroll at University of Innsbruck. The project is funded (1) to elucidate the mechanisms of genome size variation by the Austrian Science Funds (FWF) and salary is by comparative genome sequencing (2) to experimentally according to their regulations (https://www.fwf.ac.at/- determine how variation in genome size is maintained 24 EvolDir April 1, 2015 en/research-funding/personnel-costs/). found here: http://www.igb-berlin.de/stellenangebote- details/items/515.html Robert Arlinghaus The Institute for Limnology is located in Mondsee, a small town in the Salzkammergut lake district, which Prof. Dr. Robert Arlinghaus Leibniz-Institute of Fresh- lies approximately 30 km east of the City of Salzburg water Ecology and Inland Fisheries Department of Biol- and 200 km east of the City of Innsbruck. The Salzkam- ogy and Ecology of Fishes M¨uggelseedamm310 12587 mergut area is among the most popular regions in Aus- Berlin tria. It offers a high quality of life and exceptional and opportunities for all kinds of outdoor activities. The Institute has a staff complement of approximately 30, Laboratory for Integrative Fisheries Management Fac- including 8 research scientists, who work on various ulty of Life Sciences Albrecht-Daniel-Thaer-Institute of areas in evolutionary ecology of aquatic organisms. Agriculture and Horticulture Humboldt-Universit¨atzu Berlin Applicants should have a M.Sc. degree and a good back- ground in evolutionary biology. Previous experience in For running projects: www.besatz-fisch.de www.b- experimental work is also advantageous. To apply for types.igb-berlin.de www.bioenv.gu.se/english/- this position, please provide: (i) a letter of motivation (in salmoinvade For further information and pub- English) including a statement of your research interests, lication download: www.agrar.hu-berlin.de/- relevant skills and experience; (ii) a short CV including fakultaet/departments/dntw/jp bfm/publ html publications (if applicable); (iii) the names of at least two www.besatz-fisch.de www.researchgate.net/profile/- independent referees. All materials should be emailed as Robert Arlinghaus?ev=hdr xprf www.besatz-fisch.de/- a single PDF to [email protected] with the adaptfish News on twitter: https://twitter.com/- subject heading EVOL GS PHD±. Application dead- RArlinghausFish Kate Laskowski
Early stage fellowship: Marine population genetics Berlin ConservationFisheries Supervisors: Dr. Joe Hoffman (Bielefeld University, Germany), Dr Liz Harper (Cambridge University, UK) and Dr Melody Clark (British Antarctic Survey, UK) Graduate position: Berlin.ConservationFisheries Funding is available for an early stage fellowship as part of a Marie Curie Initial Training Network. The fellow A three-year Early Stage Researcher (ESR), preferably a doctoral (PhD) student, in the field of “Economic will be based in the Hoffman lab at Bielefeld University and Social Value of Conservation of Endangered Migra- (www.thehoffmanlab.com) and will have the opportu- tory Fishes” is sought within a newly funded EU Marie nity to register for a PhD. The fellowship will provide SkAodowska-Curie˚ Initial Training Network (ITN) enti- training in cutting-edge population genomic approaches and offers excellent opportunities for networking plus tled IMPRESS. IMPRESS (Improved production strate- individually tailored training and industrial placements. gies for endangered freshwater species, www.impress- itn.eu) is coordinated by the Norwegian University of The fellow should therefore be in a strong position after- Life Sciences (NBUM) in Oslo, Norway, and involves 15 wards to pursue a career in either academia or industry. ESRs hosted by 9 different organizations in Europe. The There is mounting concern over the acidification of the candidate sought here will join the Fisheries Research Worlds oceans. In the 250 years since the onset of the group of Prof. Dr. Robert Arlinghaus in the Depart- industrial revolution, atmospheric CO2 levels have risen ment of Biology and Ecology of Fishes at the Leibniz- from 280 to 381 parts per million and average ocean pH Institute of Freshwater Ecology and Inland Fisheries in has fallen from 8.16 to 8.05. Human-driven emissions of Berlin, Germany and shall be recruited by June, 1, 2015. CO2 continue to rise and have begun to outstrip even the More details on the position and how to apply can be most pessimistic of IPCC model scenarios. How will life April 1, 2015 EvolDir 25 in the oceans adapt to this changing environment? Par- docs and over thirty PhD students. It offers a stimulat- ticular concern has been expressed over organisms with ing international environment and an excellent research heavily calcified shells such as molluscs, as their ability infrastructure including brand new molecular laborato- to extract carbonate ions from seawater and incorporate ries and computing facilities. The working language of these into their skeletons may be compromised. the Department is English. This position forms part of a Marie Curie Initial Train- Bielefeld is a city of 325,000 inhabitants with an attrac- ing Network entitled CACHE: Calcium in a Changing tive historical centre and easy access to the Teutoberger Environment, funded by the EU (ref: 605051) and co- Wald for hiking and other outdoor pursuits. It offers ordinated by the British Antarctic Survey. The aim a very high standard of living and is well connected to of this network is to take a coordinated multidisci- most major European cities. plinary approach to understanding calcium regulation This fellowship offers a generous stipend of at least and shell production in four commercially important £´a3700per month, including a mobility allowance, for shellfish species, the king scallop (Pecten maximus), a period of 2.5 years. Funding is also available for the the Pacific oyster, (Crassostrea gigas), the blue mussel fellow to attend annual meetings and training work- (Mytilus edulis) and the soft shell clam (Mya arenaria). shops in Portugal and elsewhere. The fellow will be The network comprises 10 partners from 6 European encouraged to register for a PhD at Bielefeld University. countries, including research institutes, universities and commercial enterprises. As a member of the network, / the fellow will be expected to work cooperatively within the network, participate in European training events This message has been arbitrarily truncated at 5000 characters. and spend up to 30% of their training with another net- To read the entire message look it up at http://life.biology.- work partner. Full details of the network can be found mcmaster.ca/˜brian/evoldir.html at www.cache-ITN.eu . The fellow will use population genomic approaches including RAD sequencing and tran- scriptomics to (i) conduct a comparative analysis of the population structure of the four species along a Euro- pean latitudinal cline; (ii) explore how stocking practices, hybridization, oceanographic barriers and life-history BournemouthU interact to shape population structure; (iii) determine HumanComparativePhylogeography the relative contributions of genotype and phenotypic plasticity to shell morphology and ultrastructure; (iv) test for signatures of selection at candidate genes in- volved in calcium regulation and deposition. There will PhD position at Bournemouth University: also be scope for the fellow to explore their own related Project Title interests within the framework of this project and in collaboration with the other partners. Human Biogeography: Comparative Phylogeography of Modern Humans and Other Organisms We seek a bright and highly motivated candidate who holds an M.Sc. or equivalent in a relevant topic (e.g. Project Summary marine biology, population or evolutionary genetics, Aims and Rationale - We will compare the published bioinformatics). The ideal candidate will have strong phylogeographies (genetic biogeographies) of modern quantitative skills and ideally some experience of pro- humans with those of other vertebrates to elucidate gramming, although training can be provided. Experi- the patterns of population movement in the past. The ence of RAD sequencing would also be advantageous science of phylogeography provides an understanding but is not necessary. The candidate should also be able of the population dynamics of species in relation to to work both independently and as part of a multidisci- landscape, climate and human related processes over plinary team. A high standard of spoken and written the last 50 thousand years. Species respond to these English is required. processes individually, for example using different refu- The fellow will join the Hoffman lab, a young and dy- gia at different times. The location of these refugia is namic group comprising five PhD students and a post- also determined by the geography and topography of doc. They will be based at the Department of Animal Be- the landscape. Phylogeography can be used to identify haviour at Bielefeld University (www.uni-bielefeld.de/- the location of these species refugia and/or the place of biologie/animalbehaviour/home.html). The department origin of domestic / commensal species. currently hosts six principal investigators, seven post- Methods - Phylogeographic studies have been performed 26 EvolDir April 1, 2015 on organisms as varied as red deer, trout, snails, oak in other organisms will help identify similarities and trees, ferns and bacterial and viral pathogens like Black differences between them. The ecological and general Death and Rabies. Studies have also been done on biological characteristics of similar and differing species’ domestic (sheep, cattle, wheat) and commensal (house patterns will help reduce the possible explanations for mouse, black rat) plants and animals. The data from those patterns. For example humans are widespread most of these studies are deposited on GenBank (a freely geographically similar to wolves, ravens and pike but accessible online database). The project will analyse their phylogeographic patterns are different which may such data to look at the various patterns seen in each be driven by different limitations on their dispersals or species which can then be grouped by similarity accord- the length of time since dispersal. ing to geographical and genetic diversity indices. These Societal Impact will include the likely divergence dates of the diversity as well as the topology of the species’ phylogenetic tree or The evolution of humans receives a lot of media coverage network diagrams. The data will also be analysed using and Stewart is regularly interviewed by the media on GIS and associated geospacial statistics to help identify this topic, both relating to his own research and that of the place of origin and source of spread of populations. other scientists (e.g. New Scientist, BBC World Service). The response of organisms to climate change is also of Hypotheses: Human phylogeographic patterns in Eu- great interest to the public and receives a corresponding rope that relate to Upper Palaeolithic distribution amount of media attention in light of current climatic change will generally have a North/South distribution changes and species’ range shifts. The proposed project similar to wild species coming out of ice age climate will undoubtedly have a significant impact due to the refugia. Those patterns with an East/West distribution public interest it generates. will be similar to taxa whose climate refugia was in the East (or South East) or to that of domestic/commensal The understanding of population dynamics in species plants and animals whose origins lay in the South East, is important to future conservation of biotas, so the representing Neolithic or later distribution change. proposed project will have an important contribution to make to conservation planning. Stewart was involved in Clearly defined outputs - The outputs would include a Natural England consultancy project looking at the a paper submitted to a high impact journal (Nature, identification of Science, PNAS) summarising the general results of the project. A further three papers are envisaged in subject / specific journals like Molecular Ecology, Journal of Hu- man Evolution and the Journal of Biogeography. The This message has been arbitrarily truncated at 5000 characters. results of the work will also be presented at interna- To read the entire message look it up at http://life.biology.- tional meetings such as that of the Society of Molecular mcmaster.ca/˜brian/evoldir.html Biology and Evolution, the European Society of Human Evolution etc. Academic Impact Stewart’s paper in Science which looks at Late Pleis- tocene Humans outside of Africa in relation to the bio- geographical patterns of other organisms suggests that CurtinU Australia there would be an appetite amongst the people in the MarinePopulationGenetics human evolution community for such an analysis. The research will have an impact on biological anthropology (human evolution), biogeography and molecular ecology ’Population Connectivity of Reef Fish in Tropical north- thanks to the production of a minimum of 4 publications western Australia’ as well as the participation at international conferences (see above). Application Closing Date: until filled The evolution and population genetics (phylogeogra- PhD Project with Curtin University, Perth Australia phy) of humans receives a disproportionate amount of This project will employ state of the art genotype-by- attention. Other organisms, although they do not re- sequencing methodologies to generate a large volume of ceive the same depth of attention as humans represent single nucleotide polymorphism (SNP) and microsatel- the breadth of possible patterns and corresponding pro- lite DNA genetic data to provide the first comprehensive cesses that can exist in organisms over these time scales. investigation of ecological connectivity in the Kimberley Comparing the genetic patterns in humans with those marine environment in NW Australia. The research April 1, 2015 EvolDir 27 outcomes will inform the management of fish and other exploited resources and also the design of marine pro- tected areas and off-reserve assets in this remarkable yet understudied region. We anticipate that the ap- proach used in this project will serve as a template for CzechRepublic MontaneSpeciation investigating ecological connectivity in other regions of Western Australia. The project is a partnership between Curtin Univer- sity, the Western Australian Marine Science Institute *PhD: BCCeskeBudejovice.MontaneSpeciation* (WAMSI) and the Department of Fisheries, WA. We We are seeking a highly motivated postgraduate student are seeking an Australian or International postgraduate to join our international team studying speciation in student to develop and deploy contemporary and next plants and insects along tropical altitudinal gradients. generation genomic markers for various fish species along We are based at the Laboratory for Tropical Ecology at the tropical coast of north-western Australia with the the Institute of Entomology, Biology Centre Academy remote and environmentally extreme Kimberley region of Sciences, Ceske Budejovice, Czech Republic, comprising the main focal area. The successful applicant will have strong background One of the major aims of the PhD research will be to in: infer the routine distances of dispersal and patterns of connectivity among populations of key fish species along Entomology the NWA coast (e.g. stripey snapper, blue tuskfish and Botany the range restricted Miller’s damselfish). Through the Bioinformatics genetic analyses of key taxa with contrasting dispersive life histories the techniques utilised in this project will Molecular ecology provide species- specific estimates of realised connectiv- Population genetics ity at reef-scale (hundreds of metres), inter-reef scale (kilometres-tens of kilometres) and inter-region scale And/or biostatistics (tens-hundreds of kilometres). He/she will be supervised by Simon Segar and expected Eligibility criteria: Students must have a First Class to develop a research programme on speciation in *Fi- Honours or equivalent to be eligible for an Australian cus*, their pollinating wasps and symbiotic microbes Postgraduate Award (APA), or if an international stu- of the wasps along a continuously forested altitudinal dent have 1-2 publications in high quality, peer-reviewed gradient in Papua New Guinea (PNG). The project journals and have lead or co-ordinated a significant will involve field work in PNG and the use of next research project to be eligible for a Curtin Interna- generation sequencing to study the population genet- tional Postgraduate Scholarship (CIPRS). Interested ics of plant/insect/microbe networks. The successful candidates should contact Dr Jennifer McIlwain (jen- candidate will be expected to work closely with our [email protected]) for further information collaborators at the University of Minnesota (USA) and and send a cover letter outlining their research interest the Hawkesbury Institute for the Environment at the and experience along with their CV. University of Western Sydney (Australia). Dr Jennifer McIlwain Ph.D (Marine Ecology) Head of The position is fully funded (tuition, research and living Department Department of Environment and Agricul- expenses) for EU applicants only (but candidates from ture School of Science Curtin University Tel | +61 8 all countries are eligible). The duration of the position 9266 9041 is four years and a completed MSc degree is required as is the equivalent of a 1st or 2.1 undergraduate degree Email | [email protected] Web | http://- in biology, ecology or a related field. The successful curtin.edu.au [email protected] candidate will have to conduct field work in a tropical forest in often challenging conditions. They will be able to work independently and have experience with the collection and analysis of population genetic data. For further details of the project please and group see: https://www.dropbox.com/s/ot87ffj4keilszs/- PhD%20Project%20Description.docx?dl=0 http://- www.entu.cas.cz/png/cv-novotny-vojtech-lab.html 28 EvolDir April 1, 2015
To apply please send a CV, contact details for three the origin of species assemblages’ awarded to prof. Ram- references, and cover letter stating qualifications, pal S. Etienne ([email protected]). The aim of this previous work and motivation to Simon Segar (si- program is twofold: 1. developing a fully stochastic, [email protected]). The deadline for applications dynamical, eco-evolutionary and data-friendly theory of is April 20th 2015, with a preferred start date of June community assembly, and 2. testing and informing this 1st. theory with model-oriented evolutionary experiments Simon Segar
To obtain further information about our PhD program a reduction in host specificity. The AQUAVIR project and application details please visit our website at http:/- will determine whether water is a significant viral vector /www.evolbio.mpg/imprs . Well-motivated and highly- and how viruses behave mechanistically in such settings, qualified students from all countries are welcome to and develop mathematical models to understand the apply. A Master of Science degree or a Diploma as epidemiology and evolution of this phenomenon. We well as a strong interest in Evolutionary Biology and therefore seek to fill the following positions: flexibility in the research project are prerequisites for - 2 doctoral positions in evolutionary disease ecology - 1 entering the program. We are looking forward to your postdoc in molecular virology - 1 postdoc in mathemat- online application for a PhD fellowship in the beautiful ical modeling in epidemiology landscape of Northern Germany. Specifically: The deadline for applications is April 19, 2015. The selection week will be held from June 22 - 26 and the 1 doctoral student in evolutionary disease ecology: program itself starts on September 21, 2015. African waterholes (05/15) - IZW Contact: Dr. Kerstin Mehnert, August-Thienemann-Str. 1 doctoral student in evolutionary disease ecology: Asian 2, 24306 Pl¨on,Germany email: [email protected] waterholes (06/15) phone: +49(0)4522 763 233 - IZW/FIWI Specific tasks: Determine the distribution, The coordinator Kerstin Mehnert persistence and species usage of water sources; determine the effect of water source characteristics on virus pres- The steering committee Diethard Tautz, Hinrich Schu- ence; non-invasively determine if physiological stress is lenburg, Manfred Milinski and Thorsten Reusch correlated with virus excretion in potential host species; Natascha analyse environmental DNA of water samples to com- Natascha Hasenkamp
Within the project “Ecological constraints of fish breed- ing systems” funded by the Austrian Science Fund (FWF) a three-year PhD student position is available at the Konrad Lorenz Institute of Ethology (KLIVV) at the University of Veterinary Medicine Vienna. The PhD candidate will work on the hormonal basis of parental 32 EvolDir April 1, 2015
Specific tasks include - Development of hybridization capture assays coupled with next generation sequencing for the MHC and TLRs - Bioinformatic and evolutionary genetic analysis of generated data - Logistical coordina- LaurentianU 2 WildlifeEvolution tion of work between Canada, Denmark and Germany Requirements - Diploma or Master of Science in Biology or related fields; - Strong background in evolutionary biology and phylogenetics; - Preference will be given to 1) Ph.D. Position in Boreal Ecology-Moose Ecology, candidates with ancient DNA or forensic DNA experi- Monitoring & Modelling- Biology, Laurentian University, ence; - Preference will also be given to candidates with Sudbury, ON, CANADA-requires solid statistical skills, next generation sequencing experience; - A background Contact-Dr. Frank F. Mallory, ([email protected]). in statistics and bioinformatics would be advantageous; 2) M.Sc. Position-Owl Ecology, Biology, Laurentian - Organizational skills and ability to work in a team; - University, Sudbury, ON, CANADA-requires solid sta- Part of the project will take place in Canada. Thus, tistical skills, Contact-Dr. Frank F. Mallory, (fmal- proficiency in English (speaking and writing) is required [email protected]). The position is initially limited to two years, June 1, Frank Mallory
Project 2: The genetic basis of divergent vocalizations QUT may consider previous study, relevant research in singing birds. and work experience, research publications, and refer- The scholarships are funded by FCT (http://- ees’ reports. - Strong quantitative skills. - English www.fct.pt/index.phtml.en) - Portuguese Foundation language fluency. - Non-essential (desirable): experi- for Science and Technology. The call for applications is ence in either morphometrics, phylogenetics or other open between 10 and 27 of April 2015. bioinformatics. - Non-essential (desirable): experience in computer coding/programming, especially in bioin- Information about the programme and on ˆaHow to ap- formatics or phylogenetics. ply’ is available at www.biodiv.pt . Best regards, Maria Sant’Ana E: [email protected] T: + 351 252 660 To Apply, submit your CV, the names and con- 411 F: + 351 252 661 780 tact details for two referees, and a brief statement addressing the eligibility criteria to Matt Phillips CIBIO Divulga¸cA˜£o ([email protected]). enquiries to Matt Phillips [email protected] +61 7 3138 4805 http://www.mphillipsbiol.com The vertebrte evolution group at QUT is within the School of Earth, Environmental and Biological Sciences (in the Science QUT Brisbane Australia and Engineering Faculty). MammalEvolution Further details: http://www.mphillipsbiol.com/- contacts–vacancies.html Matthew Phillips
1.) Are different SD mechanisms triggering the same, vide foundational and advanced academic training in related or totally specific molecular pathways during the Ecology, Evolutionary Biology, Organismal Biology, and process of the fate differentiation of the gonad anlage? related disciplines. The program involves completion 2.) How stable are SD mechanisms in evolutionary of coursework and recommended completion of an inde- terms? pendent study with departmental faculty (see: http://- tulane.edu/sse/eebio/faculty-and-staff/faculty/) or an 3.) What is the evolutionary meaning of the high vari- internship with an approved off-campus organization. ability of sex determination mechanisms? The opportunity to undertake independent study or to The PhD project will focus on the identification of accrue on-the-job training with a governmental agency chromosomal sex determination mechanisms in different or private entity through an internship lends a unique species of the genus and a comparative molecular char- character to this program and may provide students an acterization of regulatory interactions of a known sex advantage when seeking employment following gradua- determining genetic network from the medaka Oryzias tion. latipes in related species with similar or divergent sex de- Tulane Universityis a member of the prestigious Asso- termining mechanisms. On the methodological level the ciation of American Universities, a select group of the project will include up to date new sequencing technolo- 62 leading research universities in the United States gies (RAD-tags, RNA-seq, ChIP-seq) and the tool-box and Canada with ’preeminent programs of graduate and for functional analyses in evolutionary developmental bi- professional education and scholarly research.’ Tulane is ology (in-vivo bioimaging, conventional transgenesis and located in the historic Gulf Coast city of New Orleans, genome editing by CRISPR/Cas9). The PhD project which is known for its culture, food and music. is embedded in a binational collaboration between the INRA institute for Fish physiology and Genomics in Applications are due May 1.Those interested in the program are encouraged to contact the pro- Rennes, France and the Biocenter of the University in Wuerzburg, Germany. The PhD student will be enrolled gram adviser (Dr. Richards-Zawacki, [email protected] at the International Graduate School of Wuerzburg and
TulaneU EvolutionaryBiol UAberdeen InsectNicheEvolution
The Ecology and Evolutionary Biology Department at Tulane University supports a one year non-thesis Mas- ter’s degree program designed for students planning Title: Niche Evolution in wild or lab-reared insects (U. to enter more advanced professional degree programs of Aberdeen, UK) (e.g., law, public health, medicine, veterinary medicine, I am seeking talented and motivated PhD students to in- natural resources management) and for students intent vestigate evolutionary causes and consequences of ecolog- on pursuing additional academic training (e.g., Ph.D. ical niche divergence during adaptive radiations, range degree programs). The program also will be useful for shifts, or in response to anthropogenic habitat modifica- students interested in seeking employment with environ- tion. mental agencies of federal, state, and municipal govern- The student may choose to conduct fieldwork with wild ment; non-governmental organizations; and in private or pest insect species in Northeast Scotland, or can ap- industry, including environmental consulting firms. ply their ideas in mesocosm experiments using lab-bred The Plus One MS degree program is intended to pro- insects such as seed beetles (Callosobruchus maculates). April 1, 2015 EvolDir 37
See http://lancasterlab.weebly.com for ongoing projects in the laboratory, and contact Lesley Lancasterlesleylan- [email protected] to express interest in joining the lab. Together, we will brainstorm a project idea that fits with the ongoing work in my lab and with your unique UAdelaide research goals. GenomicEvolutionAncientDNA Research training: The student will be provided with all relevant research training. Essential background required by the student: First / PhD positions in animal palaeogenomics and epige- second undergraduate degree (or equivalent), or masters nomics at the Australian Centre for Ancient DNA degree with commendation/distinction. (ACAD), Adelaide, Australia Link to the project: http://www.abdn.ac.uk/- We are currently conducting a number of projects inves- clsm/graduate/research-areas/niche-evolution.php tigating the genomic evolution of large mammals during To apply online: http://www.abdn.ac.uk/clsm/- periods of rapid environmental change occurring dur- graduate/research-areas/biological-and-environmental- ing the late Pleistocene and the Holocene (supported sciences.php APPLICATIONS DUE: 30th April by Australian Research Council grants DP140104233, 2015. LP130100646, and FL140100260). Key aims of these projects are to: It is advised to email Lesley Lancaster (lesleylan- [email protected]) with informal inquiries prior to ap- - Resolve the evolutionary history of living and ex- plying online. tinct megafaunal species - Characterise demographic responses of animal populations to past environmental *KEY DETAILS*: This project advert is for a change - Explore hybridisation, extinction and specia- competitively-funded scheme for a limited number of El- tion events to better understand how ancestral genetic phinstone PhD Scholarships (http://www.abdn.ac.uk/- diversity is distributed among surviving populations - clsm/graduate/elphinstone-phd-scholarships.php). Study the process of selection through time at the ge- These scholarships are available to students of any nomic scale, and investigate relationships between the nationality, and will cover all tuition and fees associated strength and direction of selection and environmental with pursuing a PhD at the University of Aberdeen. variables - Examine the role that epigenetic modifica- Living expenses are not covered in the scholarship, tions play in facilitating rapid adaptation to environ- however, and thus applicants should be prepared to mental changes contribute approximately £45,000 pounds to cover living expenses for the duration of their PhD. It is not Study species include a range of mammals, predom- advised to take on part time work during an intensive inantly ungulates and carnivorans, for which ACAD PhD-ship, so ideal candidates are those with sufficient already possesses a large collection of sub-fossil material. means to cover their expenses for the duration of their In addition, there is scope within these projects for col- studies. lecting new specimens from museums and directly from the field. For example, we recently collected deep-frozen Lesley Lancaster, PhD University of Aberdeen School bison bones from Canadian gold mines to complement of Biological Sciences Zoology Building, Tillydrone Ave. our existing collection of bovid specimens. See blog Aberdeen AB24 2TZ [email protected] +44 posts at: 01224 274551 http://lancasterlab.weebly.com The Uni- versity of Aberdeen is a charity registered in Scot- - http://acadadelaide.wordpress.com/2014/08/09/- land, No SC013683. Tha Oilthigh Obar Dheathain digging-up-frozen-bones-in-gold-mines/- https://- na charthannas cl`araichte ann an Alba, Air.` SC013683. acadadelaide.wordpress.com/2015/02/05/a-gold-mine- within-a-gold-mine/ Multiple positions are available “Lancaster, Lesley”
PhD in Plant-Herbivore Interactions (Switzerland) UBristol MolecularConvergence Herbivores and their natural enemies have a profound impact on plant growth and yield. A major aim in plant biology is, therefore, to understand the factors that influ- ence herbivore damage and predation by higher trophic We are seeking PhD candidates for a funded PhD at the levels in order to improve ecosystem management and University of Bristol. pest control strategies. This project investigates the dynamics of plant herbivore natural enemy interactions Measuring and interpreting convergence in molecular in the rhizosphere, with a focus on plant toxins and cli- data mate change. The successful candidate will work on the Supervisors: Davide Pisani (University of Bristol), interaction between maize, its most important herbivore Matthew Wills (University of Bath), and Mark Wilkin- pest Diabrotica virgifera and entomopathogenic nema- son (The Natural History Museum, London) todes as promising biocontrol agents. Using analytical, Deadline for application: 31st March. molecular and ecological approaches, he/she will inves- tigate how plant secondary metabolites influence the Informal inquiries: [email protected] interaction, and how soil abiotic factors that are likely to Please Apply Online: http://www.bristol.ac.uk/- be altered by climate change affect the different players earthsciences/courses/postgraduate/phd-research.html of the system. The PhD project is closely associated In biology, convergent similarity is a form of correspon- with the Oeschger Centre for Climate Change Research dence (e.g. between morphological features or of molec- (OCCR), a world-leading institution in climate sciences. ular sequences/structures from different species) not We look for an enthusiastic PhD student with strong caused by common ancestry. Two species that display interests in plant-herbivore interactions. Applicants a convergent feature therefore acquired it starting from should have a firm background in one of the following distinct ancestral features. At the least at the mor- fields: Molecular biology, biochemistry, plant physiol- phological level convergence is generally considered a ogy, analytical chemistry, entomology, ecology. All our consequence of evolutionary adaptation, and is generally projects are highly integrative and require willingness achieved in species that adapted to a common lifestyle. to embrace multiple disciplines within the domain of An example is the evolution of fins in dolphins (mam- plant- environment interactions. Excellent University mals) and ichthyosaurs (reptiles). Convergence happens 40 EvolDir April 1, 2015 also at the molecular level and stricking examples have in computer programming (or the will to learn about been discovered in the prestin gene in bats and dolphins. computational methods and programming). You will Prestin plays a key role in echolocation and convergence be based at the University of Bristol, in the newly built of this molecule was achieved in these two echolocating ’Life Sciences Building’, where you will join the Palaeobi- lineages. However, the extent to which convergence ology and Biodiversity Research Group. However, more affect molecular data is not clear, and the forces under- broadly, you will be the member of a diverse, Templeton pinning molecular convergence are often equally unclear. funded, research group spread between the University Further on, how we should measure molecular conver- of Bristol, Bath, and the Natural History Museum of gence is not fully clear. Sequence similarity should London, and interactions and visits to Bath and London obviously be included in the equation, but whether this will be common. similarity should be weighted, for example based on the Dr Davide Pisani Reader in Phylogenomics School of phylogenetic distance between the considered species, is Biological Sciences and School of Earth Sciences Univer- not known. Yet this can significantly impact our per- sity of Bristol Life Sciences Building 24 Tyndall Avenue ception of the pervasiveness of convergence in genomic Bristol, BS8 1TG Email: [email protected] evolution. Phone: +44 (0) 117 39 41196 Generally, evolutionary convergence is assumed to be Davide Pisani
UFlorida InsectEvolution UExeter CellEvolutionPhylogenomics PHD Position in insect systematics and evolution- Uni- versity of Florida We are seeking PhD candidates for a funded PhD at ASSISTANTSHIP AVAILABLE in the Lucky Lab at the University of Exeter working on eukaryotic cell and the University of Florida. Research Focus: Insect sys- genome evolution. This award is funded through the tematics and biodiversity, ecology, population genetics, generous donation from the Lawrence Charitable Trust evolution. Focus on ants is preferred, but not required. and Mrs Carlotta Palmer and from the College of Life Experience with the following is an asset: insect clas- and Environmental Sciences. sification, collections management, morphological and As a result of philanthropic gifts and with the aim of sup- molecular systematics, bioinformatics, fieldwork. porting research into understanding complex systems Qualifications: * Demonstrated ability to complete through interdisciplinary study and analysis of large projects and publish results. * Master’s degree in en- datasets, the University of Exeter is looking to recruit tomology, ecology and evolutionary biology or relevant a student to study for PhD starting in 2015. The ap- biological science. Applicants with intellectual interest pointed graduate researcher will be based in the research in ants and evolutionary processes are encouraged to team of Tom Richards who use ’omics’ technologies to apply. * Minimum GPA of 3.5 and competitive GRE understand the evolutionary history of complex cellular scores required. * Demonstrated ability to complete life (i.e. the rise and diversification of the eukaryotes). projects and publish results. * Excellent written and Due to the nature of this studentship and the unique oral communication abilities. manner in which it is funded, applicants are encouraged Interested candidates should send CV, statement of to identify and develop their own line of research within interest and names and contact information of three the wider research aims of host laboratory. Currently, references to alucky@ufl.edu with the subject header the work of the host laboratory covers four areas: PHD POSITION. Applications will be considered on a 1) Using environmental DNA analysis and single cell rolling basis until position is filled; suggested submission genomics to understand the diversity of microbial life deadline is April 1. Start date in Fall 2015 or Jan 2016. and how this fits into the tree of life. Dr. Andrea Lucky. University of Florida Entomol- 2) The role of horizontal gene transfer in the evolution ogy/Nematology. Gainesville, FL 32611-0620, USA. of pathogenic traits. Email: alucky@ufl.edu. Website: www.andrealucky.com 3) Understanding the nature and characteristic of the Andrea Lucky, PhD Entomology/Nematology Univer- last eukaryotic common ancestor. sity of Florida Steinmetz Hall, Rm. 2108 970 Natural Area Drive, PO Box 110620 Gainesville, FL 32611-0620 4) Developing experimental model systems to study Phone: (352) 273-3952 Email: alucky@ufl.edu cell-cell mutualistic interactions. alucky@ufl.edu Candidates are encouraged to contact the supervisor and discuss project topics of interest prior to making an application at [email protected] Further information about the studentship applica- tion can be found here: http://www.jobs.ac.uk/- UHuddersfield 5 job/AKS525/the-lawrence-palmer-phd-studentship/ [email protected] EvolutionaryGenetics
THE UNIVERSITY OF HUDDERSFIELD: DEPART- MENT OF BIOLOGICAL SCIENCES, SCHOOL OF APPLIED SCIENCES 42 EvolDir April 1, 2015
The Leverhulme Trust Doctoral Scholarship Centre in To apply, please go to: http://halo.hud.ac.uk/- Evolutionary Genomics pgr onlineapps/ and complete the on-line application, Supervisors: Professor Martin B. Richards, Dr Maria ensuring you select full-time PhD Biology. Please type Pala, Dr Ceiridwen Edwards, Dr Martin Carr, Dr Ste- ’Leverhulme Trust’ in the ’Personal Statement’ field. fano Vanin Please then email your CV, transcripts and two let- ters of recommendation in support of your application Five PhD Studentships in Evolutionary Genomics to Professor Richards (email: [email protected]). Closing date for applications: As soon as possible, and Please indicate in your email which supervisor and kind no later than April 30th, 2015 of project you are interested in, and why you believe you are well-qualified for that project. Funding availability: Funded PhD projects for UK/EU students For informal enquiries please contact: We are seeking the first cohort of five PhD scholars in Archaeogenetics: Professor Richards on +44 (0)1484 Evolutionary Genetics for the new Leverhulme Trust 471676 (email [email protected]) or Dr Maria Centre at Huddersfield, to begin in October 2015. The Pala on +44 1484 472273 ([email protected]) scholars will receive training from leading experts in Eukaryotic evolution: Dr Martin Carr on +44 (0)1484 their respective fields and undertake cutting-edge re- 471608 ([email protected]) search in archaeogenetics, palaeogenetics, bioinformatics, genomics, next-generation DNA sequencing, phylogenet- Forensic entomology/funerary archaeology: Dr Stefano Vanin on +44 (0)1484 473179 ([email protected]) ics, population genetics, human evolution and forensic analysis. Related web links: http://www.hud.ac.uk/research/- We envision openings this year in the archaeogenetics of researchcentres/egrg/ http://www.hud.ac.uk/research/- Europe, Southeast Asia/ Pacific and Native Americans, biologicalsciences/ http://www.examiner.co.uk/news/- west-yorkshire-news/huddersfield-university-secures-1m- in both humans and domestic animals, working with funding-8557938 University of Huddersfield inspiring mitochondrial DNA, Y-chromosome and genome-wide variation (including ancient DNA), and in forensic anal- tomorrow’s professionals. [http://marketing.hud.ac.uk/- ysis on molecular insect identification from South Amer- HOSTED/EmailSig2014/EmailSigFooter.jpg] Martin ican and European archaeological burials. In eukaryotic Richards
S/he should be well organised, with a thorough under- standing of evolutionary biology, population genetics and molecular biology, and should have an interest in orchid pollination. The candidate is expected to be pro- UZurich OrchidSpeciation ficient in statistical data analysis, with a good working knowledge of R and proven experience in bioinformat- ics, ideally with an ecological genomics background. Programming skills in other languages (e.g. Delphi or PhD Position “ Ecological genomics of parallel C/C++) are an advantage. Since the student will have pollinator-driven speciation in orchids to prepare libraries for Illumina sequencing, basic labo- A PhD position is open for a highly motivated stu- ratory skills are necessary; previous field experience is a dent with a keen interest in evolutionary and ecological plus. Proficiency in English and good communication questions, and a solid knowledge of genomics and bioin- skills are essential, as is a completed MSc degree (or formatics/statistics. equivalent) in biology or a related discipline, and the The successful candidate will be part of a team in- proven ability to carry out research independently. vestigating the molecular basis of parallel pollinator- We offer a 3-year PhD position at the Univer- mediated reproductive isolation and ecological specia- sity of Zurich, Switzerland, at a competetive salary tion between sexually deceptive orchids of the genus (>47kCHF/a before tax) funded by the Swiss National Ophrys. The project seeks to understand the degree Science Foundation. The student will be part of the of convergence, at the phenotypic and molecular lev- Institute of Systematic Botany, located in the beau- els, of two cases of species divergence mediated by the tiful Botanic Gardens and within walking distance of same pollinators. In particular, the successful candi- Lake Zurich. The successful candidate will work in a date will investigate (1) the extent of convergence in young, active, interdisciplinary and stimulating environ- pollinator-attractive traits and reproductive isolation ment and will have access to state-of-the-art tools and between species, (2) the extent of similarities in the techniques. genomic architecture underlying these adaptive traits, Your application should consist of a letter of motivation and (3) the evolution of specific metabolic pathways (1-2 pages), your CV and (if applicable) publication list, (and their regulation) controlling pollinator attraction. and the names and e-mail adresses of three academic This multidisciplinary project will involve a combination referees. The letter of motivation should detail why you of field work (in the Mediterranean) and state-of the think the project is relevant, why you are personally art tools for phenotypic, metabolomic and ecological interested in it, and why you think you are well-suited genomic (RNA-Seq and Exome-Seq) characterisation of to undertake it. Please send your application (or any natural plant populations. For background information requests for further information) electronically to Dr on the study system, please see e.g. Schl¨uter& Schiestl Philipp Schl¨uter(philipp.schlueter at systbot.uzh.ch). (2008, Trends Plant Sci.), Schl¨uter& al. (2011, PNAS) Screening of applications will begin immediately and and Sedeek & al. (2013, PLoS One; and 2014, Mol. continue until the position is filled. The preferred start Ecol.). date is 1st of June 2015. The ideal candidate should be highly motivated and able [email protected] to articulate her/his motivation for this project clearly. April 1, 2015 EvolDir 47
Jobs
AMNH NewYork Parttime EducationFacilitator . . . 47 UBath Tech EvolutionaryGenomicsMicrobes ...... 56 ColoradoC OneYearTeaching EvolBiol ...... 47 UCalifornia Merced SummerAssist ForestAdaptation 56 ColoradoStateU GuppyBehavior SummerREU . . . . . 48 UConnecticut Bioinformatics ...... 57 EwhaWomansU Seoul EcolEvol ...... 48 UGoettingen 4 GeneticsBreeding ...... 58 ForestService Oregon PlantAdaptation ...... 49 UGroningen MolResTech MarineAdaptation ...... 59 JustusLiebigU Germany 3 Evolution ...... 49 UHawaii Hilo ResTech ...... 60 LakeForestC Chicago LabTech EvoDevo ...... 50 UHelsinki Bioinformatics ...... 60 MasseyU NZ EvolutionaryEcol ...... 51 UKansas Bioinformatics ...... 61 MFPL Vienna ComputationalBiosciences ...... 52 ULausanne parttime EvolutionaryMicrobiol ...... 62 PennsylvaniaStateU CoarlEvolution ...... 52 UMiami MolResTech MarineMammals ...... 62 QueenMaryU ResFellow EvolutionaryGenomics . . . .53 UOklahoma ResAssistProf Bioinformatics ...... 63 RiceU HuxleyFellow EcolEvolution ...... 53 UPennsylvania Informatics ...... 63 RutgersU MolLabTech MarineAcclimAdapt ...... 53 USussex ResearchTech 2 SocialBees ...... 63 TempleU AsstDir InstGenomicsEvolMed ...... 54 UVermont LabTech EvolutionaryGenomics ...... 64 TempleU DataAnalyst Genomics ...... 55 WillametteU VisitingProfessorship ...... 65 TempleU Evol GenomicsCompSci ...... 55 TempleU PopulationGenetics ...... 56
AMNH NewYork Parttime EducationFacilitator ColoradoC OneYearTeaching EvolBiol
The American Museum of Natural History seeks to hire a part-time Physical Anthropology Facilitator to work One-year openings in Animal Biology and in Ecology in the Sackler Educational Laboratory for Comparative and Biostatistics Genomics and Human Origins. Primary responsibilities will be to communicate key concepts in human biol- The Department of Organismal Biology and Ecology at ogy and evolution to the public, and teach middle and Colorado College announces two one-year, non-tenure high school groups. Facilitation requires comprehensive track Assistant Professor positions in Animal Biology knowledge of hominin and primate skeletal material, pro- and in Ecology and Biostatistics to begin in August ficiency with fundamental molecular biology techniques 2015. A review of completed applicant files will begin (i.e. PCR, restriction digest, gel electrophoresis), and a immediately and continue until the position is filled. working knowledge of basic neurobiology. Requirements Responsibilities for the Animal Biology position in- are a Masters Degree in Physical Anthropology, Forensic cludes teaching six courses including one with oversight Anthropology, Genetics, or Human Biology. The ideal of student research; the courses include an introduc- candidate will have informal teaching experience in a tory course in vertebrate biology, an animal physiology museum, zoo, or after school program. course, and either an upper-level or non-majors course Please see full listing and apply online here: https:/- in the candidate’s area of specialty. The ability to /careers.amnh.org/applicants/jsp/shared/position/- integrate subfields of zoology, physiology, and evolution- JobDetails css.jsp?postingId=142402 Julia M. Zichello, ary biology is highly desirable. Apply electronically to: PhD Manager, Sackler Educational Laboratory for http://employment.coloradocollege.edu/postings/1948 Comparative Genomics and Human Origins American Responsibilities for the Ecology and Biostatistics posi- Museum of Natural History Central Park West at 79th tion includes teaching six courses including one with Street New York, NY 10024 212.769.5138 oversight of student research; the courses include a field- based ecology course, a biostatistics course, and either Julia Zichello
ColoradoStateU GuppyBehavior SummerREU EwhaWomansU Seoul EcolEvol
The Guppy Group in the Dept. of Biology at Colorado Faculty position (non-Korean) in ecology at Ewha Wom- State University is seeking applicants for an NSF Re- ans University, Seoul, Korea search Experience for Undergraduates (REU) position in summer 2015 to study the effects of gene flow on guppy Department of Life Science and Division of EcoScience at Ewha Womans University invites application for a behavior. The successful applicant will work closely faculty position in ecology (broadly defined). This posi- with Drs. Lisa Angeloni and Chris Funk and PhD stu- dents John Kronenberger and Dale Broder to develop tion is open to candidates without Korean citizenship, an independent research project centered around our with primary language for teaching and research be- ongoing gene flow experiment. The primary objective ing English. It is a tenure-track full-time (12-month) will be to assess how our experimental treatments differ- position at the ranks of either Assistant or Associate Professor starting in September 2016. entially affect behavior and how this, in turn, impacts fitness. This REU will provide invaluable experience Applicants must have PhD degree in ecology and at least in study design, behavioral assays, molecular genetic two years of post-doctoral research experience. The techniques, data analysis, and dissemination of results, candidate will teach about two courses per semester, in- and will thereby prepare the student for graduate school cluding graduate classes, and establish a strong research April 1, 2015 EvolDir 49 program leading to publications in major journals in different populations in different climates. Results from the fields of ecology. this work will aid land managers in maintaining and We are especially interested in candidates studying cen- restoring healthy ecosystems by using locally adapted tral problems in ecology that have broad impacts and seeds. Assistants will maintain sites, reduce weeds in potential to generate productive collaboration with ecol- study plots, and collect data on the reciprocal transplant ogists and evolutionary biologists in Korea. Collab- experiment of bluebunch wheatgrass (Pseudoroegneria orative research opportunity exits with the National spicata) to determine the efficacy of seed zones. Desired skills include the ability to collect precise data, possess Institute of Ecology in Seochon, Korea. The successful applicant will be a member of the Division of EcoScience a valid driver’s license, ability to enjoy long distance at Ewha, faculty research areas of which include acous- driving and scenic views, ability to travel for 5-14 days tic animal behavior and ecology, population genetics periods, ability to weed by hand, and hoe and small of freshwater and marine fish, theoretical population machines. genetics, marine invertebrate animal diversity, plant di- Biological Science Technician (Plants) GS-0404-04 versity and systematics, primate (gibbon) behavior and Applications must be submitted on USA JOBS: ecology, and microbial metabolism. https://www.usajobs.gov/GetJob/ViewDetails/- For initial consideration and inquiry, send CV, re- 396185400 Send questions to Holly Prendeville search plan and, if possible, link to candidates’ Google Scholar Citation profile by email to Yuseob Kim “Prendeville, Holly R -FS”
JOB 1: Early Stage Researcher ESR B3 Biogeography Institute/ Supervisor Giessen - Christian Albrecht ForestService Oregon Title Drivers of Pontocaspian biodiversity Rise and PlantAdaptation Demise: satellite regions as source/sinks of Pontocaspian biota Summary This is a reciprocal transplant experiment examining The Justus Liebig University Giessen is looking for if populations and seed zones (regional groups of pop- prospective candidates with a background in phylogenet- ulations with similar phenotypes and occur in similar ics and biogeography and an interest in interdisciplinary climates) are locally adapted. palaeoenvironmental and biodiversity research in the Pontocaspian region (Black Sea, Caspian Sea and Ana- —- tolia and surroundings). Scientists with the Forest Service stationed at the Pacific Northwest Research Station in Corvallis, OR are looking Description for two field assistants to travel with us to collect data The successful candidate will be employed as researcher from a reciprocal transplant experiment at 16 common without a PhD and enrolled as PhD student to com- garden throughout the Interior Northwest US (OR, WA, plete a PhD thesis within the contract period of 3 years ID, NV) from May-July. This research project is in- to assess the role of satellite regions (Anatolian and vestigating the efficacy of seed zones (regional groups possibly Balkan lake systems) in the evolution of Pon- of populations with similar phenotypes and occur in tocaspian biota over the past 3 Ma. Lakes and Quater- similar climates) for bluebunch wheatgrass comparing nary lake deposits in Anatolia and the Balkans contain differences in establishment, survival, and reproduction various groups of Pontocaspian taxa. However, it re- of bluebunch wheatgrass populations from local seed mains largely unknown whether these satellite areas zones compared to non-local seed zones. This study served as sink or source (cf. refuges) for Pontocaspian will explore the consequences of changing climates for biota. Combined molecular phylogenetic analyses of adaptation by substituting space for time to evaluate extant Pontocaspian species from Anatolian and Balkan 50 EvolDir April 1, 2015 lakes with a rigorous updated study of fossil occur- lum vitae); The names, position and e-mail addresses of rences and their depositional/geochemical context in at least two persons that can be contacted for reference; these lake basins will allow testing their role as sinks List of publications, including submitted manuscripts and/or sources. The environmental context of biotic or papers in press, if any; Transcript of BSc and MSc change in selected lake successions will be determined diploma. through sedimentological and geochemical analyses and The required documents should be submitted by email compared with ostracod data through parallel projects. to [email protected] before 16 April 2015. The successful applicant will test the role of selected satellite regions as sources/sinks of Pontocaspian biota Job 2: Early Stage Researcher ESR B4 Evolution Insti- using fossilˆacalibratesmolecular clock approaches and tute/ Supervisor Giessen - Tom Wilke phylogeographical analyses (geneˆaflow analyses and an- Title Drivers of Pontocaspian biodiversity Rise and cestral area reconstructions). This project will include a Demise: Molecular evolution of Pontocaspian biota combined secondment at Naturalis Biodiversity Center and GiMaRIS in Leiden (NL) to study fossil molluscs Summary The Justus Liebig University Giessen is look- and to train for conservation biodiversity assessment ing for prospective candidates with a background in techniques. The candidate will enroll in an extensive evolutionary biology and an interest in interdisciplinary Network Training Program. palaeontological and phylogenetic research in the Pon- tocaspian region (Black Sea, Caspian Sea and Anatolia Research Fields and surroundings). Comparative biogeography, phylogeography, biodiver- Description The successful candidate will be employed as sity, paleontology, Biostratigraphy researcher without a PhD and enrolled as PhD student Career Stage Early stage researcher or 04 yrs (Post to complete a PhD thesis within the contract period graduate) of 3 years to reconstruct past evolutionary events and diversity changes over ~2 Ma in several Pontocaspian Research Profiles First Stage Researcher (R1) species flocks Type of contract Temporary employment with the Fed- / eral State of Hesse. Full time 40 hrs/wk Salary a month/year A salary that matches the This message has been arbitrarily truncated at 5000 characters. MSCAITN and local rules, a monthly mobility allowance To read the entire message look it up at http://life.biology.- of 600,gross and a possible monthly family allowance of mcmaster.ca/˜brian/evoldir.html 500,gross. Benefits In accordance with Marie Sklodowska Curie Regulations Information about the Marie Sklodowska Curie actions is available at http://ec.europa.eu/- LakeForestC Chicago LabTech research/mariecurieactions/ http://ec.europa.eu/- EvoDevo research/mariecurieactions/aboutmsca/quickguide/- index en.htm Financial and other technical infor- mation is available at http://ec.europa.eu/research/- Lab Tech position in EcoEvoDevo at Lake Forest Col- mariecurieactions/aboutmsca/actions/itn/index en.htm lege, Chicago. www.pontocaspian.eu Address details of workplace Department of Animal Ecology and Systematics We are looking to appoint a research technician and lab Systematics and Biodiversity Group Justus Liebig manager to work on an NSF-funded project for at least University Giessen H.-Buff-Ring 26-32 (IFZ) D-35392 one year. The major duties of the position are to assist Giessen, Germany and support undergraduate research in integrative devel- opmental biology in the Shingleton Laboratory at Lake Specific demands from your country/ institute Abil- Forest College. The specific focus of the project is to ity to work in an internationally oriented environment, explore the developmental mechanisms by which oxygen including fluency in English´I 3 M.Sc. in relevant field 4 influences body size, using Drosophila as a model organ- Applicants are invited to submit the following docu- ism. This is an ideal position for individuals wanting to ments: gain additional research experience before applying to Letter of application (max 2 pages); Resume (Curricu- graduate school, although more experienced researchers are encourage to apply. April 1, 2015 EvolDir 51
The Shingleton laboratory explores the developmental cally underrepresented groups. mechanisms that regulate body and organ size, and how Alexander W. Shingleton Associate Professor these mechanisms evolve to generate morphological di- versity. We are particularly interested in environmental Department of Biology Lake Forest College 555 North regulators of body and organ size, including oxygen level, Sheridan Road Lake Forest, IL 60045 nutrition and temperature. The Shingleton laboratory Ph: 847-735-6049 web: cam- works closely with collaborators in Arizona, Texas and pus.lakeforest.edu/shingleton Australia, and there is the potential to travel to partner institutions to gain additional research experience. More “Shingleton, Alexander” information about the Shingleton laboratory can be ob-
The Baums lab in the Department of Biology at Penn State (http://bio.psu.edu/directory/ibb3) is looking for an experienced researcher to conduct NSF-funded ex- MFPL Vienna periments on acclimatization of shallow-water corals to ComputationalBiosciences increased temperature as a result of the 2014 bleaching event in the Florida Keys. Responsibilities include or- ganizing and conducting a microcosm experiment over three months in the Florida Keys (July -Sep 2015) with The following text can also be found at: little supervision, requiring the researcher to live in http://www.mfpl.ac.at/about-us/open-positions/- the Florida Keys during this time. Experience with position/news-detail/wwtf-funded-positions-in-the- aquarium experiments on corals and AAUS SCUBA computational-biosciences-hosted-by-the-mfpl.html certification is required. The successful candidate will WWTF-funded positions in the Computational be proficient in using molecular tools such as gene ex- Biosciences, hosted by the Max F. Perutz Laboratories pression analysis, RADtag sequencing and bacterial 16s (MFPL), Vienna, Austria tag sequencing as well as analysis of next generation The WWTF Austria has launched a call for applications sequencing data. An advanced degree in marine biology in the Computational Biosciences. or molecular ecology or related fields is needed. This The “Vienna Research Groups for Young Investigators” position will be filled at the research assistant or re- call by the City of Vienna and the WWTF will fund search associate level, depending upon education and promising young scientists starting their first indepen- experience. Candidate must be able to begin work on dent research group in Vienna. One to two positions 1 June 2015. Position initially funded for 6 months with up to 1.6 Mio. EUR funding per group are avail- with possibility of continuation. Applications must be able, for 6-8 years, with the possibility during this time submitted electronically at https://psu.jobs/job/56345 of conversion to a tenure track position. See: and include a cover letter detailing research interests and experience, a current CV and names and contact http://www.wwtf.at/programmes/ls/index#c4567h information for three references. Review of applications The positions need to be hosted by a university or will begin immediately and continue until position is research institute in Vienna, so the MFPL (http://- filled. www.mfpl.ac.at) is now seeking outstanding candidates from, but not limited to, the following areas: CAMPUS SECURITY CRIME STATISTICS: For more about safety at Penn State, and to review the Annual - Computational Biology - Bioinformatics - Computa- Security Report which contains information about crime tional Biophysics and Structural Biology - Computa- statistics and other safety and security matters, please tional Genomics - Computational Population Biology - go to http://www.police.psu.edu/clery/ , which will also Computational Phylogenomics provide you with detail on how to request a hard copy Interested candidates should send their CV, brief ca- of the Annual Security Report. reer summary and research proposal, up to three publi- Penn State is an equal opportunity, affirmative action cations, and the names of three referees, preferably employer, and is committed to providing employment as a single PDF, to Graham Warren (facultyopen- opportunities to minorities, women, veterans, disabled [email protected]). The deadline is April 20th 2015. individuals, and other protected groups. This is a two-step procedure. Short-listed applicants Job URL: https://psu.jobs/job/56345 [email protected] will be invited to MFPL for interview in May and suc- cessful candidates will then be sponsored by the MFPL April 1, 2015 EvolDir 53
research (75%). The Huxley Fellows receive faculty sta- tus, employee benefits, competitive salary, and research funds for independent or collaborative research. Collab- orative interests with the existing faculty in the EEB QueenMaryU ResFellow research area are a plus. An application (curriculum vitae, statement of research interests and statement of EvolutionaryGenomics teaching) and three letters of recommendation should be submitted via e-mail to Diane Hatton, *[email protected]*. Please write “Huxley Fellow Application” in the subject Queen Mary University of London line. Application review will begin March 27, 2015. For Research Fellow to develop Bioinformatics / Evolution- further questions and informal inquiries please contact ary Genomics Facilities Dr. Julia Saltz (*[email protected]*), Huxley Fellow Search Committee Chair. Rice University is an Equal The School is therefore recruiting an exceptional per- Opportunity/Affirmative Action Employer and values a son to help improve our use of computing resources to diverse faculty. Women and minorities are encouraged drive forward Evolutionary Genomics & Bioinformatics to apply. research in the School. We are looking for someone who likes to make things happen, who is a problem solver Julia B. Saltz Assistant Professor of Ecology & Evolu- and is passionate about carving themselves a role with tionary Biology Department of Biosciences Rice Uni- a broad range of skills. We need someone who is keen versity 6100 Main Street, MS-170 Houston, TX 77005 and has a can-do attitude for this exciting and varied [email protected] Saltzlab.wordpress.com role. [email protected] The successful candidate might have a background in evolutionary biology, computer science or an informat- ics discipline. They will be expected to combine evo- lutionary insight and considerable expertise in High Performance computing and sysadmin and hacking (e.g. RutgersU MolLabTech BioPython, BioPerl, ruby, shell, R, node/javascript). MarineAcclimAdapt For example the successful candidate would be expected to be able to set up a Galaxy server and help new users exploit it for Genomic analysis, proteomics etc. Laboratory Technician, Rutgers University, New Closing date 27 March 2015 Brunswick, NJ More information available at: http://goo.gl/- The Adams Lab in the Department of Marine and TCIrdu http://bit.lty/genehack http://- Coastal Sciences is searching for an organized, enthusi- www.hr.qmul.ac.uk/jobs/items/148561.htmlRA astic, and skilled individual to work as a full time labo- Nichols
Minimum Qualifications portunities to minorities, women, veterans, disabled individuals, and other protected groups. - A bachelors degree in a related scientific field or an equivalent combination of education and relevant ex- Diane K Adams, PhD perience in molecular ecology, molecular biology, or Rutgers the State University of New Jersey Institute of developmental biology Earth, Ocean and Atmospheric Sciences Dept of Marine - Demonstrated understanding and experience in molec- and Coastal Sciences 71 Dudley Rd, New Brunswick NJ ular biology procedures (e.g. preparing reagents/buffers, 08901 USA gel electrophoresis, PCR, and cloning) (w) 848-932-3279 (c) 617-312-8076 - Demonstrated ability to execute tasks efficiently and [email protected] with rigor Diane K Adams
York City and Washington DC, Philadelphia is home CSSPage JobDetail.ASP?T=20150324152430& to a large biotech industry and has many outstanding Apply for this position online at: https:/- academic, research, and cultural institutions. Temple /hospats.adminsvc.temple.edu/css external/- University is an equal opportunity, equal access, affirma- cssPage Welcome.asp (USE job# TU-18850). tive action employer committed to achieving a diverse For additional information or enquiries, contact Sudhir community (AA, EOE, m/f/d/v). Kumar ([email protected]) Sudhir Kumar, Ph.D. Director, iGEM@Temple http://- Sudhir Kumar
TempleU Evol GenomicsCompSci
TempleU DataAnalyst Genomics Evolution/Genome Informatics Faculty Positions (As- sistant/Associate Professors) The Institute for Genomics and Evolutionary Medicine Data Analyst Position (iGEM) at Temple University invites applications for Temple University’s Institute for Genomics & Evolution- tenured and tenure-track faculty positions. We are ary Medicine (iGEM; igem.temple.edu) seeks a Technical interested in early and mid-career scientists who are Support Specialist Assistant focused on the analysis of developing theories, methods, algorithms, software, and large sequence datasets. Responsibilities include data resources for addressing significant problems in the do- management and archiving, development and imple- main of genome sequences and variation data. mentation of standard workflows and pipelines, and As core faculty of iGEM (http://igem.temple.edu), suc- analysis of high throughput data for empirical research cessful candidates will be part of an interdisciplinary conducted by iGEM scientists and collaborators. team of world-class faculty in biology, genomics and Required Education and Experience: computer and information sciences. The successful fac- ulty will have their tenure home in the Department of Associate’s (or higher) degree with at least one year of Computer and Information Sciences. Applicants for the experience in data analysis and/or computer program- assistant professor position should have the potential ming. Demonstrated experience programming with stan- to develop a significant, extramurally funded research dard languages and tools. An equivalent combination program Applicants for the senior position are expected of education and experience may be considered. Expe- to have an outstanding and continuing track record of rience working in an academic research environment is research and funding. preferred. Applicants should submit to [email protected] a single The successful candidate will have strong organizational pdf containing a cover letter, a detailed curriculum vi- and record keeping skills, clear understanding of DNA tae, a summary of current and future research interests, and expression data, experience and comfort with file and a statement of teaching philosophy. Please include manipulation in a Windows/LINUX environment as in the cover letter a link to a Google Scholar profile. well as designing and troubleshooting analysis pipelines Through their research and teaching statements appli- using published sequence analysis tools. cants should inform the search committee about the Temple University’s Main Campus is located in the transformative and cross-disciplinary aspects of their heart of Philadelphia, the 5th largest city in the United work. Review of applications will begin on March 21, States. Philadelphia is known as a center of history, arts, 2015 and continue until the positions are filled. and culture with a relatively affordable cost of living. Temple University is located in the heart of historic Temple University serves a diverse student population Philadelphia, and is the sixth largest provider of gradu- with an enrollment of 38000 students in 2014, and is ~ ate school education in the USA. Situated between New part of a vibrant educational community of 34 colleges York City and Washington DC, Philadelphia is home located within the city limits. to a large biotech industry and has many outstanding Job Posting at Temple Human Resources: https:/- academic, research, and cultural institutions. Temple /hospats.adminsvc.temple.edu/css external/- University is an equal opportunity, equal access, affirma- 56 EvolDir April 1, 2015 tive action employer committed to achieving a diverse community (AA, EOE, m/f/d/v). Sudhir Kumar, Ph.D. Director, iGEM@Temple (http:/- /igem.temple.edu) Institute for Genomics and Evo- lutionary Medicine Carnell Professor of Biology UBath Tech Temple University (SERC 602A) Philadelphia, PA EvolutionaryGenomicsMicrobes 19122, USA https://twitter.com/kumar lab http://- www.kumarlab.net [email protected] We are excited to be recruiting a Research Technician to work on a project focused on the genetic basis and evolution of social and life-history traits in a microbe (a social amoeba). The project will combine high through- TempleU PopulationGenetics put measurements of traits with genome sequencing to understand the genetic basis to variation in natural populations. The technician will be required to work independently and will oversee several different technical Postdoctoral and Assistant Research Professor positions components requiring different skill sets. The techni- in Computational Genetics/Genomics at Temple Uni- cian will support all aspects of the project, including versity culturing of strains, performing phenotyping assays, the Multiyear NIH-funded support is available for either an preparation of genomic DNA samples and the processing early stage postdoctoral researcher, or an experienced of data sets. postdoctoral researcher who would serve as Research The successful candidate will have a university degree in Assistant Professor. biology and relevant experience with laboratory based Research area: population genetics/genomics research in biology, including knowledge of basic molec- ular biology. Previous experience with microbiological The successful candidate will very likely have extensive techniques is desirable. experience in population genetic theory, particularly in the mathematical or statistical aspects of analyzing The position is fixed-term of 24 months and available population genomics data. to start as early as May 2015, but later start dates may be possible, subject to negotiation and approval. The successful candidate will become a member of both the Center for Computational Genetics and Genomics For further information and to apply please see: https:/- (CCGG) and the Institute for Genomic and Evolution- /www.bath.ac.uk/jobs/Vacancy.aspx?ref=SS3028 For ary Medicine (iGEM). CCGG and iGEM are new centers an informal discussion about the role, please contact of excellence in Temple University. Prof Jason Wolf via email: [email protected] (tele- phone or Skype consultations can be arranged) For the position of Research Assistant Professor, a key goal is developing research independence by writing and [email protected] obtaining grant applications. The position also carries opportunities for teaching, both in the classroom and in the laboratory. Please send a CV and a statement of research interests and career goals to: UCalifornia Merced SummerAssist Jody Hey email: [email protected] ForestAdaptation Websites: https://bio.cst.temple.edu/ ˜ hey https://- bio.cst.temple.edu/ ˜ hey/CCGG/index.html http://- igem.temple.edu/ [email protected] Lab/Field Assistant Job I am a plant biologist at UC Merced looking for at least one full-time summer lab & field assistant. Research in our lab centers on forest ecology & genetics, par- ticularly responses to climate change. The technician appointment would be for four months, with potential for renewal. Starting pay $14.57/hour. Available start April 1, 2015 EvolDir 57 dates: April 25-May 30, 2015. Emily Moran, Assistant Professor, UC Merced Candidates must have a bachelors degree in a biology- Emily Moran
the right to appoint professors. Details will be gladly explained upon request. Applications from abroad are expressly welcome. Under certain circumstances, the positions may be filled on a part-time basis. The Uni- UGoettingen 4 GeneticsBreeding versity of G¨ottingenstrives to increase its proportion of female staff in fields where women are underrepresented and expressly encourages qualified women to apply. The university plans to make the professorships part of the Dear colleagues, Programme for Women Professors jointly organised by please find enclosed an opening for four professorships the German federal government and regional states. Dis- in the newly created “Center for Integrated Breed- abled persons with equivalent qualification will be given ing” at the Georg-August-University Goettingen. Fur- preference. ther information can be found at http://www.uni- Applications including a CV with a representation of the goettingen.de/en/507592.html, or you can contact me applicant’s academic education and career, publications ([email protected]). Please feel free to bring this open- and teaching record should be submitted electronically ing to the attention of potential applicants. no later than April 19, 2015. Further information and Thanks and best wishes the application portal: http://www.uni-goettingen.de/- en/507592.html Full Professor “Functional Breeding ’ Henner Simianer genetics and improvement of functional traits by breed- Dr. Henner Simianer Professor of Animal Breeding ing” The successful candidate will cover the field of and Genetics Department of Animal Sciences Georg- development and implication of breeding methods for August-University Goettingen Albrecht-Thaer-Weg 3, the purpose of improving functional traits in livestock 37075 Goettingen Tel.: +49-551-395604, Fax: +49- with a focus on poultry. Research should contribute 551-395587 Email: [email protected] http://www.uni- to combining the necessary genetic performance of live- goettingen.de/tierzucht The Faculty of Agricultural Sci- stock with the expression of functional traits such as ences at the Georg-August University G¨ottingenseeks fertility, health, behaviour and resource efficiency under to fill four professorships within the framework of a new the aspect of animal welfare. To this purpose, modern “Center for Integrated Breeding” at the earliest possible genome-based approaches including methods of quanti- date. tative genetics should be utilised. Facilities for experi- mental research with animals are available. Temporary The professorships are part of a “Center for Integrated professor (W2) with tenure track “Breeding Informatics” Breeding” which is unique in Europe. This center is presently in the development stage und will bring to- The successful candidate will develop methods based gether knowledge from plant- and animal-breeding with on bioinformatics for the efficient use of data from contributions from natural sciences as well as social sci- genome sequencing, high-throughput phenotyping and ences in order to establish an internationally leading high-throughput genotyping in animal and plant breed- role in this field. The establishment of the Center is ing. This entails the development of methods which being supported by leading German companies in the combine bioinformatics approaches with concepts from fields of animal and plant breeding. The successful can- quantitative genetics, statistical genetics and popula- didates are expected to show a strong interdisciplinary tion genomics. The methods thus formulated should be approach and the willingness to cooperate with other tested with very large data sets (“Big Data”) stemming faculties. There are excellent opportunities for research from practical breeding. in cooperation with companies internationally active in Full Professor (W3) “Plant Breeding Methodology ” The the fields of animal and plant breeding. successful candidate covers the discipline of Plant Breed- In teaching, the professorships should contribute to the ing and all aspects of its role in crop production. A research orientated MSc-programme “Integrated Plant strong methodological focus on Quantitative Genetics / and Animal Breeding”, which is to be established, as well Population Genetics as well as Selection Theory is ex- as to other programmes offered by the Faculty of Agricul- pected. At a later moment, the candidate will succeed tural Sciences for BSc-, MSc- and PhD-students. Ability Prof. Dr. Heiko Becker, Professor of Plant Breeding. and willingness to teach in English are a prerequisite. / The conditions for being appointed to a professorship are stated in §25 of the Nieders¨achsischen Hochschulge- setzes (NHG) vom 26.02.2007 (Nds. GVBl. S. 69). The This message has been arbitrarily truncated at 5000 characters. University of G¨ottingenPublic Law Foundation has To read the entire message look it up at http://life.biology.- April 1, 2015 EvolDir 59 mcmaster.ca/˜brian/evoldir.html brates. The group has excellent laboratory facilities for molecular analyses. Job description We are searching for a research lab- oratory technician for our general research program, which aims at population genetic and genomic analyses of pelagic marine vertebrates using “classic” and Next UGroningen MolResTech Generation molecular technologies. The ultimate goal MarineAdaptation of our research is to understand the mechanisms driving population structuring and adaptation in the marine environment. Many aspects of our research have conser- Dear all, vation implications. The research laboratory technician will be responsible for the daily management of the We have a Molecular Research Technician position open laboratory facilities and perform a range of molecular in our lab. We are searching for a research laboratory analyses. The research laboratory technician will also technician for our general research program, which aims be involved in teaching, training and the support of at population genetic and genomic analyses of pelagic researchers and students. marine vertebrates using “classic” and Next Genera- tion molecular technologies. The ultimate goal of our Qualifications We are looking for an enthusiastic, self- research is to understand the mechanisms driving popu- motivated and independent co-worker, who enjoys rou- lation structuring and adaptation in the marine environ- tine laboratory work, equipment and database mainte- ment. Many aspects of our research have conservation nance as well as the adoption and implementation of implications. The research laboratory technician will be new molecular methods (including NGS technologies). responsible for the daily management of the laboratory Required skills: - a Master or professional (HBO) de- facilities and perform a range of molecular analyses. The gree in biology or relevant related field (e.g., molecu- research laboratory technician will also be involved in lar biology) - at least one year working experience in teaching, training and the support of researchers and a molecular biology laboratory - demonstrated under- students. standing and experience in the application of molecular This position is a 0.8 full time employment with a one genetic laboratory procedures (e.g., DNA extraction, year probation period and the perspective of long-term Sanger sequencing as well as microsatellite genotyping) prolongation. The deadline is the 26th March 2015 - demonstrated understanding of Next Generation Se- (23h59 Dutch local time). quencing technologies - demonstrated ability to execute working tasks efficiently and with rigor - demonstrated Details about the application are provided below and ability to independently acquire and implement novel are available on the University website where you can molecular protocols and troubleshooting - proficiency in also apply http://www.rug.nl/about-us/work-with-us/- standard productivity software, such as Microsoft Office, job-opportunities/overview?details=00347-02S0004DIP basic genetic software (e.g., sequencing visualization and Best regards Michael C Fontaine microsatellite genotyping) as well as database entry and -- management - good communication skills and a strong command of both written and spoken English. Organisation Since its foundation in 1614, the University of Groningen has established an international reputa- Additional desired skills: - experience with next- tion as a dynamic and innovative university offering generation molecular protocols including preparation high-quality teaching and research. Its 30,000 students of libraries for next generation sequencing - experience are encouraged to develop their own individual talents with student training and supervision in the lab - abil- through challenging study and career paths. The Univer- ity to manage a molecular laboratory - bioinformatic sity of Groningen is an international centre of knowledge or computational biology experience - cloning, primer and ranks among the top research universities in Europe. design and testing. The Groningen Institute for Evolutionary Life Sciences Conditions of employment The University of in the Faculty of Mathematics and Natural Sciences of Groningen offers a salary dependent on qual- the University of Groningen invites applications for a ifications and work experience starting at 0 position as molecular research technician placed with ˆa¬2, 067grosspermonthuptoamaximumofaˆ¬2, 791(scale7, step10)grosspermonthbyafulltimeemployment(1.0fte).T hispositionisdefinedaccordingtotheUF Ofunctionprofile Onderwijs− 0 the research group Marine Evolution and Conservation /onderzoeksmedewerker .T heparttime(0.8fte)appointmentisinitiallyforaprobationperiodofoneyearwiththeperspectiveofprolongation. (MarECON). MarECON’s main research focus is on / the evolution and conservation of pelagic marine verte- 60 EvolDir April 1, 2015
This message has been arbitrarily truncated at 5000 characters. as applicable, subject to University of Hawaii’s and/or To read the entire message look it up at http://life.biology.- business entity’s policies and procedures. Violation mcmaster.ca/˜brian/evoldir.html of RCUH’s, UH’s, or business entity’s policies and/or procedures or applicable State or Federal laws and/or regulations may lead to disciplinary action (including, but not limited to possible termination of employment, personal fines, civil and/or criminal penalties, etc.). *SECONDARY QUALIFICATIONS:* PhD from an ac- UHawaii Hilo ResTech credited college or university in Genomics, Bioinformat- ics, or related field. Demonstrated experience supervis- ing/mentoring research students. Experience working in Regular, Full-Time, RCUH Non-Civil Service position multi-investigator teams. Experience in successfully sub- with the University of Hawaii at Hilo (UH Hilo), Tropi- mitting peer reviewed articles in genomics, proteomics, cal Conservation Biology and Environmental Sciences transcriptomics, and/or bioinformatics for publication. (TCBES), Centers for Research Excellence in Science and Technology (CREST) Program’s Dynamic Interac- *INQUIRIES: * Misaki Takabayashi 932-7595 (Hawaii). tions of Symbioses and Environment (DISE) sub-project, *APPLICATION REQUIREMENTS:* Please go to located in Hilo, Hawaii. Continuation of employment www.rcuh.com, click on ’Employment’; select ’Apply’ is dependent upon program/operational needs, satis- and navigate to ’See Job Announcements and/or Apply factory work performance, availability of funds, and for a Job.’ You must submit the following documents compliance with applicable Federal/State laws. online to be considered for the position: 1) Cover Letter, *MONTHLY SALARY:* Commensurate with qualifica- 2) Resume, 3) Salary History, 4) Supervisory References, tions. 5) Copy of Degree(s)/Transcript(s)/Certificate(s). All online applications must be submitted/received by the *DUTIES:* Prepares and analyzes genomic and tran- closing date (11:59 P.M. Hawaii Standard Time/RCUH scriptomic data. Prepares and analyzes metabolomic receipt time) as stated on the job posting. If you do and proteomics data. Prepares scientific manuscripts not have access to our system and the closing date for publication. Advises faculty, graduate students, and is imminent, you may send additional documents to undergraduate students in the analysis and manage- [email protected]. If you have questions on the ap- ment of genomic data on various local and University plication process and/or need assistance, please call of Hawaii (UH) system data storage systems. Provides (808)956-8344. field and laboratory mentorship to TCBES Master’s students and UH Hilo undergraduates. Collaborates EEO/AA Employer. Please apply before 04/04/2015 with Principal Investigators (PIs) on technical writing Dr. Donald Price Director TCBES Graduate Program to include annual and/or interim reports, peer-reviewed Professor of Biology articles, and related works. Science and Technology Building 109 University of *PRIMARY QUALIFICATIONS: EDUCA- Hawaii at Hilo Hilo, HI 96720 TION/TRAINING:* Master’s Degree from an accredited college or university in Genetics, Bioinfor- 808-932-7178 [email protected] matics, or related field. *EXPERIENCE: * Three to http://tcbes.uhh.hawaii.edu/ http://hilo.hawaii.edu/- five (3-5) years of experience in conducting experiments depts/biology/ https://sites.google.com/a/hawaii.edu/- in genomics, genetics, proteomics, and/or metabolomics. price-lab-at-university-of-hawaii/ Donald Price *ABIL/KNOW/SKILLS:* amiliarity with software
PROFESSOR / TENURE-TRACK ASSISTANT PRO- of the K-INBRE Bioinformatics Core is broad, and the FESSOR in bioinformatics The position is shared be- successful candidate can expect to work on a diverse tween the Department of Biosciences, the Department array of problems in a range of systems. The Bioinfor- of Computer Science and the Institute of Biotechnology. matics Specialist would also be able to develop their own The duties of the assistant professor/professor include research program, mentored by, and collaborating with the development of analysis methods for large sets of the many KU research faculty with strong interests in genomic data, and the analysis of the data. The new genome biology (for example, Justin Blumenstiel, John Kelly, Erik Lundquist, Stuart Macdonald). DNA and RNA based genome-wide sequencing analyses require expertise in bioinformatics to handle the data Required qualifications: Masters in biology or computer streams at the species, individual and cellular level so science; Solid understanding of Linux/Unix, and demon- that research groups on the Viikki Campus can fully strated programming experience; A record of published, benefit from the extensive data generated by the new peer-reviewed research. Preferred qualifications include methods. Developing and teaching such expertise in a PhD in biology or computer science, and experience bioinformatics is important for the whole Viikki Cam- with the analysis of next-generation sequencing data. pus, particularly the Department of Biosciences and the Queries about the position can be directed to Stuart Institute of Biotechnology. For the teaching in bioin- Macdonald ([email protected]), director of the facility. Fur- formatics provided by the Department of Computer ther details, and instructions on how to apply for the Science on the Kumpula Campus, the field of this po- position can be found at https://employment.ku.edu/- sition offers an important connection for the dialogue staff/2962BR . The position is open and review of ap- between theory and practice. plications will begin on April 3 and continue until the SEE THE ADVERTISEMENT: position is filled. http://www.helsinki.fi/recruitment/index.html?id=- The K-INBRE Bioinformatics Core is closely associated 3D101212 Arild Husby, Assistant Professor Department with the Departments of Molecular Biosciences and Ecol- of Biosciences (Biocenter 3, office 5415), University of ogy and Evolutionary Biology, the Center for Computa- Helsinki PO box 65, FI-00014 Helsinki, Finland tional Biology, and with the NIH COBRE-funded Center for Molecular Analysis of Disease Pathways. The Univer- web: http://blogs.helsinki.fi/husby/ mail: ar- sity has a strong group of model organism (Drosophila, ild.husby@helsinki.fi office phone: +358294157691 C. elegans) genetics and genomics researchers, and a [email protected] number of quantitative and evolutionary genetics labs. The broad range of questions in evolutionary and com- putational biology addressed by KU labs provides an active, collaborative environment for research. KU is an EO/AAE. All qualified applicants will receive UKansas Bioinformatics consideration for employment without regard to race, color, religion, sex (including pregnancy), age, national origin, disability, genetic information or protected Vet- eran status. Genome Analysis and Bioinformatics Specialist K-INBRE http://www.k-inbre.org/ Stuart Macdonald The University of Kansas is recruiting a research scien- http://molecularbiosciences.ku.edu/stuart-j-macdonald tist with expertise in genomics and bioinformatics. The Department of Molecular Biosciences http://- position is associated with the NIH-funded K-INBRE molecularbiosciences.ku.edu/ Department of Ecology (Kansas IDeA Networks of Biomedical Research Excel- & Evolutionary Biology http://eeb.ku.edu/ Center lence) Bioinformatics Core, directed by Stuart Macdon- for Molecular Analysis of Disease Pathways http://- ald. cmadp.cobre.ku.edu/ KU Genome Sequencing Core We are seeking applications from dynamic, motivated http://gsc.ku.edu/ ### Dr. Stuart J. Macdonald individuals interested in providing computational bi- Director, K-INBRE Bioinformatics Core Facility ology and statistical expertise to help KU researchers Department of Molecular Biosciences 4043 Haworth develop and analyze genomics projects. The Bioinfor- Hall 1200 Sunnyside Avenue University of Kansas matics Specialist will work closely with the KU Genome Lawrence KS 66045 ### office: 785-864-5362 lab: Sequencing Core facility to support investigators as they 785-864-5777 fax: 785-864-5321 email: [email protected] design genome biology experiments, particularly those ### that involve Illumina sequencing data. The user base 62 EvolDir April 1, 2015 [email protected]
UMiami MolResTech ULausanne parttime MarineMammals EvolutionaryMicrobiol
Job Title: Sr. Research Associate 1 Pay Grade: 8 Pay Band Min / Max: $42,697.00 - $77,135.00 Position Num- Microbiologist at the University of Lausanne (50% to ber: 051168 Department / Hospital: COOP INST FOR 60% employment) MARINE AND ATMOS STUDIES The Department of Fundamental Microbiology at the A web-based version of this job advertisement can be University of Lausanne in Switzerland is looking to hire found at http://um.hodesiq.com/job detail.asp?JobID= a research associate to work on the evolution of social 4997310&user id=&ViewAll The University of Miami is interactions between bacterial species. The goal of the committed to educating and nurturing students, creat- project is to disentangle fitness effects over short and ing knowledge, and providing service to our community evolutionary time-scales between five species of bacteria and beyond. We are leaders in the area of education, that are used for biodegradation. The candidate will be scholarship, intercollegiate athletics and service. Come employed part-time (50% to 60% ) for a period of 2 to join our team! 3 years. The Cooperative Institute for Marine and Atmospheric The candidate should: - have obtained a Master’s degree Studies (CIMAS) of the University of Miami invites in biology (or equivalent) - possess skills in basic micro- applicants for a Sr. Research Associate I position in Ma- biology (required), molecular biology and microscopy - rine Biology and Fisheries. We seek a research associate have an interest in researching microbial ecosystems - to join our group and work as a laboratory technician have good English language skills (written and oral) - in the Marine Mammal Molecular Genetics laboratory. be motivated, autonomous and organized - be open to The incumbents primary focus will be collecting and developing and learning new skills and techniques analyzing DNA sequence and microsatellite data from The candidate’s main responsibilities will be to: - design a variety of marine mammal populations and species. and conduct basic microbiology experiments (bacterial Candidates for this position should have (1) a Masters cultures, quantification, etc.) - genetic modification of degree in Molecular Biology, Biology or related field bacteria - design, conduct and follow long-term (months) (2) demonstrated experience with molecular biological evolutionary experiments - design and conduct exper- techniques, particularly DNA extractions and DNA se- iments using microfluidic devices attached to a micro- quencing or microsatellite genotyping methodologies, (3) scope - analyze data - train and supervise interns - some experience with analyses of population structure manage laboratory and biologicalmaterial and diversity from genetic data, and (4) the ability and Employment will begin in July 2015 (flexible) desire to work as part of a collaborative team, (5) excel- If interested, please send: - a motivation letter - an up- lent problem solving and critical thinking skills, good to-date CV - a copy of your latest graduation certificate organizational skills and the ability to plan daily duties. - contact information for 2 references The position will be located at the NOAA Fisheries to: Sara Mitri Department of Fundamental Microbi- Southeast Fisheries Science Center Protected Resources ology (DMF) University of Lausanne, Switzerland E- and Biodiversity Division located in Lafayette, LA. Start mail:[email protected] Tel: +41(0)21 692 56 12 http://- date is flexible, but ideally around 11 May 2015. unil.ch/dmf/home/menuinst/research-units/mitri.html APPLY ONLINE FOR POSITION #051168 at: Application deadline: April 30th, 2015. www.miami.edu/careers. Curriculum Vitae and the Seeking to promote an equitable representation of men contact information for 3 people who can provide letters and women among its staff, the University encourages of recommendation are required. applications from women. The University of Miami offers competitive salaries and [email protected] a comprehensive benefits package including medical and dental benefits, tuition remission, vacation, paid holi- days and much more. April 1, 2015 EvolDir 63
The University of Miami is an Equal Opportu- infrastructure, and strengthen educational opportunities nity Employer - Females/Minorities/Protected Veter- across the spectrum of biomedical informatics. The IBI ans/Individuals with Disabilities are encouraged to ap- will integrate informatics disciplines including bioinfor- ply. Applicants and employees are protected from dis- matics, translational bioinformatics, clinical informatics, crimination based on certain categories protected by clinical research informatics, consumer health informat- Federal law. ics, and public health informatics. Patricia Rosel - NOAA Federal Successful applicants will have strong training and skills
The Department of Biology at Willamette University 1. A cover letter describing your interest in the posi- welcomes applications for a non-tenure-track, visiting tion. 2. A copy of your CV 3. A teaching statement assistant professor position to begin August 2015. The describing your teaching philosophy and practice, and appointment will be for one year, with potential for identifying advanced courses that you would be inter- renewal up to three years depending on successful teach- ested in teaching. 4. A research statement describing ing. your current and future research goals, and how you might involve undergraduates in your work. 5. A diver- We are seeking a broadly trained biologist who is sity statement describing your experience with diverse strongly committed to excellence in both teaching and populations and importance of diversity in teaching and research in a liberal arts college environment. The suc- research communities. 6. Copies of your graduate tran- cessful candidate will be expected to teach 6 course units scripts. 7. Three reference letters that address both a year (1.0 unit/lecture, 0.5 unit/lab). The teaching research and teaching potential.* assignments will include an introductory non-majors biology course (BIOL 110 Principles of Biology) and *As part of the online application, please include three an introductory course for biology majors in (Biology references and notify them that they will be contacted 125 Ecology, Evolution, and Diversity). The candidate electronically. The email from Human Resources will in- will also be asked to teach intermediate and advanced clude a link where they will be able to submit a letter of courses in his or her area of expertise. These might recommendation/reference on your behalf. Please note include: General Ecology, Evolutionary Biology, Molec- letters will only be accessible to the search committee. ular Ecology, or Behavioral Ecology. Course sizes range Inquiries may be addressed to: from 12 to 48 students. David Craig, Search Chair Biology Department Teaching in our department is inspired by Vision and 66 EvolDir April 1, 2015 [email protected]. academic year is divided into two semesters, beginning in late August and ending in May. The academic un- Open until finalists are selected. For full consideration, all application materials should be received by March dergraduate profile is competitive, with a GPA of 3.75 30, 2014. and average composite SAT scores of 1850. Recent stu- dents have received prestigious NSF, Watson, Truman, If you need assistance applying for this posi- Fulbright, and Goldwater fellowships. tion please contact Human Resources, human- Salem is located in the center of the Willamette Valley, [email protected] or 503.370.6210 approximately an hour’s drive from the Pacific Coast, Willamette University, founded in 1842, is the old- the Cascade Mountains, and the cities of Portland and est institution of higher education in the Far West. Eugene. To learn more about Willamette University, Willamette University is a selective residential liberal / arts college in the heart of the Willamette Valley. Situ- ated in Oregon’s capital city, Willamette includes the College of Liberal Arts (approximately 2000 students), This message has been arbitrarily truncated at 5000 characters. and graduate programs in Law and Management. The To read the entire message look it up at http://life.biology.- mcmaster.ca/˜brian/evoldir.html
Other
Australia Cairns VolFieldAssistant FairyWrens . . . . 66 RohlfMedal 2015 CallNominations ...... 71 Cairns Australia VolFieldAssist FairyWrens ...... 67 SenseOfLife ...... 71 EvoDevoEcoNetwork Funding ...... 67 SocSystBiology GraduateStudentAward ...... 72 GainesvilleFL VolFieldAssist Anole ...... 68 Software DAMBE update ...... 72 Gene Flow Rates ...... 68 Transport blood samples ...... 73 LiveStreaming EvolMedMeeting ...... 68 Transport blood samples answers ...... 73 Namibia VolFieldAssist BaboonEvolution ...... 69 UMichigan BioStation SummerResearch ...... 74 NESCent 2015 VideoContest 2 ...... 70 Omenn Prize winner announced ...... 70
monitor a colour-banded population of lovely fairy-wrens in Cairns (Queensland), Australia for a study on female ornamentation. Australia Cairns VolFieldAssistant Time periods: June or September 2015 (3 to 6 months). FairyWrens Duties include regular censusing of colour-banded birds, searching for and monitoring nests, mist-netting, record- ing song and measuring colouration, behavioural ob- Volunteer field assistants: servations, video analysis, and data proofing. Working We are looking for field assistants to help expand and April 1, 2015 EvolDir 67 days are long, with early starts six days a week. Enthu- to work in extreme weather conditions, and enjoy ba- siasm, self-motivation and organisation, and a strong sic shared living conditions. Having experience in be- work ethic are a must. havioural observations and a driving licence is a plus Qualifications: experience monitoring colour-banded but not a requirement. birds, nest-searching, and mist-netting. Good knowl- Accommodation is provided, but assistants cover travel edge of English is a requirement. Must also be early to the site and their own food costs. The project will riser, physically fit, able to work in extreme weather reimburse up to AUD$750/mo towards receipted food conditions, and enjoy basic shared living conditions. and travel expenses. For more information contact: Ana Having experience in behavioural observations and a Leitao (avitorinoATstudent.unimelb.edu.au). To apply, driving licence is a plus but not a requirement. please email a letter outlining previous relevant field Accommodation is provided, but assistants cover travel research experience, and a CV including names and contact information for 3 referees. Applications received to the site and their own food costs. The project will reimburse up to AUD$750/mo towards receipted food until the 9th of April 2015 will receive full consideration. and travel expenses. For more information contact: Ana Later applications may be considered. Leitao (avitorinoATstudent.unimelb.edu.au). Ana V. Leit˜aoPhD candidate School of BioSciences (Building 147) University of Melbourne, Parkville, VIC To apply, please email a letter outlining previous relevant 3010 Australia field research experience, and a CV including names and contact information for 3 referees. Applications received [email protected] avi- until the 9th of April 2015 will receive full consideration. [email protected] Later applications may be considered. [email protected] Ana V. Leit˜aoPhD candidate School of BioSciences (Building 147) University of Melbourne, Parkville, VIC 3010 Australia [email protected] avi- [email protected] EvoDevoEcoNetwork Funding Australia: +61 450 643 982 Portugal: +351 964 479 857 [email protected] RESEARCH FUNDING OPPORTUNITY: Dear Colleague, This email is to remind you that the upcoming deadline for research exchange grants from the Evo-Devo-Eco Cairns Australia VolFieldAssist Network (EDEN) is April 30, 2015. EDEN is funded by FairyWrens the National Science Foundation Research Coordination (http://edenrcn.com/). One of EDENs major goals is to enable graduate stu- *Volunteer field assistants:* dents, postdoctoral fellows, and faculty to undertake We are looking for field assistants to help expand and research exchanges in the field of Evo-Devo-Eco, in order monitor a colour-banded population of lovely fairy-wrens to develop or share techniques, protocols and tools for in Cairns (Queensland), Australia for a study on female use with emerging model systems. ornamentation. Time periods: June or September 2015 Please note that the updated eligibility for EDEN fund- (3 to 6 months). Duties include regular censusing of ing is as follows: Researchers based anywhere in the colour-banded birds, searching for and monitoring nests, world can apply for funding to visit labs in the US. mist-netting, recording song and measuring colouration, behavioural observations, video analysis, and data proof- Researchers based in the US are eligible for funding to ing. Working days are long, with early starts six days visit labs anywhere in the world. a week. Enthusiasm, self-motivation and organisation, This spring EDEN will award multiple research ex- and a strong work ethic are a must. Qualifications: ex- changes to be held in 2015-2016. Each exchange will perience monitoring colour-banded birds, nest-searching, consist of an award of up to $3,000 per researcher to- and mist-netting. Good knowledge of English is a re- ward travel, lodging and subsistence costs. You can find quirement. Must also be early riser, physically fit, able out more about this program at http://edenrcn.com/- 68 EvolDir April 1, 2015 funding/index.html. If you know of outstanding lab personnel who would be interested, please forward this announcement to them. You can read more about EDEN’s activities and oppor- tunities at http://www.edenrcn.com, where you will be Gene Flow Rates able to obtain protocols for evo-devo-eco work developed with EDEN funding. Please feel free to email [email protected] with Dear Evoldir, questions about the program, and forward this email to We are analyzing a dataset sampled from several ge- colleagues who you think would be interested in EDEN. ographic locations (let’s say A,B,C,D,E,F). We would Best wishes, like to infer if there is evidence for a specific direction of gene flow and determine the gene flow rates... e.g. Cassandra Extavour B–>C–>A–>D–>E–>F and if possible to exclude some EDEN Grants
Charlie Nunn8:15 8:30 8:45Short break Chair: Gillian scores ”16:45Jacobus (Koos) Boomsma, University Bentley9:00Joe Alcock, University of New Mexico, of Copenhagen, “Parent-of-origin gene-dosage effects “Identifying normal function in abnormal results: in the womb may affect physical and mental health Reaction norms lead to a new normal for medical later in life ”17:00Baba Brinkman-Rap Preview & practice”9:15Gillian Pepper, Newcastle University, “ RapUp17:15Flash talks Chair: Marlene Zuk17:30 Extrinsic mortality risk and socioeconomic differences 17:45Poster session/ Appetizers18:00La Paz & Cochise in health behaviour: observational and experimental evi- rooms18:15 18:30 18:45 19:00 19:15Education and dence ”9:30Harvey Kliman, Yale University, “The pelvis Outreach Committee Meeting19:30at Engrained Patio skull conflict: why trophoblast inclusions are a marker at the Memorial Union 19:45 20:00 20:15 of autism and may be the evolutionary basis of human Randolph M. Nesse, MD < http://randolphnesse.com/ intelligence.” 9:45Anne Stone, Arizona State University, > The ASU Center for Evolution & Medicine < “Mycobacterium tuberculosis: origins and evolutionary https://sites.google.com/a/asu.edu/cemph/ > Full history of a major pathogen. ”10:00Martin H¨ausler, ISEMPH Conference Program available here < University of Zurich, “Are musculoskelatal disorders http://issuu.com/evmedasu/docs/program for web?e=- evolutionary trade-offs of bipedalism”10:15Break10:30 3D15964791/11852215 > Chair: Daniel Lieberman10:45Welcome remarks by Dean Garcia-Pichel and Manfred Laubichler (on [email protected] behalf of Provost Page)11:00Marlene Zuk, Univer- sity of Minnesota, “Evolution in sickness and in health”11:15Frank Ruhli, University of Zurich, “Evo- lutionary medicine as part of the medical curriculum in Switzerland and Australia: a qualitative and Namibia VolFieldAssist quantitative feedback ”11:30Mark Schwartz, NYU School of Medicine, “Integrating evolutionary science BaboonEvolution into medical education ”11:45Michael Muehlenbein, Indiana University, “Survey on evolution in health education” 12:00Lunch at Memorial Union at ASU12:15 Hello, 12:30 12:45 13:00Harvey Fineberg President, Gordon and Betty Moore Foundation Keynote: “Evolution in We are recruiting field assistants for the 2015 field sea- Medicine: Past, Present, and Future”13:15Introduction son on the Tsaobis Baboon Project. We have prevously by: Randolph Nesse13:30 13:45Short break Chair: used this website to annunce the position and would Robert Perlman14:00Michael Gurven, UC Santa like to do it again since we found it very useful. The ad- Barbara, “Costs of reproduction in a high fertility vert and the “graphical ad” are written (and attached) and mortality population”14:15Grazyna Jasienska, below. We would be so grateful if you could post this Jagiellonian University, “Trade-offs between reproduc- announcement on the EvolDir website. tion and aging: biomarkers, confounders and genetic Kind Regards, factors”14:30Katie Hinde, Harvard University, “Insights into co-evolution of milk and microbes: subsistence Claudia Martina Luna strategy predicts glycan profile in breast milk among Large Animal Research Group Department of Zoology diverse human populations”14:45Daniel Lieberman, University of Cambridge Downing Street Cambridge Harvard University, “An evolutionary medical perspec- CB2 3EJ E: [email protected] tive on shoes”15:00Allen Rodrigo, NEScent, “Neutral *Tsaobis Baboon Project Volunteer Field Assistants* models of microbiome evolution”15:15Break15:30 Chair: Ajit Varki15:45Sudhir Kumar, iGEM Tem- The Tsaobis Baboon Project is a long-term study of ple, “Phylomedicine: Evolutionary Lessons and desert baboons in Namibia. Based at the Institute of Solutions for Genomic Medicine”16:00David Haig, Zoology (the research arm of the Zoological Society Harvard University, “Microchimerism and inclusive fit- of London), and affiliated with the Gobabeb Research ness”16:15Elizabeth Uhl, University of Georgia “Origin and Training Centre (Namibia), our aim is to carry of canine distemper as a reverse zoonosis from human out fundamental research in behavioural ecology and measles: insights from history, evolution and studies of population ecology, and to inform conservation policy codon usage bias”16:30Bernard Crespi, Simon Frazer and practice for social species. University, “Imagination as a core diametric phenotype We are seeking to appoint four 3-month volunteer field- of autism spectrum and psychotic-affective spectrum worker positions between 1 July and 30 September 2015. conditions: evidence from schizophrenia genetic risk The fieldwork will primarily involve daily follows of ba- 70 EvolDir April 1, 2015 boon troops on foot, collecting behavioural data from & Outreach National Evolutionary Synthesis Center individually recognisable animals and their associated (NESCent) 2024 West Main St., Suite A200, Durham, ecological conditions. Further information about the NC 27705 Phone: 919.668.4578 Fax: 919.668.9198 Email: Tsaobis Baboon Project, the volunteer fieldworker posi- [email protected] Skype: jory.weintraub tions, and the application procedure can be found on “Weintraub, Jory P”
The $5000 Gilbert Omenn prize for the best paper in NESCent 2015 VideoContest 2 evolutionary medicine in 2014 goes to, “Escape from bac- terial iron piracy through rapid evolution of transferrin” by Matthew Barber and Nels Elde from the University of NESCent/HHMI/SSE Evolution Film Festival/Video Utah. The article appeared in Science 346:1362-6, 2014. Contest First author Matthew Barber, a postdoctoral student, will receive the prize and present a talk on March 21 at Scientists and science educators of all stripes - students, the 2015 ISEMPH meeting in Tempe Arizona. http://- postdocs, faculty, and full- or part-time science commu- evmedmeeting.org The prize is made possible by a gen- nicators - are invited to enter the Fifth Annual Evolution erous donation from Gilbert Omenn and is awarded by Video Competition, sponsored by the National Evolu- the International Society for Evolution, Medicine, and tionary Synthesis Center (NESCent), Howard Hughes Public Health for best article published each year on a Medical Institute (HHMI) and the Society for the Study topic related to evolution in the context of medicine and of Evolution (SSE). To enter, please submit a video public health. Full details at http://evmedreview.com/- that explains a fun fact, key concept, compelling ques- ?p=2504 and at http://evolutionarymedicine.org tion, or exciting area of evolution research in THREE MINUTES OR LESS. The Prize Committee “Sarah Tishkoff, Joe Alcock, Noah Rosenberg, and Alison Galvani” also selected three pa- Entries may be related or unrelated to your own research, pers for honorable mention. They are listed below in and should be suitable for use in a classroom (K-12, un- alphabetical order. dergraduate, graduate...your choice). Videos should be both informative and entertaining. (In other words, no Byars, Sean G., Stephen C. Stearns, and Jacobus J. taped lectures or narrated Powerpoint presentations!) Boomsma. “Opposite risk patterns for autism and Animations, music videos, and mini documentaries are schizophrenia are associated with normal variation all fair game. in birth size: phenotypic support for hypothesized diametric gene-dosage effects.” Proceedings of the The finalists will be screened at the 2015 Evolution Royal Society B: Biological Sciences 281.1794 (2014): meeting in Guaruj´a,Brazil. (You do not need to attend 20140604.been difficult to unravel using standard ap- the conference in order to enter a video.) proaches. In the past, our first-place and runner-up prizes were Pennings, Pleuni S., Sergey Kryazhimskiy, and John $1,000 credit and $500 credit, respectively, towards Wakeley. “Loss and recovery of genetic diversity in travel to a future conference. This year, the prizes adapting populations of HIV.” PLoS genetics10.1 (2014): will be the same amount, but in cold, hard, cash-money, e1004000. baby! (Well...actually, in the form of a check, but you get the idea.) So make a video, and we’ll make it rain! Warinner, Christina, et al. “Pathogens and host immu- nity in the ancient human oral cavity.” Nature genetics The deadline to submit your video(s) is SUNDAY, MAY 46.4 (2014): 336-344. 31st, 2015 (11:00 PM, EST). Please join the Society in congratulating the authors For more information (and to see entries from previ- of the winning and runner up articles. Nominations ous years) please visit filmfestival.nescent.org or contact for next year’s prize will be received starting early in Jory Weintraub ([email protected]). 2016. The Society also sponsors the $5,000 George C. Jory P. Weintraub, PhD Assistant Director, Education Williams Prize for the best paper published each year April 1, 2015 EvolDir 71 in the Society’s flagship journal, Evolution, Medicine (4) the names and addresses of three referees. and Public Health. All papers published in the jour- Nominating packages should be uploaded to the nal in 2015 will have author’s fees waived and will be Rohlf Medal website (http://life.bio.sunysb.edu/ee/- automatically entered into the Prize competition. rohlf medal/apply.html) and received by 5 pm, EST, 15 Randolph M. Nesse President, The International Society July 2015 to be assured of full consideration. for Evolution, Medicine, & Public Health The successful candidate will receive the Rohlf Medal [email protected] and a cash prize at Stony Brook University, planned for October 26th, 2015. She or he will deliver a lecture that is appropriate for a broad audience, ranging from the exact sciences to the humanities, concerning the morphometric methodology, software, or findings for which the Rohlf Medal was awarded RohlfMedal 2015 CallNominations Paul O’Higgins Professor of Anatomy Centre for Anatomical & Human Sciences Department of Archae- 2015 CALL FOR NOMINATIONS ology and Hull York Medical School University of York Heslington York YO10 5DD U.K. The Rohlf Medal T: +44 (0) 1904 328872 E: [email protected] W: The Rohlf Medal was established in 2006 by the family http://research.hyms.ac.uk/researchcentres/cahs Paul and friends of F. James Rohlf to mark his 70th birthday. O’Higgins
Sincerely, [email protected]. IN THE SUBJECT LINE OF THE E- MAIL, PLEASE INDICATE “Student Research” FOL- Ben Roberts LOWED BY FIRST INITIAL AND LAST NAME. Ben Roberts
PostDocs
AMNH NewYork BioinformaticsComputationalBiology UEastAnglia Bioinformatics ...... 95 75 UFlorida AppliedEvolutionaryPhysiology ...... 96 ClemsonU ComputationalGenomics ...... 76 UHaifa PhD PDF Phylogenetics ...... 97 DesMoinesU Paleobiology ...... 77 UJyvaskyla HumanSocialBehavior ...... 97 HarvardU BioMath InfectiousDisease HIV ...... 78 ULausanne Bioinformatics ...... 98 IBG2 Germany CropEvolutionDomestication ...... 78 UManchester TraitVariationGenetics ...... 99 IISER-TVM Kerala India EvolutionaryEcol ...... 79 UMissouri DinosaurCranialBiomechanics ...... 100 ImperialCollegeLondon SpeciationPopulationGenomics UMontana EvolutionaryGenomics SexualSelection 100 79 UNamur Belgium Bioinformatics ...... 101 KielU MicrobialEvolutionaryGenomics ...... 80 UNewEngland Australia PlantSpeciationGenomics 102 Lausanne GenomicsSocialPolymorphism ...... 81 UNewHampshire BeeSociogenomics ...... 103 Lyon Epigenetics GenomeStability ...... 81 UNotreDame MalariaComputBiol ...... 103 MonashU EvolutionaryGenetics ...... 82 UOregon BioinformaticsHostMicrobe ...... 104 MonashU TelomereEvolution ...... 82 UOregon MicrobialEcology Bioinformatics ...... 105 MountSinai StatisticalGenomics ...... 83 UOregon MicrobialEcologyEvolution ...... 105 NorthCarolinaStateU MosquitoPopGenetics ...... 83 UOslo 3yr AvianHybridization ...... 106 OklahomaStateU ComputationalQuantitativeGenomics UOtago EvolutionaryGeneticsZosterops ...... 106 84 UOtago NZ GenomicsComplexCognition ...... 107 OmahaZoo MadagascarBiodiversityGenomics ...... 85 UOulu PopulationStatisticalGenomics ...... 108 Oslo FungalMolecularEvol ...... 86 UPernambuco Brazil EvolutionaryBiol ...... 108 PennsylvaniaStateU CoralEvolution ...... 86 UPittsburgh Plant-PollinatorInteractions ...... 109 PurdueU SalmonidEvolution ...... 86 USDA ARS Gainesville PopulationGenomics . . . . . 109 QUT Brisbane Australia MammalEvolution DNA mor- USheffield PlantPopGenomics ...... 110 phologyFossils ...... 87 UToledo FishGenomics ...... 110 Rostock Germany Bioinformatics ...... 88 UUtah Evolutionary GeneticsGenomics Development SangerInst ParasiteGenomics ...... 88 111 Senckenberg Frankfurt CommunityEvolution ...... 89 UUtah HerbivoreMicrobiomeBiodiversity ...... 111 SLU Sweden PlantPathogenEvolution ...... 90 UUtah PlantAnimalMolEvol ...... 112 SwanseaU SalmonEpigenetics ...... 90 UVermont LoyolaU ChagasGenomics ...... 112 Toronto PopulationGenomics ...... 91 UVirginia EvolutionaryGenomics ...... 113 UAberdeen AvianMatingSystems ...... 91 UWashington PlantFrugivoreCoevolution ...... 114 UArizona 2 GenomicsInvasivePlantAdaptation . . . . 92 UWisconsin Madison PlantQuantGenet ...... 114 UBath EvolutionaryGenomics SocialMicrobes . . . . . 93 Vienna 6 EvolutionaryBiology ...... 115 UCDavis DevelopmentalEvolutionaryGenomics . . . . 93 Wageningen MicrobialSyntheticBiol ...... 116 UChicago EvolutionaryGenomics ...... 94 UCollege London TetrapodEvolution ...... 94
The American Museum of Natural History seeks highly qualified applicants for its Gerstner Postdoctoral Fellows program in Bioinformatics and Computational Biology. AMNH NewYork Bioinformatic- Successful applicants must be able to work effectively in sComputationalBiology applying innovative techniques to pursue independent and collaborative bioinformatics and computational re- search in integrative studies of genomics or spatial bioin- formatics or biodiversity informatics, alongside faculty American Museum of Natural History Postdoctoral Fel- and other researchers interested in phylogenetics, phy- lowships in Bioinformatics and Computational Biology 76 EvolDir April 1, 2015 logeography, evolutionary studies, and phenomics (the curriculum vitae, with names of at least 2 references; and use of high-throughput computational methods to ana- 4) PDF files of up to five recent publications, or other lyze morphological, physiological, and other phenotypic documentation of relevant accomplishments in bioin- form and function). Fellows also will participate in formatics/computational biology. Applicants also must the design, development and implementation of new arrange for 2 academic reference letters to be sent by the algorithms, bioinformatics tools and infrastructure and due date to [email protected] (Subject computational methods to facilitate genomic assemblies line: 2015 Gerstner Bioinformatics-Computation Post- and analyses, as well as developing methods to catalyze doc Reference Letter: applicant name). DUE DATE: ongoing synthesis of phylogenetic information and ad- April 27, 2015. dress ’big data’ issues from a computational perspective. The American Museum of Natural History is an Equal A portion of each Fellows’ efforts also will include: 1) Opportunity/ Affirmative Action Employer. The Mu- teaching, training and workshops, 2) research collabora- seum encourages Women, Minorities, Persons with Dis- tion with and assistance to faculty, postdoctoral fellows, abilities, Vietnam Era and Disabled Veterans to apply. students, and other Museum colleagues in accessing in- The Museum does not discriminate due to age, sex, cluding data storage, retrieval, and assembly; and 3) religion, race, color, national origin, disability, marital maintaining software and related resources. status, veteran status, sexual orientation, or any other The initial appointment will be for one year, poten- factor prohibited by law. tially renewable for one to two additional years based Anna Manuel
(TRIVANDRUM): The coastal city of Thiruvanantha- puram is the capital of Kerala, and has a rich cultural heritage. It is within a stone’s throw away from world- famous beaches such as Kovalam and Varkala, and lovely IISER-TVM Kerala India backwater tourism areas such as Poovar. Several hill stations (e.g Ponmudi) and wildlife sanctuaries are close EvolutionaryEcol by. Being a major medical tourism destination, the city has excellent medical care facilities. It is a relatively small city, and the cost of living tends POSTDOCTORAL POSITION AT IISER- to be considerably lower than in bigger Indian cities. A THIRUVANANTHAPURAM, KERALA, INDIA. 2-bedroom apartment can be had for Rs 8,000 - 10,000 A postdoctoral position in Evolutionary Ecology is avail- per month. There are plenty of options for dining out - able at IISER Thiruvananthapuram, Kerala, India, in a meal at a decent local restaurant can start from Rs 50, the Vanasiri Evolutionary Ecology Group of Ullasa Ko- but a good meal with a drink even in a five-star hotel dandaramaiah (www.vanasiri.in) usually costs less than Rs 1000. Costs for groceries and DEADLINE: Screening of applications will start April other daily needs can be looked up here (www.kada.in). 30th, but will continue until a suitable candidate is Taxis can be hired from Rs 10 per km (with a mini- found. mum fare of Rs 50), while the cost of driving your own small car (not for the faint-hearted!) is about Rs 5 per SALARY: Rs. 43,200 - 48,000 per month (including kilometer (petrol: Rs 67/litre, diesel: Rs 55/litre). Housing Rent Allowance; commensurate with experi- ence) Ullasa Kodandaramaiah [email protected] RESEARCH SUBJECT(S): Our research group works on various questions within evolutionary ecology in- cluding prey-predator interactions, insect-hostplant co- evolution, parasite-host co-evolution, biogeography, phy- logeography, population genetics, etc. More information ImperialCollegeLondon at www.vanasiri.in/research. Currently used model sys- SpeciationPopulationGenomics tems include different insects (primarily butterflies), plants and reptiles. Collaborations with candidates who can design projects –Apple-Mail= 7AE1A3EE-185A-4316-A805- that complement ongoing work in the group are welcome. BAEC39417C6B Content-Transfer-Encoding: quoted- I also welcome collaborations with candidates through printable Content-Type: text/plain; charset=windows- projects on new kinds of questions, and/or new model 1252 organisms, which will enrich research in our group. The Postdoctoral Research Associate in Evolutionary Ge- permanent campus of IISER Thiruvananthapuram is an outstanding location (see www.vanasiri.in/facilities) for nomics ecological and evolutionary studies. Department of Life Sciences, Imperial College London, You are encouraged to contact me informally (ul- United Kingdom. [email protected]) to discuss your ideas and their fea- Salary: £33,410 - £42,380 per annum (maximum start- sibility before sending in your formal application. ing salary £35,190 per annum) SELECTION: Selection will be based on the scientific Closing date: 24 April 2015 (midnight BST) credentials of the candidate (needless to mention, a PhD This is an exciting opportunity for a Research Associate is a must), quality of the research proposal and feasibil- with interests in speciation and evolution. The success- ity of carrying out the research proposal. The formal ful candidate will carry out cutting edge research on the advertisement, including details about how to apply is genetic mechanisms of ecological speciation in a well- here http://iisertvm.ac.in/openings/read opening/115 known group of anciently asexual animals, the bdelloid DURATION: The initial contract will be for 1 year, rotifers. You will sequence whole genomes for related but can be extended to 2 years based on performance. bdelloid species living in different habitats and use pop- The selected candidate is expected to join as soon as ulation genomic analyses to test alternative mechanisms possible. behind their divergence. The work will involve bioinfor- LIFE IN KERALA AND THIRUVANANTHAPURAM matics, statistical methods in population genomics and 80 EvolDir April 1, 2015 computer models. You will work closely with a Research (0)207 594 2247 Fax: +44 (0)207 594 2339 Web-page: Technician who will conduct molecular labwork. www.imperial.ac.uk/people/t.barraclough –Apple- The position is funded for up to 3 years by the Natural Mail= 7AE1A3EE-185A-4316-A805-BAEC39417C6B Environment Research Council and will be based at the Content-Transfer-Encoding: quoted-printable Silwood Park Campus. The successful candidates will work closely with Professor Tim Barraclough and his research group. You must have a PhD or equivalent qualification in evo- lution, ecology, genetics or a closely related discipline, KielU and one or more first author (or joint first author) pub- MicrobialEvolutionaryGenomics lications. The successful candidate will have expertise in population genomics and/or statistics and modelling with a strong interest in evolutionary biology. Experi- The Genomic Microbiology Group at the Institute of ence of bioinformatics including scripting and/or pro- Microbiology in Christian-Albrechts University of Kiel, gramming is essential. While not essential, experience of Germany, invites applications for: handling and archiving large datasets and experience of Postdoc Position in Microbial Evolutionary Genomics genome assembly and/or population genomics analysis, would be an advantage. The Genomic Microbiology Group research interests are focused on microbial genome evolution with an em- You must have experience of working in a team, be able phasis on the study of DNA acquisition dynamics in to develop and apply new concepts and have a creative natural environments. In our research we use both approach to problem-solving. You must also have ex- computational and experimental approaches (see http:/- cellent verbal and written communication skills and be /www.mikrobio.uni-kiel.de/de/ag-dagan). The working able to write clearly and succinctly for publication. language of the group is English. Further details of the research group can be ob- The position offers the opportunity to develop an in- tained from the research group website: http://- dependent research profile within the group research www3.imperial.ac.uk/people/t.barraclough. For more focus. In addition, the successful applicant is expected information or with queries, contact Tim Barraclough to consult MSc and PhD biology students in the analysis at [email protected]. of genomic data and participate in teaching of genomics Our preferred method of application is online via our and programming (PERL/Python). website http://www.imperial.ac.uk/employment (please Candidate qualifications: (1) Doctoral or PhD degree select “Job Search” then enter the job title or vacancy in Molecular Evolution, Bioinformatics or related fields; reference number including spaces - NS 2015 053 JT into Post-Doctoral work is an advantage. (2) Knowledge “Keywords”). Please complete and upload an application and experience in the analysis of genomic data. Any form as directed. of following expertise is an advantage: phylogenomics, Alternatively, if you are unable to apply online, please genomics, transcriptomics, programming, biostatistics. contact Mrs Christine Short on 020 7594 2276 or email (3) Good oral and written communication skills (English [email protected] to request an application form. is required, German a plus). (4) Skills and motivation Closing date: 24 April 2015 (midnight BST) to communicate and interact with other scientists. Committed to equality and valuing diversity. We are Applicants should upload curriculum vitae with a list also an Athena SWAN Silver Award winner, a Stonewall of publications, a motivation statement and contact ad- Diversity Champion, a Two Ticks Employer and are dresses of two referees to https://bewperle.uni-kiel.de/- working in partnership with GIRES to promote respect ifam/ . For enquiries regarding the position please con- for trans people. tact Prof. Tal Dagan, email: [email protected] ——————————————————– The position is initially offered for two years at the Ger- Prof. Timothy G. Barraclough, Professor of Evolution- man TV-L E13 pay scale and may be extended up to ary Biology four years. ——————————————————– Application deadline: 15.04.2015 or until the position is Department of Life Sciences, Imperial College London, filled. Interviews will take place during April-May 2015. Silwood Park Campus, Ascot, Berkshire, SL5 7PY, UK The planned starting date for the position is July 2015. E-mail: [email protected] Telephone: +44 Prof. Dr. Tal Dagan April 1, 2015 EvolDir 81
Genomic Microbiology Group Institute of Microbiology sanne Switzerland Christian-Albrechts-University Kiel ZMB, Am Botanis- Office: 3123, Biophore Phone: +4121 692 41 78 Web- chen Garten 11 24118 Kiel, Germany site: http://www.unil.ch/dee/page7642.html Michel Tel: +49 431 880 5712 Fax: +49 431 880 5747 e-mail: Chapuisat
Lyon Epigenetics GenomeStability
Lausanne GenomicsSocialPolymorphism *Post Doctoral position in epigenetics and genome sta- bility, Lyon* We are welcoming applications from enthusiastic and POSTDOCTORAL POSITION, ECOLOGICAL GE- independent post-doctoral candidates to participate in NOMICS OF SOCIAL POLYMORPHISM, LAU- our FRM grant-funded project related to epigenetics SANNE and genome stability. The fellowship is for 2 years and Applications are invited for a Postdoctoral position in should start before June 2015. Applications are accepted until the end of March. the research group of Michel Chapuisat (Department of Ecology and Evolution, University of Lausanne). Our *Background* group studies social evolution, with a focus on the struc- Genomic stability can be disturbed by the activity of ture and evolution of ant societies. Please look at http:/- repeated sequences such as transposable elements (TEs). /www.unil.ch/dee/page7000.html for information and Epigenetic mechanisms allow the silencing of these se- references. quences. As a consequence, the presence of TEs in a We have identified a social chromosome associated with genome may affect the chromatin structure of the re- variation in colony queen number in the Alpine silver gions in which they are inserted. Environmental factors ant Formica selysi (Purcell et al. Cur. Biol. 2014). have also been described as affecting genome stability, We plan to study the origin and maintenance of this namely by affecting the rate of transposition,, and could polymorphism by combining genomic, behavioural and be associated with environment related diseases such as ecological approaches. The focus will depend on the cancer. ** interest and background of the postdoc, and there will *Project* be scope to accommodate personal ideas or projects. The ideal candidate should have a solid background in The purpose of the project is to establish the link be- evolutionary biology and genomics. Experience in one tween TEs, environment and epigenetics. Drosophila or more of the following areas would be an asset: pop- is one of the best-fitted model for this project since we ulation genomics, comparative genomics, genotyping- have an easy access to Drosophila natural variability, by-sequencing, transcriptomics, evolutionary ecology, the species genome is small and harbors low amounts of experimental behavioural ecology. TEs, and it is easily manipulated in the lab. The project consists in the analysis of Drosophila responses to stress The Department of Ecology and Evolution is large and by analyzing chromatin structure, piRNA abundances thriving, and provides excellent facilities for research and mRNA levels, with an emphasis on TEs. and training (see http://www.unil.ch/dee/). *Candidates* Informal enquiries and applications should be sent to [email protected]. Applications should include The applicants are expected to have a strong background a cover letter with a statement of research interests in epigenetics with a confirmed interest in genomics and and qualifications for the position, complete CV with evolutionary biology. Skills in data analysis and/or bioin- publication list, and contact details of three referees, formatics are necessary, but the candidate will benefit embedded in a single pdf file. from the LBBE bioinformatics and statistical environ- ment. The ideal candidate should be highly motivated, Michel Chapuisat curious and enthusiastic to work in a collaborative team. Department of Ecology and Evolution Biophore, Proven ability to identify research objectives and meet Quartier Sorge University of Lausanne CH-1015 Lau- agreed deadlines, self-motivation and flexibility are es- 82 EvolDir April 1, 2015 sential. Excellent written and oral skills in English are The successful candidate should have a PhD in biology or required. a related discipline, a solid track record of independent *Environment* scholarship, including high-quality publications, and good written and verbal communication skills. Strong The host laboratory (LBBE, http://lbbe.univ-lyon1.fr/- quantitative or computational abilities are a plus. Two ) is a stimulating, cosmopolitan and pleasant place to years of support is guaranteed, provided satisfactory work, where one can meet biologists, computer scientists, progress is met, and there are good opportunities for ex- mathematicians and statisticians working on problems tended support beyond the first two years. The position that range from ecology to medicine, through genomics is at the postdoctoral academic level A, with starting and evolution. Lyon is the second largest city in France, salary of ~$75K per year AUD. is famous for its food, is a UNESCO World Heritage site and enjoys a very convenient central location in Europe. The School of Biological Sciences at Monash houses a diverse and interactive group of academics, and the Please send one PDF file to school provides a stimulating and supportive environ- Cristina Vieira [email protected] ment for carrying out research in ecology, evolution
MonashU TelomereEvolution
MonashU EvolutionaryGenetics Post-doctoral RESEARCH FELLOW: Quantitative molecular ecologist Monash University (Melbourne, Aus- Postdoctoral opportunities are available to work with tralia) to study ecology of telomere dynamics in fairy- Tim Connallon, in Monash Universitys School of Bio- wrens Application deadline: 28 March 2015 Start date: logical Sciences (Melbourne, Australia). I have broad between April and Sep 2015 research interests in evolutionary genetics, including the Anne Peters at Monash University, Melbourne, Aus- following areas: tralia, in collaboration with Simon Verhulst, Groningen - The role of genetic constraints in adaptation - The evo- University, The Netherlands, is seeking an experienced lution of sexual dimorphism - Sex chromosome evolution Quantitative Molecular Ecologist to explore the ecology - Population genetic signals of adaptation - Adaptation of molecular senescence (telomere attrition). Telomeres with gene flow - Theoretical population genetics shorten as organisms age and short telomeres are associ- ated with greater predisposition to diseases, accelerated Current research in my group combines theory devel- organismal senescence and shorter lifespan. Telomere opment, analyses of publicly available datasets, and shortening rate is known to vary with external influences quantitative genetics experiments using Drosophila. and individual quality. This project will use longitudinal I am interested in theoretical and empirical projects that sampling of telomere length in individual fairy-wrens, of fit within the general areas mentioned above. There is known age and pedigree. The telomere information will considerable flexibility regarding the specific projects be combined with state of the art statistical methods to that may be undertaken, and these will ideally be de- study telomere dynamics in relation to life-history and signed in collaboration with the successfully candidate. ecology, to disentangle effects of senescence and selective April 1, 2015 EvolDir 83 disappearance, and to assess environmental and genetic effects on telomere attrition rate. As the successful candidate, you will join Anne Peters group studying behavioural and evolutionary ecology of fairy-wrens, based at Monash University (Melbourne, MountSinai StatisticalGenomics Australia). You will be expected to optimise and imple- ment existing qPCR protocols for use in fairy-wrens and apply these to blood/DNA samples ( 2000 longitudinal Stahl Lab | Post-doctoral scientist in statistical/human samples). You will further be expected to maintain genomics consistently high research output in the form of quality Two positions are available, one with a primary focus on publications, supervise and train students, develop and data analysis, and one with a primary focus on genetic submit grant proposals to external funding agencies, modeling and inference methods. Both using GWAS contribute more generally to research activities of the and/or sequence data; range of applications in discovery, group, and participate in appropriate career develop- integration, prediction; any disease area. Focus on med- ment activities. The position (Level A, starting salary ical genetics, evolutionary impacts and implications are ~$75 p.a. with annual increments) is for three years of course relevant. Secondary evolutionary/population subject to satisfactory annual progress. genetic focused projects are welcome/available. Requirements: - A PhD in molecular ecology, with ex- Please see the Stahl Lab Positions web page http://- tensive experience in qPCR, preferably of telomeres - A research.mssm.edu/stahl/positions.html for more infor- publication track record in high-quality journals that mation and how to apply. clearly reflects the ability to conduct and publish re- search in the field of molecular ecology - Demonstrated The Stahl Lab is part of the Center for Statistical Genet- evidence of a strong interest in applying state-of-the- ics (Dir. Shaun Purcell), in the Division of Psychiatric art molecular methods to current evolutionary and eco- Genomics (Chief Pamela Sklar). logical questions with meticulous attention to detail Thank you and high quality lab work - Strong quantitative skills in the R-environment are highly advantageous, especially Eli A. Stahl, PhD Assistant Professor Center for Statisti- animal modelling framework - Ability to work indepen- cal Genetics, Division of Psychiatric Genomics Institute dently in a collaborative research team - Experience in for Genomics and Multiscale Biology, Department of Ge- or enthusiasm for supervision and training of students netics and Genomic Sciences Icahn School of Medicine - Experience in developing and submitting grant pro- at Mount Sinai New York, NY posals - Ability to communicate effectively with other [email protected] scientists at the interface of lab and field ecology - Strong command of English For further details about the host and institution see: https://sites.google.com/site/petersresearchgroup/ http://monash.edu/science/about/schools/biological- NorthCarolinaStateU sciences/ and http://www.rug.nl/staff/s.verhulst/ Send MosquitoPopGenetics a letter that addresses these requirements and includes a brief statement about why you are interested in this post-doc plus a full academic CV that includes including the names and contact details (email, phone) of 2-3 Postdoc: Modeling Population Genetics for Suppression references, to Anne Peters ([email protected]) of Mosquito-Vectored Diseases by the closing date of 28 March 2015. PROJECT DESCRIPTION: Dengue is a mosquito- Anne Peters
* A cover letter addressing research interest, experience rience in genome assemblies, annotation and analysis of and skills that fulfill the requirements * A full C.V. * next generation sequencing (NGS) are preferable. The Most recent or most significant publication * Contact ideal candidate will be independent, highly motivated, information for 3 potential referees productive, and able to work effectively in a team with Charles Chen Assistant Professor Department of Bio- members from a variety of diverse backgrounds with chemistry and Molecular Biology Oklahoma State Uni- outstanding written and verbal communication skills. versity 246 Noble Research Center Stillwater, OK 74074 The successful applicant must be interested in inter- disciplinary science and field research and have a solid [email protected] publication record that illustrates ability to conduct novel, independent research. Preferred Qualifications Candidates should have 3+ years of experience in molec- OmahaZoo ular biology, genetics, or bioinformatics. The position requires proficiency in programming (Perl, C++) and MadagascarBiodiversityGenomics Linux operating systems. Applicants are also expected to be familiar with bioinformatics tools and genomics databases and have extensive and creditable laboratory Postdoctoral Fellow - Madagascar Biodiversity Ge- experience with constructing genomic libraries. nomics Must be legally entitled to work in the USA. Visa spon- Applications are invited for a Postdoctoral Fellow - sorship is not available. Madagascar Biodiversity Genomics within the Conser- vation Genetics Department at Omaha’s Henry Doorly Appointment: The selected candidate will be based Zoo & Aquarium (http://www.omahazoo.com/careers/). primarily at OHDZA-CG, but the individual will be re- Based in Omaha, Nebraska, the post doctoral researcher quired to travel and conduct field work with the projects must have an interest and expertise in the generation and under the management of the Madagascar Biodiversity analysis of next-generation sequencing data of lemurs, Partnership, ONG (www.madagascarpartnership.org). tortoises, and other taxa from Madagascar. The initial appointment is for duration of two-years, but may be renewable for an additional two years based on Duties: The successful applicant will construct genomic performance. library for high throughput sequencing as well as as- semble and analyze sequence data and manage next- Application: Applicants should send curriculum vitae, generation sequence workflows. This individual will a statement of research interests and career goals, and be responsible for development, implementation, and the names and addresses of three academic references support of software applications related to variant de- to: tection and interpretation from high-throughput experi- Dr. Edward E. Louis Director of Conservation Genetics ments involving multiple species of lemurs, tortoises, and Center for Conservation and Research Omahas Henry taxa from Madagascar. Interested candidates should Doorly Zoo and Aquarium 3701 South 10th Street, Om- be highly motivated, organized, independent, and have aha, NE 68107 Email: [email protected] extensive experience with molecular genomics and bioin- Candidates must also submit a copy of your application formatics. Travel to Madagascar to support the field materials through the Omahas Henry Doorly Zoo and programs of OHDZA-CG is required for a minimum of Aquarium career site at: http://www.omahazoo.com/- five week intervals twice a year. careers/ Review of applications will begin immediately Basic Qualifications: and will continue until the position is filled. Applicants should hold a PhD in bioinformatics, com- Genetics Department
certification is required. The successful candidate will be proficient in using molecular tools such as gene ex- pression analysis, RADtag sequencing and bacterial 16s tag sequencing as well as analysis of next generation Oslo FungalMolecularEvol sequencing data. An advanced degree in marine biology or molecular ecology or related fields is needed. This position will be filled at the research assistant or re- search associate level, depending upon education and Three year position as Postdoctoral Research Fellow in experience. Candidate must be able to begin work on fungal molecular ecology available at the University of 1 June 2015. Position initially funded for 6 months Oslo, Norway: with possibility of continuation. Applications must be submitted electronically at https://psu.jobs/job/56345 Soil fungi play important functional roles in forest ecosys- and include a cover letter detailing research interests tems; while saprotrophic taxa are essential for organic and experience, a current CV and names and contact matter decomposition; mycorrhizal root-associated fungi information for three references. Review of applications mediate the link between living plants and the below- will begin immediately and continue until position is ground community. Recent studies indicate that plant- filled. fungi interactions through mycorrhiza affect the effi- ciency of decomposition by fungi, and works as a main CAMPUS SECURITY CRIME STATISTICS: For more driver for soil carbon sequestration in forest ecosystems. about safety at Penn State, and to review the Annual The goal of this project (MycoSoil), which is funded Security Report which contains information about crime by the Norwegian Research Council, is to make funda- statistics and other safety and security matters, please mental progress in the understanding of the community go to http://www.police.psu.edu/clery/ , which will also ecology and functions of fungi in boreal forest soils, provide you with detail on how to request a hard copy how they are organized spatiotemporally and how they of the Annual Security Report. influence on carbon sequestration processes. We will Penn State is an equal opportunity, affirmative action take advantage of linking the project to two long-term employer, and is committed to providing employment surveys of boreal forests. State-of-the-art DNA metabar- opportunities to minorities, women, veterans, disabled coding and metatranscriptomics approaches will be used individuals, and other protected groups. to analyze spatiotemporal variation in the soil fungal communit ies. Job URL: https://psu.jobs/job/56345 [email protected] For more information see http://uio.easycruit.com/- vacancy/1352849/96323?iso=no or contact H˚avard Kauserud at [email protected] [email protected] PurdueU SalmonidEvolution
A postdoctoral position is available in the labora- PennsylvaniaStateU CoralEvolution tory of Mark Christie at Purdue University (https:/- /markrchristie.wordpress.com/) to examine the rapid evolution of steelhead trout (*Oncorhynchus mykiss*) to the Great Lakes. Steelhead were introduced to the Great The Baums lab in the Department of Biology at Penn Lakes around 1890 and have self-sustaining populations State (http://bio.psu.edu/directory/ibb3) is looking for where the fish continue to swim up rivers to spawn, but an experienced researcher to conduct NSF-funded ex- now forage and grow in the Great Lakes rather than periments on acclimatization of shallow-water corals to the ocean environment. Whole genome resequencing increased temperature as a result of the 2014 bleaching will play a central role in this project, thus the ideal event in the Florida Keys. Responsibilities include or- candidate will have a strong background in relevant ganizing and conducting a microcosm experiment over laboratory work and bioinformatics. Proficiency with three months in the Florida Keys (July - Sep 2015) Unix/Linux (bash shell) command line and one or more with little supervision, requiring the researcher to live scripting languages (Perl/Python etc.) will be highly in the Florida Keys during this time. Experience with regarded. Familiarity with R and analytical methods in aquarium experiments on corals and AAUS SCUBA population genetics will also be viewed favorably. The April 1, 2015 EvolDir 87 candidate is expected to be highly motivated and able (in the Science and Engineering Faculty). to work both collaboratively and independently. The The Fellow will lead the development of novel methods position is to be filled as soon as possible with August for integrating molecular and fossil data to answer major being the latest possible start date. questions in mammalian evolution. Such as the timing Applicants must have a PhD. Exceptional candidates of major diversifications and the roles of competition that will complete their PhD within the next few months and environmental change in mammalian diversification will also be considered. Applicants should submit 1. a and extinction. In turn, the Fellow will co-supervise cover letter that describes your research interests and PhD projects that seek to uncover mechanisms that goals, 2. a full CV (including publications), and 3. the underpin biodiversity variation across marsupial and names and contact information for three individuals placental mammal faunas. The position will also sup- that are willing to serve as references. Please sub- port the group’s broader research interests in vertebrate mit all application materials as a single PDF file to evolution and offers opportunities to collaborate inter- [email protected]. Funding is available for two nationally. A full duty statement is provided at: http:/- years contingent upon a successful one-year review. Re- /www.mphillipsbiol.com/contacts– vacancies.html view of applications will begin April 1st and continue The position is at QUT’s Gardens Point Campus, which until the position is filled. is located in the centre of Brisbane, nestled between the Purdue has substantial bioinformatics resources and Brisbane River and the Botanic Gardens. state-of-the-art computational facilities ideal for working The successful applicant will have excellent bioinfor- with high-throughput sequencing data. West Lafayette matic or phylogenetic skills. Molecular lab skills will is a typical college town located about 1 hour away from be highly regarded, although are less important if the Indianapolis and two hours from Chicago. Farmers application is otherwise strong. markets, local parks, and performing arts (https://- www.purdue.edu/convocations/) all make for enjoyable Essential selection criteria: living conditions. Purdue University is an EEO/AA 1. Completion of a PhD qualification in either evo- employer. lution, genetics, bioinformatics or an equivalent com- [email protected] bination of qualifications and experience in a similar molecular/quantitative field. 2. Demonstrated molecu- lar laboratory skills, including PCR and ideally, high- throughput sequencing. 3. A proven research track record in bioinformatics related to either genomics, phy- logenetic inference or morphometrics. 4. Well-developed QUT Brisbane Australia interpersonal skills with a demonstrated ability to work MammalEvolution DNA collaboratively as part of a team. 5. Proven ability to morphologyFossils work effectively with minimal supervision to initiate, execute and report research within prescribed timelines. 6. Well-developed written and oral communication skills with a demonstrated track record in publishing in high POSTDOCTORAL RESEARCH FELLOW: Mammal quality journals and presenting at conferences. 7. Abil- Evolution, DNA, morphology, and fossils ity to actively participate in and contribute to estab- The vertebrate evolution group at Queensland Uni- lishing and maintaining an effective safe and healthy versity of Technology (Brisbane, Australia) is seeking workplace. a Postdoctoral Fellow to conduct research into mam- Desirable selection criteria: malian evolution at the interface of evolutionary in- 1. Demonstrated experience with coding languages, ide- ference, genomics and palaeontology. The position is ally related to developing bioinformatic or evolutionary funded through an Australian Research Council Discov- inference tools. 2. Publication record in vertebrate ery Grant to Matt Phillips and Peter Prentis. (especially mammal) evolution, ecology, morphology or * Full-time, 2 years with extension possible. * Starting palaeontology. May-July 2015 and open to Australian and International To apply, follow the link from: applicants. * Annual salary AUD $60,670 to $82,324 plus 17% superannuation. * Applications close 29 March http://www.mphillipsbiol.com/contacts–vacancies.html You will need to supply your CV, referee details, and The vertebrte evolution group at QUT is within the an address to the selection criteria. School of Earth, Environmental and Biological Sciences 88 EvolDir April 1, 2015
Informal enquiries to Matt Phillips - (Desirable:) Project management experience. [email protected] +61 7 3138 4805 http://- If this describes you and your intentions then please send www.mphillipsbiol.com/ For human resources details your application until March 30 to [email protected] associated with application, contact Anya Levina (HR rostock.de in a single PDF document, consisting of: Advisor) [email protected] +61 7 3138 4134 - CV. Matthew Phillips
For scientific enquiries please contact Prof. Dr. Imke well in a group. Applicants that hold a driving license Schmitt, [email protected]. will be evaluated favourably. Am Forschungsinstitut Senckenberg (FIS) ist in der Starting date: By agreement during late spring/early Abteilung Limnologie und Naturschutzforschung ab dem summer 2015, preferably in May or as soon as possible. 01 Please send your cv, a motivation for why you are well Imke Schmitt
SLU Sweden PlantPathogenEvolution
SwanseaU SalmonEpigenetics One year postdoc stipend on Solanum - Phytophthora interaction We are seeking a postdoc for one year that will be based Post-doctoral position in epigenetic management of at the Department of Plant Protection Biology, unit stress and disease resistance in Atlantic salmon @ of Resistance Biology at Swedish University of Agricul- Swansea University tural Sciences (SLU) in Alnarp, Sweden (hosted by Asa˜ Institutions: Swansea University, Cardiff University, Lankinen, Laura Grenville-Briggs and Erik Andreasson). University of Aberdeen, University of East Anglia The postdoc will work on plant pathogen interactions between wild and cultivated Solanum and the oomycete Collaborators: Landcatch, Marine Harvest Phytophthora infestans. To meet global food demands, aquaculture is expected Late blight in potato, caused by infection with the to intensify fish production, but stress during intensifi- oomycete Phytophthora infestans, leads to large eco- cation can also compromise animal health, particularly nomic losses. Introduction of new resistant potato vari- during early life when the teleost immune system is eties is countered by rapid evolution of new pathogenic- being formed. Many farmed fish are already highly in- ity factors in P. infestans. However, increased insights bred and further intensification will likely make them into plant-pathogen interactions in natural systems can more susceptible to infectious diseases and pathogens aid the development of sustainable crop management more detrimental. Stress during intensification could practices. The postdoc will work within a project that change the expression of genes via epigenetic program- studies interactions between P. infestans and its hosts - ming, but knowledge of fish epigenomes is very limited. potato and three wild Solanum species found in Sweden We are looking for 1 Postdoctoral Research Fellow to - and combines ecology and evolutionary biology with work on an exciting project that will use a multidisci- genetics and molecular mechanisms to answer questions plinary, cutting-edge approach to investigate how stress related to pathogen virulence and plant defence to late experienced during early life can change the epigenome blight disease. The work will involve both screening and subsequently affect the ability of fish to respond to of resistance and tolerance to P. infestans in the lab pathogens. and field work to explore potential overwintering of P. The project will involve a BACI design to manipulate infestans in wild Solanum populations. stress in Atlantic salmon during embryogenesis and as- Requirements: A PhD degree in biology or biology- sess its effects on subsequent gut health and fitness by related fields, not older than 3 years (as the main aim carrying out a gut bacterial community profiling using is training of the candidate, and living costs will be metagenomics. As a fitness indicator it will also ex- covered by a stipend, 20,000 SEK, approx. 2,200 euro, amine fluctuating asymmetry and challenge fry with per month). Candidates should be fluent in spoken Saprolegnia parasitica, a pervasive fish pathogen, and and written English. Previous experiences from work monitor fry survival in relation to expression of immune- on plant-pathogen interactions in the lab or field, ecol- related genes through RNAseq, and patterns of DNA ogy and evolutionary biology are merits. The candidate methylation. Following fish from fertilization to first must also be capable of independent planning, execution feeding, will allow for the first time to relate the effects and evaluation of experiments, and be able to function of early stress to (1) health, (2) an indicator of fitness April 1, 2015 EvolDir 91 and (3) resistance to parasites, and examine these in proaches (whole genome, exome, RNA-seq, methylation relation to variation in the genome and the epigenome. and CHiP-seq data) for genomic epidemiology studies A Research Fellow position is available at Swansea Uni- of large population cohorts. Our lab is directing the lon- versity for 22 months starting June 2015, starting salary gitudinal collection of genomic material for the CARTa- approx. £31,000. Travelling to partner Universities GENE population program (www.cartagene.qc.ca), in- (Cardiff and Aberdeen mainly) will be required to com- vestigating the genetics of endophenotypes from among plete parts of the work. over 40,000 French-Canadian participants, and the Cana- dian Partnership for Tomorrow Project, which has en- Applicants are expected to match the following criteria: listed 300,000 participants across Canada. 3) Devel- - Have a PhD in a relevant field (e.g. Biology, Ecology, oping methods for large scale cohort data integration Genetics). - Have published, confirmed accepted or in of phenotypes and genotypes through a new Genome press, at least 3-4 papers in ISI accredited peer-reviewed Canada Innovation Centre for bioinformatics and ge- journals by the starting date of the position. (Appli- nomics. 4) Identify genetic and molecular control points cants with longer periods of postdoctoral experience will associated with simple and complex disorders oncologi- be expected to have proportionally higher numbers). cal/hematological phenotypes or diseases including im- Desirable criteria are: experience working on fish, ge- munodeficiencies, child-hood cancer, and sickle cell ane- netics/genomics background, experience programming mia. in R/Python. Our lab also works in close collaboration with a number Informal enquiries can be directed to: Carlos Garc´ıa of research laboratories throughout Montreal, and inter- de Leaniz ([email protected]) or Sonia nationally, including new programs in cancer with the Consuegra ([email protected]) Ontario Institute of Cancer Research (U. of Toronto), projects on neurological disorders with the Montreal “CONSUEGRA S.”
UBath EvolutionaryGenomics UCDavis DevelopmentalEvolution- SocialMicrobes aryGenomics
We are excited to be recruiting a Postdoctoral Research A postdoctoral position is available at the University of Associate (PDRA) to work on a project focused on un- California - Davis to study the molecular mechanisms, derstanding the evolutionary processes shaping natural phylogenetic patterns, and functional consequences of variation in a social amoeba. The project combines transcriptome evolution in Drosophila.Aˆ The project is large scale genome sequencing with high throughput based on the integration of RNA-seq, ChIP-seq, trans- phenotyping to dissect the molecular basis of natural genic manipulation of gene expression and DNA-protein variation in social and non-social traits, with a goal of binding, and quantitative phylogenetic analysis to un- identifying the patterns of selection shaping underlying derstand the roles of gene cooption, gene duplication, sequence variation. The PDRA will contribute primarily and de novo gene origin in the evolution of tissue-specific to genome reconstruction, association analyses (includ- regulatory circuits. AThisˆ work involves a collaboration ing both GWAS and candidate gene based approaches) between the labs of Artyom Kopp (developmental ge- and application of molecular evolution models to se- netics and evo-devo), David Begun (evolutionary and quence data, but will also contribute to the generation population genomics), and Brian Moore (phylogenetic of data in the initial phase of the project. The project and comparative analysis).Aˆ Additional aspects of this also offers the successful candidate flexibility to pursue project may range from cell type specification to the other questions using the data, including those related evolution of enhancer sequences. APostdocsˆ will be to social evolution, the genotype-phenotype relationship, encouraged to develop independent research reflecting biogeography, and speciation. their own interests, within the broad field of develop- The successful candidate will have a background in evolu- mental and evolutionary genomics. tionary or statistical genetics (including bioinformatics). Candidates should have demonstrated expertise in ex- Skills related to the handling of large scale sequence data perimental molecular genetics and genomics, with an are essential as is the ability to work both independently emphasis on RNA-seq and ChIP-seq analysis, genome and collaboratively as part of a research team. Can- annotation, and comparative genomics.Aˆ Some expe- didates should have a demonstrated ability to publish rience in developmental biology and transgenic meth- high impact science as well as good interpersonal and ods is also desirable.Aˆ Initial appointment is for one communication skills. Some skills in molecular quanti- year, extendable by mutual agreement. AOurˆ labs and tative genetics and the analysis of molecular evolution the entire department provide a very supportive atmo- are preferred but not required. sphere.Aˆ The broader research environment at UC - The successful candidate will be based in Prof Jason Davis offers postdoctoral fellows chances for collabo- Wolf’s Lab at the University of Bath, working in close ration with leading experts in fields ranging from cell and developmental biology to evolutionary genomics collaboration with Prof Laurence Hurst. The candidate ˆ will also work with collaborators at the University of and phylogenetics. ANorthern California, where Davis is located, provides outstanding recreational opportu- Manchester and the Federal University of S˜aoCarlos ˆ (Brazil). nities.A Interested applicants should contact Artyom Kopp ([email protected]) with a CV, a brief statement The position is fixed-term of 36 months at pounds 31,342 of research interests and experience, and the names of and is set to start in May 2015, with later start dates three references. subject to approval by the funding agency. [email protected] Informal enquiries may be directed to Prof Jason Wolf via email: [email protected] (telephone or Skype con- sultations can be arranged) For further information and to apply please see www.bath.ac.uk/jobs/Vacancy.aspx?ref=SS3006 Jason Wolf
UChicago EvolutionaryGenomics UCollege London TetrapodEvolution
Background: A March of Dimes/Burroughs Wellcome Morphological evolution and modularity of tetrapods Trust funded post-doctoral position is available in the The Goswami Lab in the Department of Genetics, Evo- Lynch Lab, in the Department of Human Genetics at lution & Environment at University College London is The University of Chicago, for a highly motivated sci- now accepting applications for a postdoctoral research entist to study the mechanisms that underlie the evo- position in evolutionary morphology and diversification lutionary origin of progesterone responsiveness and de- of tetrapods. The successful applicant will be employed cidualization in endometrial stromal cells. The project for three years to work as part of a team on a European will use comparative transcriptomics to identify genes Research Council-funded project conducting a large- that evolved endometrial expression during the origins scale quantitative analysis of evolutionary rates, mor- of pregnancy, and siRNA-screens to characterize the phological disparity, and phenotypic integration across functions of recruited genes. The project is expected tetrapods. The postdoctoral researcher will focus on a to contribute to a basic understanding of the mecha- subclade of sauropsids (’reptiles’) and will be responsi- nisms that underlie decidualization and the evolution ble for building a comprehensive dataset of 3-D images of pregnancy. spanning their living and extinct diversity and extract- Skills: Candidate must have a Ph.D. in molecular or ing surface morphometric data from images. With these cell biology, genetics, or a related discipline, be self- data, they will conduct extensive analyses to reconstruct motivated, have excellent communication and organiza- the patterns and processes underlying ecomorphological tional skills. A strong background with basic methods evolution and identify the major intrinsic and extrin- in molecular biology (for example: PCR, cloning, se- sic factors shaping clade diversity. Further duties will quencing, Western blotting, protein-protein interaction involve supervision of short-term undergraduate and assays such as co-IP) and demonstrated expertise in cell Master’s student projects, assistance in field expedi- culture and gene expression manipulation (for example: tions, and uploading new data to online resources for siRNA mediated gene knockdown and overexpression) free dissemination. are required. Previous experience or strong interests in The postdoctoral researcher may take up their position gene expression analyses, bioinformatics, and genome from June 2015, although there is flexibility in start editing are desirable. time. Applications for this position will be accepted via Application information: To apply, please email a cover the UCL online application system until April 7, 2015. letter describing previous research experience, current Informal enquiries and requests for further details can research interests, and career goals, a current CV, and be directed to Anjali Goswami ([email protected]). the names and contact information for three profes- Project Backgound: sional references to Dr. Vincent Lynch at lynchlabposi- Morphological variation is the foundation of evolution- [email protected]. ary theory, but the basic influences on morphological Consideration of applications will begin immediately variation are still poorly understood. Developmental and continue until the position is filled. interactions are often discussed as a major control on Lab website: http://lynchlab.uchicago.edu Location: variation, but direct analysis of this hypothesis has been Chicago, IL USA hindered by the lack of quantitative comparative data. Similarly, robust analyses analysing both extrinsic and “Vincent J. Lynch, Ph.D.”
Further particulars and an application form are available as an alternative to chemical pesticides to prevent the at: www.uea.ac.uk/hr/vacancies/ or Tel. +44 (0)1603 movement of insect pests in fresh fruits and vegetables. 593493. This work is a recent area of inquiry in our lab that “Tracey Chapman (BIO)” has implications for both our basic understanding of
A Postdoctoral and Ph.D. positions in Computational Prof. Sagi Snir, Department of Evolutionary and Envi- Genomics and Phylogenetics are available at the In- ronmental Biology and The Institute of Evolution, Uni- stitute of Evolution at the University of Haifa. The versity of Haifa Mount Carmel, Haifa 31905 ISRAEL research projects will be done in collaboration with the Tel: (972) 4 828-8774 Email: [email protected] Phylogenetics and Computational Genomics lab of Prof. [email protected] Sagi Snir. The positions are targeted to two projects: 1. Tree reconstruction in light of conflicting signals. Real life data provide high degree of incongruent data that needs to be reconciled into a single tree. This is normally done by means of supertree methods. We have devel- UJyvaskyla HumanSocialBehavior oped several approaches to this that rely on non trivial algorithmic and computational/mathematical tools. We decompose the inputs into the most basic informational unit and summarise them across all the data. This data PostDoc: Human Social Behavior University of aggregation provides us with information that is invisi- Jyv¨askyl¨a,Finland ble at the single tree level or at the level of the entire JOB DESCRIPTION: The postdoctoral researcher will data collection. Using this novel techniques we are able work in the project “Evolution of Conflict and Coopera- to distinguish between e.g. toxic and non-toxic genes. tion in Human Groups”, funded by the Academy of Fin- We investigate both theoretical and practical questions land and led by Dr. Mikael Puurtinen. In this project, associated with these approaches. we study factors influencing levels of cooperation and 2. Detection and analysis of horizontal gene transfer competition in human groups, and are especially inter- (HGT) in prokaryotes. HGT is a major factor in prokary- ested in the interplay of within-group cooperation and otic evolution and plays a significant role in developing between-group competition. The main focus of the post- antibiotic resistance. Current methods rely on a very doctoral researcher will be on the design and execution of strong and clear HGT signal that is frequently absent, decision-making experiments to investigate e.g. the role e.g. HGT between strains of a species. We have de- communication, social sanctions, and group identifiers veloped several novel methods to detect HGT where have in mediating the nature of within- and between- existing methods fail. The methods use evolutionary group interactions. However, there is considerable scope signals, unique to HGT, that are detected by rigorous for the postdoctoral researcher to develop his/her own statistical approaches. research ideas. The project involves development of theory to complement the empirical studies, and the- The successful candidates must have familiarity with computational/mathematical biology. Essential require- oretically oriented researchers are also encouraged to ments include proficiency in computer-programming apply. skills, such as C/C++/Java and scripting languages For published work on the topic by the research 98 EvolDir April 1, 2015 group see: Between-group competition and human vironmental Science Centre of Excellence in Biological cooperation < http://rspb.royalsocietypublishing.org/- Interactions University of Jyv¨askyl¨a,Finland tel. +358 content/276/1655/355 >. Proc R Soc B 2009. 50 3758975 Costly punishment prevails in intergroup con- “Puurtinen, Mikael”
available. Qualifications: By the start date, all elements of the PhD, including the dissertation, must be completed and the degree con- UMissouri ferred in biological, earth sciences, engineering or similar DinosaurCranialBiomechanics field, with an emphasis on vertebrate biomechanics and paleobiology.
Casey Holliday ([email protected]) and I (mid- Additional qualifications include demonstrated experi- [email protected]) have an opening for a three-year, ence in one or more of the following: 3D computational NSF-funded postdoc to study cranial biomechanics and biology, Morphometric analysis, and/or 3D anatomical evolution in dinosaurs in collaboration with Larry Wit- visualization such as experience working with CT image mer (Ohio University) and Julian Davis (University of data and with 3D model rendering software (Amira, Southern Indiana). Details and application informa- Maya), MATLAB, and R; demonstrated experience tion are below. Feel free to pass along to interested managing personnel and leading research projects; and researchers and direct any questions to Casey or me. demonstrated ability to publish in English- language peer-reviewed journals. —- Preference will be given to individuals with interests in Kevin Middleton, Ph.D. Department of Pathology & morphology-based research and whose interests comple- Anatomical Sciences University of Missouri School of ment those of current faculty in the Integrative Anatomy Medicine http://web.missouri.edu/˜middletonk—- group (http://anatomy.missouri.edu) will be given prior- Position Details: ity. The Integrative Anatomy Group provides a collegial environment with substantial opportunities for intellec- Project title: Evolution of Dinosaur Jaw Musculature tual creativity and diverse research. and the Origins of Avian Cranial Kinesis. Postdoctoral Fellow, University of Missouri, Columbia, MO. Application Materials: The Department of Pathology and Anatomical Sciences To apply please submit (1) cover letter including con- at the University of Missouri School of Medicine invites tact information for three references; (2) curriculum applications for a postdoctoral research associate. The vitae; and (3) a research statement including previous position is for one year and is renewable up to 3 years. experience and future plans The successful applicant will work under the supervision University of Missouri web site is hrs.missouri.edu/find- of Drs. Casey M. Holliday and Kevin M. Middleton on a-job/academic/. At the top of the webpage, select a National Science Foundation-funded program in 3D prospective employees and search for pathology to reach Cranial Biomechanics and Morphometrics. The posi- the link for the position. The Job ID number is 15786. tion is 80% Research and 20% Outreach (allocation is negotiable) and offers a competitive salary plus benefits. [email protected] Review of applications will begin March 1, 2015 and remain open until filled with an anticipated start date of August 1, 2015. Responsibilities: UMontana EvolutionaryGenomics 1) The candidate will work directly with PIs Holliday, SexualSelection Middleton, Davis, and Witmer to develop and conduct analyses of cranial biomechanics and morphometrics of fossil and extant dinosaur species. 2) The candidate will help develop 3D anatomical and Postdoc:EvolutionaryGenomicsSexualSelection University of Montana biomechanical visualizations and mobilize these data to Post-doctoral RESEARCH FELLOW: EvolutionaryGe- appropriate online databases and outreach locations. nomicsSexualSelection The University of Montana, to study the genetic basis for rapid weapon evolution in 3) The candidate will present findings in collaboration rhinoceros beetles with project leaders and associated students. The can- didate will develop and participate in the Inside Di- Application deadline: 31 March 2015 Start date: be- nosaurs education and outreach program at University tween May and June 2015 of Missouri. Funds for research expenses and travel are Doug Emlen at the University of Montana, Missoula, April 1, 2015 EvolDir 101 in collaboration with Laura Corley Lavine, Washing- Doug Emlen
*Contacts:* calyptus species. This widespread genus of Australian trees includes several hybridising species that co-occur Prof. Karine Van Doninck, [email protected] in woodlands across large portions of Eastern Australia, offering an unusual degree of replication for studying University of Namur, Laboartory of Evolutionary Ge- comparative landscape genomics and the role of inter- netics and Ecology specific gene flow in local adaptation. A second aim http://www.lege-unamur.be *Application://* of the project is landscape genomic association stud- ies on thousands of trees to identify environmentally Applicants should have a PhD in a relevant area. Pri- adaptive loci. A third aim will be to validate adaptive ority will be given to candidates with a proven track loci segregating in hybrid progeny by growing seedlings record (with several publications as a first author) who in climate chambers phenotyping stress response with will express their motivation to the project. plant phenomics. The position is for 3 years starting latest on the *1^st of To be considered for this position applicants must have July 2015. *The closing date for applications is *5^th a PhD in Evolutionary Genetics, Genomics or a related of May, 2015. *Interested applicants should send a area, with an excellent research record relative to oppor- cover letter (briefly describing research experience, in- tunity, including articles in high quality, peer-reviewed terests, and career goal), curriculum vitae (with list of journals. In addition the successful applicant will have publications), and the names of three references (includ- research experience in population genomics, admixture ing address, phone number and Email) to Karine VAN analysis and/or landscape genomics. DONINCK ([email protected])** This is a full-time fixed-term position available for 2 – years, with the possibility of further appointment, sub- Karine VAN DONINCK Full Professor Department of ject to the availability of funding. The successful can- Biology didate will be expected to participate actively in the School and to interact with undergraduate and postgrad- T. +32 (0)81 724 407 F. +32 (0)81 724 uate students in the research group. The research fellow 362 [email protected] http://- will join Dr Rose Andrew’s research group at UNE, perso.fundp.ac.be/ ˜ kvandoni/ Universit´ede Namur which conducts genome-enabled research on adaptation ASBL Rue de Bruxelles 61 - 5000 Namur Belgique and speciation in a range of organisms (e.g. orchids, Let’s respect the environment together. Only print this sunflowers, feral cats). This project is a collaboration message if necessary! with Professor Justin Borevitz at the Australian Na- Karine Van Doninck
BioBE Posting 15074 To ensure consideration, please submit applications by April 2, 2015. This position will remain open until filled. The University of Oregon is an equal opportunity, af- UOregon MicrobialEcology firmative action institution committed to cultural di- Bioinformatics versity and compliance with the ADA. The University encourages all qualified individuals to apply, and does not discriminate on the basis of any protected status, Postdoctoral Research Scholar in Bioinformat- including veteran and disability status. ics/Microbial Ecology Institute of Ecology and – INSTITUTE OF ECOLOGY AND EVOLUTION 5289 Evolution Posting: 15074 University of Oregon, Eugene OR 97403-5289 F (541) Jessica Green (http://biology.uoregon.edu/people/- 346-2364 http://IE2.uoregon.edu EO/AA/ADA insti- green/) is currently seeking a bioinformatics postdoc- tution committed to cultural diversity. The University toral research scholar to explore fundamental questions encourages all qualified individuals to apply, and does in microbial ecology and evolution. Applicants must not discriminate on the basis of any protected status, have a Ph.D. with extensive training using bioinfor- including veteran and disability status. matics to understand the ecology and/or evolution of [email protected] complex biological systems, and strong writing skills. The ideal candidate will have experience with statisti- cal analysis, next-gen sequence data analysis,software development, and/or experience with combining and analyzing complex datasets from multiple sources and technologies. The successful candidate will have the abil- UOregon MicrobialEcologyEvolution ity to work effectively with faculty, staff and students from a variety of diverse backgrounds. The successful candidate will have the opportunity to Postdoctoral Research Scholar - Microbial Ecology and creatively and independently engage in research at the Evolution Posting 15060 Institute of Ecology and Evo- Biology and Built Environment (BioBE) Center (http:/- lution Brendan Bohannan at the University of Oregon /biobe.uoregon.edu/), funded by the Alfred P. Sloan (http://pages.uoregon.edu/bohannanlab/) is currently Foundation. The BioBE Center is training a new gen- seeking a postdoctoral research scholar to explore fun- eration of innovators to study the built environment damental questions in microbial ecology and evolution. microbiome - the diversity of microorganisms interact- Applicants must have a Ph.D. in a biological, computa- ing with each other and with the indoor environment. tional, or mathematical field and strong writing skills. The vision of this national research center is to under- Experience developing and applying theory and and/or stand buildings as complex ecosystems and to explore modeling to microbial systems is highly desirable. how architectural design mediates urban microbial ecol- The successful candidate will support and enhance the ogy and evolution. For a description of partner projects university’s and the institute’s commitment to diversity see http://www.microbe.net/ . The position is available and be a key member of the META Center for Systems for 1 year with the possibility for renewal depending on Biology (http://meta.uoregon.edu). The Microbial Ecol- performance. The start date is flexible. Please email ogy and Theory of Animals (META) Center for Systems questions regarding the position to Jessica Green (jl- Biology is devoted to understanding how host-microbe [email protected]). systems function and how this knowledge can be used To apply to advance human health. The successful candidate will A complete application will consist of the following ma- interact closely with other META Center members, as terials in a single attachment: well as take a leadership role in the Bohannan Research Group. We are especially interested in candidates who (1) a brief cover letter explaining your background and have a strong desire to ask fundamental ecological and career interests evolutionary questions of host-associated microbial com- (2) CV (including publications), munities. Women and minorities encouraged to apply. We invite applications from qualified candidates who (3) names and contact information for three references. share our commitment to diversity. The position is Submit materials to [email protected]. Subject: available for 1 year with the possibility of renewal con- 106 EvolDir April 1, 2015 ditional on performance and funding. The start date from either parent. is flexible. Please email questions regarding the posi- The project integrates evolutionary genetic, genomic, tion to Brendan Bohannan ([email protected]). quantitative genetic and ecological approaches to inves- To apply A complete application will consist of the tigate the consequences of hybridization in the interplay following materials in a single attachment: (1) a brief with recombination and selection. Phenotypes of in- cover letter explaining your background and career in- terest include beak morphology, plumage coloration, terests (2) CV (including publications) (3) names and vocalization, migration behaviour and intrinsic repro- contact information for three references Submit mate- ductive barriers (genetic incompatibilities). Of genomic rials to [email protected]. Subject: Posting 15060 resources we have de novo assembled the house spar- To ensure consideration, please submit applications by row genome, which will be used as a reference for re- April 2, 2015. This position will remain open until sequencing and genotyping efforts in this project. We filled. Position subject to criminal background check. aim at increasing our understanding of the modularity EO/AA/Veterans/Disability institution committed to of the genome and of the processes of adaptation and cultural diversity. speciation. The successful candidate will be allowed to http://jobs.uoregon.edu/unclassified.php?id=5037– choose aspects of the larger program as best fits her/his INSTITUTE OF ECOLOGY AND EVOLUTION 5289 skills and research interests. She/he will also be encour- University of Oregon, Eugene OR 97403-5289 F (541) aged to develop additional, complementary avenues of 346-2364 http://IE2.uoregon.edu EO/AA/ADA insti- research. tution committed to cultural diversity. The University The candidate must have a PhD or other correspond- encourages all qualified individuals to apply, and does ing education in a relevant field, such as evolutionary not discriminate on the basis of any protected status, biology, genomics, genetics and/or bioinformatics. Doc- including veteran and disability status. umented skills in population genetic/genomic and/or [email protected] quantitative genetic analysis will be emphasized. The research will be conducted in close collaboration with Prof. SAtre˜ and his group at CEES. The research team will also include other scientists from Norway, Swe- den and Finland. The working language will be English. UOslo 3yr AvianHybridization Fieldwork may be conducted at a variety of locations, including Italy and other Mediterranean countries. The application must include: Application letter, CV, 3-year research position in Evolutionary Genetics at Cen- copies of educational certificates, transcript of records, tre for Ecological and Evolutionary Synthesis (CEES), A complete list of publications and up to 5 academic University of Oslo (UiO) works, Names and contact details of 2-3 references. The project is part of a larger research program entitled Apply online within 24th March via Easyre- “On the role of hybridisation in evolution-the case of cruit: http://uio.easycruit.com/vacancy/1351119/- Eurasian Passer Sparrows ” funded by the Norwegian 96871?iso=no Contact: Glenn-Peter SAtre,˜ e-mail: Research Council. [email protected] Hybridization can have different evolutionary outcomes, Anna Runemark
Eligibility: The position is open to all nationalities. to conduct research on topics studied in the group. Some 10-20 % of the time will be allocated to shared interests Salary Level and Range: Postdoctoral Fellow ($72,046), Fixed term until 2016 of the whole team. We seek a highly motivated Ph.D. with interest in the topics represented by the groups, How to Apply: Interested applicants are encouraged expertise in population genomics and bioinformatics and to make informal enquiries to Professor Neil Gemmell. international experience. The position will be based on Please send your Curriculum Vitae, a copy of your aca- the Linnanmaa campus, where all groups except for the demic transcript, a sample of your written scientific cancer biology group are based. Applications should work and the names of three referees with a covering include a letter describing your interest, your CV and letter to: list of publications, and names of three possible persons Professor Neil J. Gemmell e-mail: to ask for letters of reference. All the materials should [email protected] be submitted as one single pdf to kirjaamo@oulu.fi, by March 23rd, 2015. Applications close on the 28th March and it would be desirable if the successful applicant were able to start For the official announcement, please see by mid 2015. https://www.saimanet.com/certiahome/- open job view.html?did=5600&jc=1&id=- Professor Neil J. Gemmell Head of Department Depart- 0000863&lang=en . For information, please be ment of Anatomy University of Otago, PO Box 913 in touch with Outi.Savolainen@oulu.fi and/or the other Dunedin 9054 New Zealand PIs. Phone: +64 3 479 6824 Fax: +64 3 479 7254 Outi Savolainen
Dear EvolDir members UOulu The PPGBA - Graduate Program in Animal Biology , PopulationStatisticalGenomics Zoology Department, Universidade Federal de Pernam- buco, Northeastern Brazilian coast - will be selecting 1 PostDoc Fellow (PNPD Capes) to develop scientific and educational activities within the PPGBA . The scholar- Post doc in population and statistical genomics at the ship will be valid for 12 to 60 months . The scholarship University of Oulu amount is R$3,800.00 (around USD 1,500.00) monthly. Note that FACEPE - Foundation for Science and Tech- Post doctoral position for two years available in the nology of the State of Pernambuco - can supplement Population and statistical genomics (PSG) research the scholarship in R$ 1,200.00 (USD 600.00) . Can- team http://www.oulu.fi/popstatgen at the University didates should express their interest to participate in of Oulu, in the Genetics and Physiology unit. the selection by presenting a work plan, stating the re- The team consists of five different research groups, deal- search project and discipline plan with simplified menu ing with genomics of adaptation of plant populations to be offered in PPGBA UNTIL 03/25/2015. It is still (Outi.Savolainen at oulu.fi), with conservation genetics offered to the selected candidate the possibility of co- of especially large carnivores (Jouni.Aspi at oulu.fi), of supervision of Master’s Dissertation and/or Doctorate statistical genomics, especially variable selection meth- Thesis in the area of the Supervisor. ods (Mikko.Sillanpaa at oulu.fi), systematics and evo- Thus, the Laboratory of Evolutiona ry and Environ- lutionary genetics of Lepidoptera and of social insects mental Genomics, led by Dr. Rodrigo A. Torres (Marko.Mutanen at oulu.fi) and human cancer func- (lagea.com.br) has full interest for hosting an associate tional genomics (Gonghong.Wei at oulu.fi). researcher with remarkable scientific production. It is The post doc will be associated with one of these groups preferred but not mandatory applications for Brazilians. April 1, 2015 EvolDir 109
It is offered excellent working infrastructure in the areas pollen identity data; phylogenetically-controlled and of Conservation Genetics, Molecular Systematics, and community-level statistical analyses and preparation of Conservation of species and ecosystems through analysis manuscripts for publication. There is also the ample of genome damaging. Additionally, our team is now com- opportunity to design and implement additional polli- posed of one PostDoc, four PhD students, three MSc. nation projects of mutual interest. students, and undergraduate students. Our lab expects The postdoc position is for two years, renewable up candidates with at least 5 papers accepted/published at to two additional years. Start date is negotiable, but the qualis B1 or higher in the area of BIODIVERSITY- Summer 2015 is preferred. CAPES . For details see the WebQualis ( http://- qualis.capes.gov.br/ webqualis/publico/ pesquisaPub- TO APPLY: Please send a CV and a description of your 3 experience and interests as relevant to the position to licaClassificacao.se am?conversationPropagation 4 g in ) [email protected], along with the names and contact infor- mation for three referees. In a covering letter clearly More information by email [email protected] . highlight skills and experience related to key responsi- Sincerely yours, bilities. Informal enquiries are also welcome! Deadline Rodrigo A. Torres, D. Sc. - CNPq PQ 2 Laboratory of for application materials is April 1, 2015. Evolutionary and Environmental Genomics Department Dr. Tia-Lynn Ashman Professor Department of Biolog- of Zoology, UFPE ical Sciences University of Pittsburgh Pittsburgh, PA [email protected] 15260-3929 412-624-0984 http://www.pitt.edu/˜tia1/ [email protected]
UPittsburgh USDA ARS Gainesville Plant-PollinatorInteractions PopulationGenomics
Postdoc in Plant-Pollinator Interactions at the Univer- Two postdoctoral research positions in population ge- sity of Pittsburgh nomics are available in the laboratory of DeWayne A Postdoctoral fellow position exploring plant-pollinator Shoemaker, Agricultural Research Service, Gainesville, interactions in diverse flowering plant communities is Florida. available in the laboratory of Tia-Lynn Ashman, De- Our current research program largely focuses on func- partment of Biological Sciences at the University of tional, population and evolutionary genomics studies Pittsburgh. Field work will be conducted in the Serpen- of fire ants (genus Solenopsis). Examples of current tine seeps of Napa County, California. projects include the use of population genetic and ge- Using replicated California wildflower communities, the nomic tools and approaches to understand the genetic work will link plant traits with the pattern and costs of underpinnings of fire ant social behavior, the patterns of heterospecific pollen transfer, and characterize the mod- genome-wide gene flow and introgression among fire ant ifiers of both pre- and post-pollination interactions at a species, the genetic architecture of species differences, community-wide scale. The work will specifically test the consequences of recent invasions of fire ants into new the idea that within a co-flowering community tolerance environments and reproductive biology and life history and avoidance of heterospecific pollen receipt are alter- of fire ants and other ants. nate strategies for coexistence, and that tolerance is a We are looking for someone to join us on a project stabilizing force that depresses the risks of reproductive that uses NGS methods (particularly genotyping-by- failure of rare or facilitated species (e.g., Ashman and sequencing) to investigate population structure, gene Arceo-Gomez 2013 AJB 100:1061-1070; Arceo-Gomez flow, introgression, and species delimitation in fire ants. and Ashman 2011 New Phytologist 192: 738-746). Successful candidates will be encouraged to work on Responsibilities include characterizing plant-pollinator additional projects, depending on personal interests interactions in the field; greenhouse experiments to and demonstrated abilities. The lab is located within assess fitness costs of plant-plant interactions on the the Fire Ant Research Unit at the Center for Medical, style, collection of reproductive trait, pollinator, and Agricultural and Veterinary Entomology in Gainesville, 110 EvolDir April 1, 2015
Florida and maintains close interactions with labs that * What we offer A three-year contract is offered, which work on insect genetics at the University of Florida. Ini- might be renewed for two extra years. The successful tial appointments are for one year with the possibility of candidate will have the opportunity to conduct fieldwork extension based on performance and available funding. in Africa, Asia and Oceania. The postdoc will integrate Desired qualifications: Ph.D. in genetics, evolutionary in a dynamic team composed of multiple postdocs and genomics or related field, interest and expertise in popu- PhD students, and will collaborate with groups studying lation and evolutionary genomics, bioinformatics experi- evolution, genomics, ecology and physiology. ence of managing and analyzing large-scale genomic data Preferred start date: 1st May 2015. The position sets, programming experience in any scripting language will remain open until a suitable candidate is found. (e.g. PERL or Python), and evidence of excellence in For inquiries, contact Pascal-Antoine Christin by email research and high productivity. (p.christin@sheffield.ac.uk) and include a CV and brief To apply, please send a brief description of research (1-page) statement of research interests. interests (1-2 pages), a CV, and contact information for Further reading: Christin PA, et al. 2012. Adaptive three references to [email protected]. evolution of C4 photosynthesis through recurrent lateral Start date is flexible and can be immediate. Positions gene transfer. Current Biology 22: 445-449. Soria- are open until filled. Carrasco V, et al. 2014. Stick insect genomes reveal “Shoemaker, Dewayne”
USheffield PlantPopGenomics
UToledo FishGenomics A three-year postdoc funded by the ERC is avail- able at the University of Sheffield (United King- dom), in the department of Animal and Plant Sciences. The postdoc will work with Pascal- Position or Title: Postdoctoral Researcher in Fish Ge- Antoine Christin (http://www.shef.ac.uk/aps/staff-and- nomics and Genetics students/acadstaff/christin), in collaboration with Pa- trik Nosil (http://nosil-lab.group.shef.ac.uk/) and Colin Agency/State: University of Toledo, Ohio Osborne (http://osbornelab.group.shef.ac.uk/people/- Responsibilities: The research entails helping to develop, colin-osborne/). test, and publish a Next-generation sequence assay for * The project The goal of this project is to understand detecting and identifying all Great Lakes native and in- the history of mutations and subsequent gene flow under vasive fish species, including those anticipated to invade, selection that led to the gradual emergence of novel phys- from environmental DNA and plankton samples. The iological pathways, using C4 photosynthesis as a study postdoc will organize large DNA sequence databases, train and co-supervise students and technicians, and system. Genome-wide data will be generated for grasses publish results in high-impact journals. of the genus Alloteropsis collected throughout Africa and Asia and analysed in an ecological context coupled Qualifications: Ph.D. degree required in hand. Pub- with phenotyping (conducted in parallel by other group lication of Ph.D. results in peer-reviewed journals re- members). quired. Excellent recommendation from former advisors required. Teaching and supervisory experience preferred. * What we require The postdoc will be responsible for col- lecting the samples in the field, generating the genome- Data management experience, bioinformatics, and data wide data, and leading hypothesis-driven analyses in analysis experience in molecular phylogenetics and pop- an evolutionary context. He will perform innovative ulation genetics required. DNA extraction, PCR, DNA data analyses and disseminate the results of the project. Sequencing (Sanger and Illumina MiSeq), alignment, and GenBank experience required. Familiarity with Applications are invited from candidates with interests QIMME, Unix/Linux operating systems and writing in populations genomics as a tool to address important questions in evolutionary biology. A PhD is required, as Perl is a plus. Strong communication (written, oral) well as a demonstrated expertise in population genomics, skills required. or bioinformatics. Field work experience is preferred. Salary: Competitive salary, full benefits. April 1, 2015 EvolDir 111
Ad Closing Date: April 15, 2015 or until filled and genomic data (e.g., whole-genome resequencing, GBS/RAD genotyping, QTL mapping) and/or exper- Contact/Email: [email protected] imental developmental biology (e.g., manipulation of How to Apply gene expression, transgenesis, genome editing) 2. An Send (1) cover letter, (2) CV, (3) 2 letters of ref- ability and willingness to work both independently and erence, (4) unofficial copies of graduate and under- collaboratively 3. A strong track record of high-quality graduate transcripts via .pdf to Dr. Stepien at research and publication [email protected]. To apply, please submit the following materials: 1. The University of Toledo is an Equal Access, Equal Cover letter that describes your research interests and Opportunity, Affirmative Action Employer and Educa- goals 2. CV, including a list of publications 3. Names tor and is committed to increasing the diversity of our of three referees who will be willing to submit letters of campus. reference upon request Weblink: http://www.utoledo.edu/nsm/lec/research/- Please email application materials in a single PDF file glgl/index.html Carol A. Stepien, Ph.D. Distinguished to Mike Shapiro: [email protected]. University Professor of Ecology & Director of the Mike Shapiro Associate Professor Department of Bi- Lake Erie Center University of Toledo 6200 Bayshore ology University of Utah 257 S 1400 E, Room 201 Rd. Oregon OH 43616 [email protected] 419- Salt Lake City, UT 84112 (801) 581-5690, fax (801) 530-8362 http://www.utoledo.edu/nsm/lec/ “Stepien, 581-4668 http://www.biology.utah.edu/shapiro/ Pi- Carol”
UUtah Evolutionary GeneticsGenomics Development UUtah HerbivoreMicrobiomeBiodiversity
Applications are invited for grant-funded postdoctoral positions in the laboratory of Mike Shapiro in the Department of Biology, University of Utah (http://- *Biodiversity and Metagenomics of the Herbivore Mi- www.biology.utah.edu/shapiro). crobiome* We seek highly motivated and creative colleagues to The Dearing lab at the University of Utah invites ap- study the genetic and developmental basis of phenotypic plications for a postdoctoral fellow to participate in a variation in the rock pigeon (epidermal, skeletal, and collaborative study to understand the gut microbiome muscle identity and patterning). Specific projects will of mammalian herbivores with respect to detoxification be tailored to the strengths and interests of successful of plant defensive compounds. Our investigations sug- candidates. gest 1) the microbiome in the foregut of woodrats is critical for the ingestion of dietary toxins, 2) microbial Recent publications from our lab on this topic include: biodiversity is important in this process and 3) previous E.T. Domyan, et al. (2014) Epistatic and combinatorial exposure to toxins shapes the microbiome. For more effects of pigmentary gene mutations in the domestic information on previous research, see: pigeon. Current Biology 24: 459-464 http://biologylabs.utah.edu/dearing/Lab/- M.D. Shapiro, et al. (2013) Genomic diversity and evo- publications.html This postdoctoral position will lution of the head crest in the rock pigeon. Science 339: focus on the influences of host evolutionary history 1063-1067. and diet in sculpting the diversity and function of the mammalian microbiome. One component of this will S.A. Stringham, et al. (2012) Divergence, convergence, be a broad survey of microbiomes and phylogeny across and the ancestry of feral populations in the domestic the woodrat genus (*Neotoma). *The ideal candidate rock pigeon. Current Biology 22: 302-308. will have a strong interest and experience in microbial Ideal candidates are recent Ph.D. awardees who demon- ecology and metagenomics, with experience in gut strate: 1. A strong background in analysis of genetic systems preferably of vertebrates. Basic bioinformatic 112 EvolDir April 1, 2015 and molecular skills are required. Fieldwork for small lepida* with assembly expected by April 1, 2015. The mammal collection will be necessary; prior experience successful applicant will use this new genomic infor- preferred but not required. The candidate should have mation to amplify and sequence CYP2B genes from a a demonstrated record of publication with at least variety of wild mammalian species, compare predicted one first authored publication in press, and will be protein sequence with respect to degree of dietary spe- expected to work well in a collaborative environment. cialization, and characterize the function of the proteins The Dearing lab provides a strong training and career purified from heterologous expression systems to de- development environment for candidates interested in termine the structural basis of functional differences. academic positions. The applicant may also conduct enzyme assays. This re- *Applications will be reviewed as they are received until search is a collaborative project with Dr. James Halpert, the position is filled*. The preferred start date is June UConn and provides possibilities for interactions with 15, 2015. Please send cover letter, C.V., statement of his research group. research experience and interests that includes career For more information on previous research, see: goals (1-2 pgs), pdfs of papers, and contact information http://biologylabs.utah.edu/dearing/- (emails, phone numbers and professional relationship) Lab/pdf/2012 journal pone.pdf http:/- for at least 3 professional references to Dr. Denise Dear- /biologylabs.utah.edu/dearing/Lab/pdf/- ing, [email protected]; please put ’Microbiome 2009 expression biotrans magnanou.pdf The ideal Postdoctoral Applicant’ in the Subject Line. candidate will have experience accessing and evaluating [email protected] genomic data, using molecular techniques, experience with biochemical analyses and have an interest in addressing questions of molecular evolution, molecular ecology or plant-animal interactions. Animal collection fieldwork is possible. The candidate should have at least one first authored publication in press. The Dearing UUtah PlantAnimalMolEvol lab provides a strong training and career development environment for candidates interested in academic positions. *Postdoctoral Fellowship: **Molecular Evolution of Applications will be reviewed as they are received. The Plant-Animal Interactions* preferred start date is July 6, 2015, with an earlier start *Plant-Animal Interactions*: The Dearing lab at the date possible. Please send a cover letter, C.V., state- University of Utah invites applications for a postdoctoral ment of research interests that includes career goals (1-2 fellow to participate in a study to understand the co- pgs), pdfs of papers, and contact information (emails evolution of mammalian herbivores and plant defensive and phone numbers) for at least 3 professional refer- compounds. This collaborative project will investigate ences to Dr. Denise Dearing, *[email protected] the role of a subfamily of detoxification enzymes with *; please put ’*Postdoctoral Applicant CYP2B*’ in the respect to dietary strategy. Few mammalian herbivores Subject Line. are capable of dietary specialization. Our preliminary [email protected] data suggest the cytochrome P450 2B subfamily is crit- ical in the biotransformation of plant secondary com- pounds, particularly terpenes. These enzymes may play a key role in dietary specialization since substrate speci- ficity and catalytic efficiency of CYP2B enzymes can be greatly affected by small changes in amino acid sequence. UVermont LoyolaU The change of even a single amino acid, particularly ChagasGenomics in critical regions such as a substrate recognition site, can have notable effects on metabolism of substrates. Thus, the structure and copy number of CYP2B genes may be key in an herbivore’s ability specialize on a Research/Teaching Post-doc in Bioinformatics with an terpene-rich diet. The future work consists of charac- emphasis on Evolutionary Genomics. The postdoctoral terizing and comparing the amino acid sequences of fellow will use bioinformatics of DNA sequence to un- CYP2B enzymes of specialist and generalist woodrats derstand the population and evolutionary relationships (*Neotoma spp.*) and possibly other terpene feeders. of Chagas disease insect vectors and/or parasites. The We are currently sequencing the genome of *Neotoma post-doc will be mentored to develop 10-15 lectures for April 1, 2015 EvolDir 113 an introductory biology major’s course and/or an area of and monkeyflowers (Mimulus), our research addresses candidate’s expertise. Ideally, the candidate will spend the following questions: How do plants cope with daily 50% time each at University of Vermont and Loyola and seasonal environmental fluctuations? How and why University New Orleans. do these responses evolve along environmental gradi- Minimum Qualifications: A Ph.D. in a relevant area ents? How are multi-trait adaptations assembled over such as bioinformatics, genomics or biology. evolutionary time? Current NSF-funded work is focused on following the history and function of sunflower domes- Preferred Qualifications: Documented theoretical and tication alleles with ancient DNA and gene expression practical experience with relevant methods in bioinfor- studies as well as the genetics of natural variation in matics as well as knowledge of evolutionary biology, solar tracking. Additional lab and field work in wild ecology and host-parasite interactions. Excellent com- sunflowers and monkeyflowers centers on the genetic munication skills, written and spoken are anticipated. changes and ecological pressures contributing to clinal The ability to work collaboratively in an interdisciplinary variation in developmental plasticity, with an emphasis research team is desirable. on responses to seasonal cues. Position is funded for two years, the preferred stat date The Research Associate will work closely with the PI, col- is May 1, 2015. laborators, and lab personnel to design and lead research Inquiries may be addressed to Lori Stevens in the lab and field. The position also involves preparing at: [email protected] or Patricia Dorn at: grant proposals and manuscripts, data management and [email protected]. Please include ’Chagas Post-doc’ in dissemination, and mentoring graduate and undergradu- the subject line. ate students. The ideal candidate will demonstrate the ability to integrate across biological disciplines, identify How to Apply: Applications will be reviewed as they and troubleshoot promising new methodologies indepen- are received. Please send a cover letter, C.V., state- dently, and use the appointment to develop and pursue ment of research interests and career goals (1-2 pgs), novel, exciting questions. Demonstrated expertise in pdfs of papers, and contact information of 3 ref- evolutionary genetics, including experience with analysis erences to Dr. Lori Stevens ([email protected] of genomic or transcriptomic datasets and programming
The University of Virginia is an Equal Opportu- also be considered. Applicants should submit: nity/Affirmative Action Employer. Women, minorities, 1. A cover letter describing research experience, interests veterans and persons with disabilities are encouraged to and goals, and their relevance to the project. apply. 2. A full CV, including publications, and Benjamin Blackman Department of Biology University of Virginia PO Box 400328 Charlottesville, VA 22904 3. The names and contact information for three individ- uals willing to serve as references. Tel: 434.924.1930 E-mail: [email protected] Web: http://people.virginia.edu/ ˜ bkb2f/Blackman Lab/ Please submit all application materials as a single PDF [email protected] file to [email protected] with “Postdoctoral application” as the subject line. Funding is available for three years contingent upon a successful one-year review. Review of applications will begin April 1st and continue until the position is filled. UWashington The postdoc will join a center of excellence in ecology, PlantFrugivoreCoevolution evolutionary and organismal biology at UW (http://- www.biology.washington.edu), s/he will have constant interaction with the rest of the project’s collaborative team (D´avalos lab at SUNY Stony Brook), and will A postdoctoral position is available at the Santana have ample opportunities for further development in and Riffell laboratories at the University of Washing- research, teaching and outreach at the Department of ton in Seattle (http://faculty.washington.edu/ssantana/- Biology and the Burke Museum of Natural History and wordpress/). The postdoc will be part of the NSF- Culture. funded collaborative project “Chance or necessity? [email protected] Adaptive vs. non adaptive evolution in plant-frugivore interactions”. The project will focus on the mutualism between bats of the genus *Carollia* and their primary food source, Neotropical *Piper*. The project will in- tegrate tools from analytical chemistry, genomics and UWisconsin Madison behavioral ecology to measure the coevolution between diversity in scent composition of *Piper* fruits and the PlantQuantGenet olfactory ability and behavioral preferences of *Carol- lia*. Fieldwork will be based at La Selva Biological Station in Costa Rica. A postdoctoral research associate position is available The postdoc will be involved in: (a) planning, conduct- in the laboratory of John Doebley at the University of ing and/or supervising chemical assays of fruit volatile Wisconsin-Madison to study the quantitative genetics organic compounds (VOCs) in the field and the lab, and genomics of teosinte, the progenitor of maize. (b) designing and conducting behavioral experiments The postdoctoral associate will work as a member of the on frugivorous bats in Costa Rica, and (c) conduct- NSF-funded Panzea project (www.panzea.org) and use ing phylogenetic and other statistical analyses on VOC population genomics to understand the genetic architec- and behavioral data. The ideal candidate will have ture of domestication traits and inbreeding depression a strong background in relevant laboratory and field in natural populations of teosinte. methods. Proficiency with R, phylogenetic compara- We bred 120 teosinte individuals (parent plants) from tive methods and multivariate statistics will be highly multiple natural populations to create a set of 10,000 regarded. Fieldwork will play a central role in this progeny of known pedigree. These progeny are being project, and familiarity with bat research tools will also phenotype for traits related to domestication and local be viewed favorably. We seek a highly motivated can- adaptation. A combination of whole genome sequences didate who is able to work both collaboratively and for the 120 parents along with GBS data for the 10,000 independently. The position will be filled as soon as progeny provides a knowledge of the whole genome se- possible, with October being the latest desired start quences of the all 10,000 progeny. These data will be date. used to address questions about quantitative genetic Applicants must have a Ph.D. Exceptional candidates parameters in teosinte, map genes for trait variation, completing their Ph.D. within the next few months will investigate inbreeding depression, and compare the con- April 1, 2015 EvolDir 115 tributions of different functional classes of genomic vari- - a full CV (including a list of publications) - a letter ants to trait variation. Potential projects are flexible detailing why they are applying for a position - two within the scope of the project. letters of reference The postdoctoral associate will work with other team to the Office for Human Resources. members on the creation and analysis of this large Send E-Mail to Human Resources dataset combining phenotypes, pedigrees, and GBS
< http://www.vetmeduni.ac.at/en/research/young- For this position we request: scientists/postdoc-programme/# > Thomas Ruf: Ther- - A proficiency in molecular biology (prokaryotic exper- mogenesis in the wild boar: the role of Ca2+-cycling in tise being a bonus); - A sound knowledge physiology, myocytes (PD1215) < http://www.vetmeduni.ac.at/- biochemistry and Synthetic Biology; - Some computa- en/research/young-scientists/postdoc-programme/# tional competences such as scripting and experience in > Thomas R¨ulicke: CRISPR/Cas9 technology for interacting with modelers would be advantageous; - The routine in vitro and in vivo applications (Code PD1315) candidate is required to have a PhD in Biotechnology, < http://www.vetmeduni.ac.at/en/research/young- Microbiology, Molecular Life Sciences or related fields; scientists/postdoc-programme/# > - Fluent in English, both written and spoken; - The / candidate will collaborate in a team with scientists at departments of Systems and Synthetic Biology and of This message has been arbitrarily truncated at 5000 characters. Microbiology. To read the entire message look it up at http://life.biology.- We offer We offer you a temporary position for a period mcmaster.ca/˜brian/evoldir.html of 2 years with possibility for extension or, under spe- cific circumstances, to engage in a Tenure Track systems at the WUR. Gross salary 2855 to 3783, based on a fulltime employment and dependent on expertise and experience. Wageningen MicrobialSyntheticBiol We not only offer a competitive salary but also good (study) leave and a pension of the ABP Pension Fund. More information For more information about this po- Vacancy: Postdoc in Synthetic Biology sition, please contact Prof. V´ıtorMartins dos Santos, chair Systems and Synthetic Biology, telephone number We are looking for an enthusiastic, motivated Postdoc on +31 317482865. Synthetic Biology with a strong background in or affinity with experimental work in microorganisms. Candidates For more information about the contractual aspects, should be proficient in molecular biology, proactive, in- please contact Mrs. J. van Meurs, HR advisor, tele- dependent, team player and have the ability to engage phone number +31 317480101. with professionals in adjoining fields. Interested? You can apply online at The candidate should apply the concepts of synthetic www.wageningenur.nl/career until 30th April 2015. biology enhance our understanding of the fundamental We are Systems Biology is one of the spearheads of principles of signalling and regulatory networks in living the Wageningen UR, which invests considerably in this organism, to generate a mechanistic understanding with area. The mission of the Laboratory of Systems and the aim of constructing novel synthetic systems. Ex- Synthetic Biology is to contribute to the elucidation perience and willingness to interact with colleagues on of the mechanisms underlying basic cellular processes, large-scale genome engineering and re-factoring, and in- evolution and interactions among microbes and between terplay of the circuits designed and the host chassis (eg. microbes and their environment (including the human through omics and detailed biochemical measurements) host) and to translate this knowledge into applications will be a substantial bonus. Using an interdisciplinary of biotechnological, medical and environmental interest. and integrated approach the candidate should be able to The Agrotechnology & Food Sciences Group is part of work on a small scale/network level to develop/design, Wageningen UR where fundamental and applied sci- e.g., sensing devices for synthetic signalling networks ences complement each other. As an important Euro- within and across cells or the design of (opto) signal- pean player, we carry out top-level research and work sensing systems. The candidate should have working alongside authoritative partners within the international experience or be interested in applying in designing and business world as well as the government on ’Healthy implementing synthetic networks exhibiting complex food in a biobased society’. We have a crucial role in dynamic behaviour, such as adjustable time-delayed ex- innovations within the market. Entre preneurship and pression kinetics, tuneable synthetic oscillators or modu- professionalism are what define us. In short, we are an lar logic gates. He/she should be interested in applying interesting, international employer of stature. mathematical, physical and engineering principles in the design process. Wageningen University and Research centre delivering a substantial contribution to the quality of life. That We ask April 1, 2015 EvolDir 117 is our focus - each and every day. Within our domain, Wageningen University Laboratory of Systems and Syn- healthy food and living environment, we search for an- thetic Biology Wageningen Centre for Systems Biology swers to issues affecting society - such as sustainable (WCSB) Laboratory of Microbiology Building 316 Drei- food production, climate change and alternative energy. jenplein 10 6703 HB WAGENINGEN the Netherlands Of course, we do not do this alone. Every day, 6,500 phone +31 317 482105 fax +31 317 483829 email car- people work on ’the quality of life’, turning ideas into [email protected] reality, on a global scale. In the office at: Tuesday / Thursday / Friday 08.30 - Met vriendelijke groet, Kind regards, 17.00 hours Carolien Pinkster Secretary “Pinkster, Carolien”
WorkshopsCourses
Arizona Lepidoptera Aug16-25 ...... 117 Sicily SystemsBiol Jul5-9 ApplDeadlineMar31 . . . . 126 Aveiro Portugal AmphibianConservation May18-22 118 StPierredOleron France EvoEpigen May16-22 . . . . 127 Bialowieza Poland MetaBarcoding Jun1-5 ...... 119 SwissAlps Adaptation Jun17-20 ...... 128 CSIC Spain MacroevolutionPhylogenies Sep28-Oct2 120 UAzores EvolutionMicroorganisms Aug31-Sep5 . . .128 Debrecen Hungary Myrmecology Jul24-27 ...... 120 UBonn CrypticSpeciation Jun5-6 ...... 129 FridayHarbor ComparativeEmbrylogy Jun15-Jul17 120 UBremen EvolutionStatisticsUsingR ...... 129 Guaruji Brazil Metaanalysis Jun25-26 ...... 121 UExeter EvolutionaryBehaviour Jul6-9 ...... 130 Ilhabela Brazil PhylogeneticComparativeMethods Jul2- UMaryland Bioinformatics ...... 130 5 ...... 121 UMichigan EvolutionFieldCourses ...... 130 Lausanne ESEB2015 ActivelyTeachingEvolution Aug9 UMichigan Evolution May24-Aug22 ...... 131 122 UNewHampshire BioinformaticsForUndergrads Jul27- LipariIsland Italy Bioinformatics Jul19-25 ...... 122 30 ...... 131 NIMBioS EvolutionaryQuantGenetics Aug10-15 . . 123 UWestIndies Trinidad ViralEvolution Aug9-14 . . . 132 NorthCarolina EvolutionDisease May4-6 ...... 124 UWestIndies VirusEvolution Aug9-14 ...... 132 Raleigh NC BioinformaticsPractical May18-22 . . . .125 UYork EvolutionOfEvolution Jul24 ...... 133 Raleigh NC BioinformaticsPracticalTools May18-22 125 Venice EvoDevo Sep28-Oct1 ...... 134 Roscoff MarineEvolutionaryGenomics May31-Jun12 126
Held at the Southwestern Research Station (SWRS) in the Chirichahua Mountains in SE Arizona (a 2 1/2 hour drive from Tucson), the focus of the Lep course is to Arizona Lepidoptera Aug16-25 train graduate students, post-docs, faculty, state and federal employees, and serious citizen-scientists in the classification and identification of adult Lepidoptera and Announcing the Sixth Annual Lepidoptera Course, 16 their larvae. Topics to be covered include the biology V 25 August, 2015. 118 EvolDir April 1, 2015 and systematics of major families of Lepidoptera, an in- The course explores the principles of amphibians hus- troduction to adult and larval morphology with a focus bandry, nutrition and dietary needs, captive reproduc- on taxonomically-important traits, extensive field work tion, population management, veterinary aspects (dis- that concentrates on both collecting and photographing eases, pathology, and necropsy), biosecurity and quaran- adults and larvae, collecting and curatorial techniques, tine, conservation, threats and global action. Hands on genitalic dissection, larval classification, use (and abuse) demonstrations, practical and group exercises are also of DNA barcoding, and general topics in Lepidoptera included (enclosure demonstrations: tank drilling, false systematics, ecology, and evolution. bottoms and plumbing, filters). With its extensive series of Sky-Island mountain ranges, Speakers: SE Arizona has the highest Lepidoptera diversity in the Luis Carrillo, University of Mexico City, AArk US. With low desert scrub, oak and mixed oak-pine woodland, lush riparian, juniper, Douglas fir, and moun- Isabel Lopes, University of Aveiro, CESAM tain meadow habitats all within a 40 minute drive from To be confirmed. the station, the SWRS is an ideal location from which to sample this diversity (of both habitats and species). To be confirmed. If you want to interact with other Lepidoptera enthusi- Important note: the course will not start if a minimum asts, see a spectacular Dysschema, identify the Organ of 10 participants will not be reached; similarly the of vom Rath, sort through trap samples with hundreds maximum number of participants is 15. of species, learn about diversity of Lepidoptera , and Inscription fees include: attending at the course and the enjoy the vistas of the SE Arizona, then this course will use of all the materials provided by University of Aveiro provide a unique experience. and the AArk. Partial list of Invited instructors (subject to change) The course will be held in partnership with the or- Rich Brown (Mississippi Entomological Museum), Jen- ganization of the Advanced Course Ecotoxicology of nifer Bundy (RD4AG), Chris Grinter (Illinois Natural Amphibians and Reptiles: from theory to practice± History Survey), Don Harvey (Smithsonian), Sangmi (https://sites.google.com/site/ecotoxamre/). Registra- Lee (Arizona State University), Chris Schmidt (Cana- tion in both courses have reduced fees (through Ecotox dian National Collection), Bruce Walsh (University of course payment proof). Arizona) Fees: For more information, see http://research.amnh.org/- ACH Course only swrs/education/lepidoptera-course or www.lepcourse.org or contact Bruce Walsh at jb- General: 350 euros [email protected] You can also see photos and Student: 250 euros comments from students in the 2011 course at their facebook site, “2011 Lep Course, SWRS SEAZ”. UA Student: 250 euros “Walsh, James Bruce - (jbwalsh)” ACH Course (with Ecotox Registration)
a letter of motivation indicating how your researches are related to DNA metabarcoding and what you are hoping from this school. As part of the course program, each participant is required to give a flash talk (5 min- Bialowieza Poland MetaBarcoding utes) about its research and how it is related to DNA metabarcoding. Jun1-5 Registration deadline is 15 April 2015 Main lecturers Dear Colleagues, - Marta de Barba (LECA, CNRS, France) - Aur´elie Bonin (LECA, CNRS, France) - Fr´ed´ericBoyer (LECA, We are please to announce that this year the fifth DNA CNRS, France) - Antony Chariton (CSIRO, Australia) - Metabarcoding Spring School will held in Bialowieza Eric Coissac (LECA, CNRS, France) - HAvard˜ Kauserud (Poland) and will be organized in collaboration with (University of Oslo, Norway) - Dorota Porazinska (Uni- Rafal Kowalczyk and Jan W´ojcikfrom the Bialowieza versity of Florida, USA) - Pierre Taberlet (LECA, Mammal research institute. France) - Lucie Zinger (EDB, CNRS, France) Please take care than this year the registration period Course Schedule is really short and will end by April the 15th, 2015. The school will consist of a series of lectures and prac- http://metabarcoding.org/spip.php?article70 Best re- ticals introducing different aspects of DNA metabar- gards coding. Bioinformatics practicals will introduce data Eric Coissac analysis from raw sequences to basic ecological conclu- Dr Eric Coissac Associate professor Laboratoire sions. Molecular ecology practical will present basic d’Ecologie Alpine UMR CNRS-UJF 5553 / UMR CNRS technics for DNA extraction in field condition and DNA 5553 Universit´eJ. Fourier Domaine de Saint Martin amplification by PCR. More details are available on the d’H`eres2233, rue de la piscine BAt.˜ D Biologgie BP 53, following web page 38041 Grenoble Cedex 9 France http://metabarcoding.org/spip.php?article70 Travel The fifth DNA metabarcoding Spring School at and accommodation BiaAowie˚ A˚ 1 a ˚ ˚ 1 4 To join BiaAowieA 4 a, the easiest way is to reach War- DNA metabarcoding is a rapidly evolving method for saw airport. According to the number of participant, assessing biodiversity from environmental DNA. It has we will propose to you the most convenient solution to ˚ ˚ 1 a wide range of applications: biodiversity monitoring, travel from Warsaw to BiaAowieA 4 a the Sunday 31h animal diet assessment, reconstruction of paleo com- of March afternoon. munities, among others. DNA metabarcoding relies on Accommodation will be provided in double bedrooms molecular techniques such as PCR and next generation at the guesthouse located in the park close to the place sequencing, and requires bioinformatics and biostatis- of the school. Meals will be served at the same place at tics competence to analyze sequencing results. This the Parkowa restaurant. approach integrates several scientific areas and requires Workshop Costs a broad range of skills, in addition to the classical eco- logical knowledge related to the considered research There are no registration fees for the workshop. Partici- topic. pants will have to pay for their accommodation, meals and travel expenses. The cost for accommodation and The DNA metabarcoding spring school is now in its fifth meals for 6 days is estimated to 1500 PLN ( 360ˆa¬). edition and this year it is co-organized by the metabar- coding.org team and the Mammal Research Institute, [email protected] ˚ ˚ 1 Polish Academy of Sciences in BiaAowieA 4 a, Poland. The DNA metabarcoding spring school will hold from the 1st to 5th of June 2015. Participants can register for the school (24 places) by sending an email to the following address : [email protected] The email must contain a brief curriculum vitae and 120 EvolDir April 1, 2015
CSIC Spain MacroevolutionPhylogenies Debrecen Hungary Myrmecology Sep28-Oct2 Jul24-27
Dear colleagues, Dear Colleagues, Registration is open for the course “THE USE OF PHY- We kindly invite you to the 6th Central European LOGENIES IN THE STUDY OF MACROEVOLU- Workshop of Myrmecology held in Debrecen, Hungary TION - 3rd edition”, Septiembre 28-October 2, 2015. between 24-27 July 2015. Please visit our webpage: Instructor: Dr. Juan L´opez Cantalapiedra (Museo de cewm2015.unideb.hu for details and subscribe to our Ciencias Naturales, CSIC, Spain). newsletter: http://cewm2015.unideb.hu/news PLEASE NOTE, the extended deadline of registration and Ab- New phylogenetic methods would allow us to draw on stract submission is the midnight of 23rd of March! We the information encapsulated in phylogenetic trees in are sorry if you received this newsletter a bit late. order to address a wide range of questions on macroevo- lution. First, this course will introduce participants to Best Regards, the use, modification and representation of phylogenetic the Organisers trees. Then, we will focus on the use of phylogenetic information to reconstruct ancestral characters and bio- Contact info: [email protected] Homepage: geographic histories, learning how to apply phylogenetic http://cewm2015.unideb.hu/ Registration: http://- comparative methods. This course will also tackle trait regisztracio.unideb.hu/en/cewm2015 List archives: evolution modelling and the assessment of phylogenetic http://levlista.unideb.hu/cgi-bin/mailman/private/- signal. Finally, we will learn about the shape of phy- cewm2015/ Thank you very much in advance, logenetic trees and its evolutionary causes and how to Andr´asTartally and the other Organisers estimate the rates of diversification throughout the evo- CEWM 2015 contact
Generation Sequencing and other High-throughput tech- nia) Prof. Raffaele Giancarlo (University of Palermo) niques provide a strong support for scientists working Prof. Concettina Guerra (Georgia Institute of Technol- in this field. Our main and special guest lectures will ogy) Prof. Michael Levitt (Stanford University) address the scope focusing on algorithms, computational Dr. Rosalba Giugno (co-director, University of Cata- models, biomedical and biotechnological results on this nia) Prof. Alfredo Pulvirenti (co-director, University of field. From the enclosed bibliography, it appears that Catania) the selected themes have received much attention in the scholarly literature ranging from Nature and Science to People interested in receiving further information about Bioinformatics Journals. the school can contact: Speakers Lipari School Organization Prof. Alfredo Ferro – Li- pari School secretary Universit`adegli Studi di Catania - Peer Bork Network Dynamics European Molecular Bi- Dipartimento di Matematica e Informatica Citt`aUni- ology Laboratory (EMBL), Heidelberg, GERMANY versitaria - Viale A.Doria, 6 - 95125 Catania - ITALY Jeff Gore Evolutionary Game-Theoretic Models MIT, Tel: +39 095 7383071 Fax: +39 095 7337032 / +39 095 Massachussets, USA 330094 E-mail: [email protected] Laxmi Parida Evolutionary Dynamics IBM, Thomas J. Alfredo Ferro
Participants will be arranged in a comfortable hotel at Please distribute to interested colleagues. very special rates. The conference room (in the same ho- tel) is air-conditioned and equipped with all conference The National Institute for Mathematical and Biological materials. Special areas are reserved to students for the Synthesis (NIMBioS) is now accepting applications for afternoon coursework and study. The island of Lipari its Tutorial, “Evolutionary Quantitative Genetics,” to can be easilyreached from Milazzo, Palermo, Naples, be held August 10-15, 2015, at NIMBioS. Messina and Reggio Calabria by ferry or hydrofoil (50 OBJECTIVES: Quantitative genetic theory has been minutes from Milazzo). Two kinds of participants are applied to a wide range of phenomena including the welcome. Students: Participants who are expected to evolution of differences between the sexes, sexual pref- do afternoon courseworks and take a final exam (The erences, life history traits, plasticity of traits, as well grades will be given following the ECTS grading scale). as the evolution of body size and other morphological The course will involve a total of 24 hours of teach- measurements. This tutorial is for evolutionary biolo- ing. According to our university rules passing the final gists interested in how quantitative genetics theory can exam gives right to an equivalent of 6 ECTS credits be tested with data, both from single species and with in any Ph.D. program. Auditors: participants who are multiple-species phylogenies. Participants – graduate not interested in taking the final exam. Registration students, postdocs, and junior faculty – will learn how fee is 470 Euros. The fee covers the course material, to use R to build and test evolutionary models. There bus+hydrofoil Catania airport-Lipari-Catania airport, is a need for evolutionary biologists to understand the social event. Late registration is 570 Euros. field of evolutionary quantitative genetics because of the Applications can be submitted from November 1, 2014 ability to collect large amounts of data by computer, up to May 29, 2015. Late registrations will be accepted the development of statistical methods for changes of until July 14th. Admission notification will start on traits on evolutionary trees and for changes in a single March 2nd, according to registration time. Applicants species through time, and the realization that quanti- must include a short curriculum vitae. tative characters will not soon be fully explained by genomics. The official language is English. The content of this tutorial will be similar to the School Directors Prof. Alfredo Ferro (University of Cata- workshop held at NIMBioS in 2014. For information 124 EvolDir April 1, 2015 about the Evolutionary Quantitative Genetics 2014 tu- subscribe to our bi-monthly newsletter, click here torial held at NIMBioS, visit http://www.nimbios.org/- http://visitor.r20.constantcontact.com/manage/optin/- tutorials/TT eqg . LOCATION: NIMBioS at the Uni- ea?v=001RgvbKVLa7a4Psoj8H7c43A%3D%3D Joe versity of Tennessee, Knoxville Felsenstein
with different research backgrounds; not more than one person per institute will be considered. We implement a gender policy. The selected persons will be notified by March 25th and Roscoff will have to confirm attendance within 7 days. There is MarineEvolutionaryGenomics a waiting list in case of non- confirmations and cancel- May31-Jun12 lations. Teaching staff : Jonas Coll´en,SB-Roscoff, FR Simon Creer, Univ. Bangor, UK Yves Desdevises, OO-Banyuls, FR Jakob Hemmer-Hansen, DTU-Aqua, DK Erica SUMMER COURSE ON MARINE GENOMICS Leder, Univ. Turku, Fi Fr´ed´ericPartensky, SB-Roscoff, AT THE MARINE BIOLOGICAL STATION OF FR Daniel Vaulot, SB-Roscoff Filip Volckaert, Univ. ROSCOFF (F) Leuven, BE Mathias Wegner, AWI-Sylt, GE Second announcement Organizing committee Jonas Coll´en,SB-Roscoff, FR >From May 31st - June 12th, 2015 the 11th Summer Damien Guiffant, SB-Roscoff, FR Matthias Obst, Univ. Course on Marine Evolutionary & Ecological Genomics Gothenburg, SE Sarah Bourlat, Univ. Gothenburg, SE takes place at the Station Biologique de Roscoff, Roscoff, Nic Blouin, Univ. Rhode Island, USA Nathalie Turque, France. EMBRC-France, FR Filip Volckaert, Univ. Leuven, BE Aims: Genomic knowledge is crucial for understanding For information, a flyer and application please check the marine environment and for an efficient use of its http://meeg2015.sciencesconf.org . The application resources. State of the art NGS methods have revolution- deadline is March 10 2015. ized the field, spawning applications in basic research Filip Volckaert
** Industrial Panel ** * Jon D. Chesnut, Life Sciences So- http://rtp-3e.wix.com/rt3e#!et-3e/cwad This event is lutions Group -Thermo Fisher Scientific, USA * Speaker organised by the research network 3E (Epigenetics in TBA, Autodesk Inc., USA * Zach Serber, Zymergen, Ecology and Evolution). Inscription is free for CNRS Inc. USA members. Non-CNRS are asked to contribute 150 for School Directors Jef D. Boeke, New York University, PhD students and 300 for PostDocs etc. The number USA Giuseppe Nicosia, University of Catania, Italy of participants is limited to 40. Mario Pavone, University of Catania, Italy Giovanni Official languages are French and English. Stracquadanio, University of Oxford, UK Deadline for inscription is March 20, 2015. ** Short Talk and Poster Submission ** Students may Please don’t hesitate to contact me for further informa- submit a research abstract for presentation. School di- tion. rectors will review the abstracts and will recommend for poster or short-oral presentation. Abstract should Very best regards - Christoph Grunau be submitted by March 31, 2015. The abstracts will be ˆa published on the electronic hands-out material of the summer school. Programme: http://www.taosciences.it/ssbss2015/- - Aspects historiques et ´epist´emologiques de index.html#applicationForm http://- l’´epig´en´etique Francesca Merlin (CR2, CNRS- www.taosciences.it/ssbss2015/ [email protected] IHPST), Antonine Nicoglou (PostDoc Labex “Who Am I?”, CRPMS & Institut Jacques Monod, IHPST) Apologies for multiple copies. Please forward to any- Conf´erence/d´ebat body who might be interested. - Bases ´epig´en´etiques de la plasticit´e et variabilit´e [email protected] ph´enotypiques St´ephaneMaury (Pr. Univ Orl´eans), Marie Mirouze (CR2, IRD) Cours interactif - Rˆole de l’´epig´en´etique dans la structuration et l’´evolution des g´enomesMarie Mirouze (CR2, IRD), Cl´ementine Vitte (CR1, CNRS) Cours interactif StPierredOleron France EvoEpigen - Concepts et mod`elesde l’h´eritabilit´eFrank Johannes May16-22 (Pr. Univ of Groningen), Etienne Danchin (DR CNRS) Cours interactif - Techniques d’´epig´en´etiquemol´eculaire: quels outils Bonjour, pour quelles questions St´ephaneMaury (Pr. Univ), Rappel: les inscriptions pour l’´ecoleth´ematiqueEco- Marie Mirouze (CR2, IRD), Clementine Vitte TD/TP Evo-Epigen le 18-22 Mai 2015 `aSt.Pierre d’Ol´eronsont - Analyse et traitement des donn´ees(BS-Seq, Me-DIP, ouverts sur le site ChIP-Seq) Christoph Grunau (Pr. Univ), Cl´ementine http://rtp-3e.wix.com/rt3e#!et-3e/cwad L’´ecoleest or- Vitte (CR1, CNRS) TD/TPbioinfo ganis´epar le R´eseauth´ematiquepluridisciplinaire (RTP) - Techniques sp´ecifiques`al’analyse ADN r´ep´et´eeset 3E Epig´en´etiqueen Ecologie et Evolution. La participa- ARNs non-codants Cristina Vieira (Pr. Univ), tion `al’´ecoleth´ematiqueest gratuit pour les membres Emmanuelle Lerat (CR1, CNRS) TD/TPbioinfo CNRS. Pour les membres externes: thesards 150, Post- Doc/IE/IR/ 300. Le nombre de participants est limit´e - D´efinitionde l’´epig´en´etiqueFrank Johannes (Pr. Univ `a40. of Groningen), Antonine Nicoglou (PostDoc Labex “Who Am I?”, CRPMS & Institut Jacques Monod, IH- Date limite est le 20 mars 2015. PST) table ronde A tr`esbientˆot- Christoph Grunau - Vers une nouvelle conception de l’h´er´edit´e,implica- ˆa tions ´evolutives Francesca Merlin (CR2, CNRS-IHPST), Etienne Danchin (DR CNRS) table ronde Dear Colleagues, Christoph Grunau Prof. des Universit´es/Professor Reminder: I am happy to announce that the enrolle- (HDR) IHPE UMR 5244 Universit´e de Perpignan ments for the CNRS “summer” school Eco-Evo-Epigen Via Domitia 58 Avenue Paul Alduy BAt˜ R F-66860 the 18-22 Mai 2015 in St.Pierre d’Ol´eron(France) are Perpignan Cedex, France Tel 33 (0)4.68.66.21.80 Fax now open on our website 128 EvolDir April 1, 2015
33 (0)4.68.66.22.81 http://ihpe.univ-perp.fr/ http:/- (FR) /methdb.univ-perp.fr/epievo/ Christoph Grunau Cost:
UMichigan Evolution May24-Aug22 Dear Colleagues, I wanted to bring your attention to the following summer workshop opportunity for undergraduate Course Announcement: Natural History and Evolution students - *accepted students will be fully funded to attend the workshop*, courtesy of an NSF Re- The University of Michigan Biological Station (UMBS) search Coordination Network award. Application offers a diverse set of courses in both a four-week spring deadline is April 13th, and full details can be term (May 24 to June 20) and an eight-week summer found here: https://eukhits.wordpress.com/2015/- term (June 27 to August 22). One of the summer 03/02/applications-now-open-for-the-summer-2015- courses is a field course in evolutionary biology (EEB bioinformatics-biodiversity-undergraduate-workshop/ 390, Natural History and Evolution). This course is *’Bioinformatics & Biodiversity’ Undergraduate intended for undergraduate biology majors or first-year Workshop* *July 27-30, 2015* *University of New graduate students who want a strong foundation in evo- Hampshire, Durham, NH* lutionary biology and exposure to methods of studying evolution in the field. The class meets all day twice Microscopic eukaryotes (meiofauna e.g. nematode a week, Tuesdays and Fridays. Mornings include lec- worms, copepods, protists, fungi, etc.) are some of tures and afternoons are devoted to fieldwork either for the most abundant animals on Earth, but species within demonstration or for individual research projects. Lec- these groups are often overlooked by the general public ture topics include all aspects of evolution, from theory, and even many biologists. This NSF-sponsored work- molecular evolution, and phylogenetics to aspects of shop will explore the field of environmental DNA se- evolutionary biology that are amenable to observation quencing, including collection and analysis of data. Stu- in the field, including speciation, coevolution, sexual se- dents will learn how high-throughput approaches (rRNA lection, sex ratio, and social behavior. Students conduct gene surveys, metagenomics) are being used to investi- independent projects, which in the past have focused gate the biodiversity of microbial eukaryotes and deepen on plants, crayfish, aquatic invertebrates, damselflies our knowledge of ecosystem function. The workshop and dragonflies, and birds. Numerous field trips will program will be a combination of lectures and practical be taken to study the biological diversity of northern exercises, where students will learn about traditional Michigan and to understand the importance of human taxonomic approaches and also gain experience using modifications of the environment. Northern Michigan the command line and bioinformatics tools to analyze is a fabulous place to spend the summer and there are environmental DNA datasets. many opportunities for outdoor activities when not in For more information please contact Holly Bik the classroom. ([email protected]) Application material and other details can be found [email protected] at the station’s web site (http://www.lsa.umich.edu/- umbs/). Students attending taking courses during the summer term typically take two courses, and details 132 EvolDir April 1, 2015
statement of motivation. A limited number of grants are available for scientists who experience difficulties to attend because of financial reasons. Selection criteria: (in order of importance) UWestIndies Trinidad 1. Quality of the abstract: abstracts will be reviewed ViralEvolution Aug9-14 and priority will be given to applicants who are first author on the abstract. 2. Letter of motivation: how urgent/important is your need for training? 3. Each module is preferably restricted to 1 participant from the ’20th International Bioinformatics Workshop on Virus same lab. 4. Priority will be given to participants from Evolution and Molecular Epidemiology“ countries with limited resources. The University of the West Indies (UWI), St. Augustine Grant criteria: (in order of importance) Campus, Trinidad and Tobago 1. Priority to countries with limited resources. 2. Rank- Sunday, August 9 - Friday, August 14, 2015 ing according to the abstract quality. Dear colleague, Additional information and application forms are avail- We are announcing the organization of the international able on our website: http://www.rega.kuleuven.be/cev/- workshop on Virus Evolution and Molecular Epidemiol- veme-workshop/2015 We are confident that this course ogy (VEME) in 2015, hosted by the University of the meets the needs of many molecular virologists and epi- West Indies (UWI), St. Augustine, Trinidad and Tobago demiologists, and hope we can assist you in your search on behalf of our main sponsor the International Com- for training in Bioinformatics methods. mittee for Genetic Engineering and Biotechnology. The Yours sincerely, workshop is co-organised by the University of Leuven (Belgium) and the J. Craig Venter Institute (USA). Christine Carrington, Karen Nelson and Annemie Vandamme Organizers of the workshop Contact: We plan to organize a ’Phylogenetic Inference’ module [email protected] that offers the theoretical background and hands-on experience in phylogenetic analysis for those who have ”Foley, Brian Thomas“
The workshop will provide 90 participants with intensive tobago-veme-bioinformatics-2015.html The University training in the mathematical principles and computer of Edinburgh is a charitable body, registered in Scotland, applications used in the study virus evolution and for with registration number SC005336. conducting detailed molecular epidemiological investiga- [email protected] tions. The workshop will include lectures and computer practical session where students will have the opportu- nity to analyse their own research data. Each student will also present a poster about their research. The target group are trainee scientists starting their UYork EvolutionOfEvolution Jul24 scientific career, i.e. graduate research student, post- doctoral researchers and specialised research technicians (bio informaticians). The workshop teachers will be 24 CALL FOR PAPERS/ABSTRACTS world-renowned researchers from top international uni- versities and research institutions. Interaction among EvoEvo workshop participants and teaching staff is a key element, so the Satellite workshop of the 13th European Conference on ratio of teachers to students will be maintained at no Artificial Life (ECAL 2015) less than 1:4. A limited number of scholarships will be provided. There is no country restriction to attend, but Friday July 24th 2015, University of York, York, UK scholarships are restricted to resource limited countries. Variation and Selection are the two core processes of Participants will have the opportunity to attend one of Darwinian Evolution. Yet, both are directly regulated the three 4-day modules and their choice of two of the by many processes that are themselves products of evo- 6 half-day modules: lution (e.g. DNA repair, mutator genes, transposable elements, horizontal transfer, stochasticity of gene ex- Three 4-day modules pression, sex, network modularity, niche construction...). - ’Phylogenetic Inference’ offers the theoretical back- This results in the ability of evolution to self-modify ground and hands-on experience in phylogenetic anal- its operators, hence its dynamics. We call this process ysis for those who have little or no prior expertise in “Evolution of Evolution” or EvoEvo. Different EvoEvo sequence analysis strategies have been proposed in the literature, including regulation of variability, robustness/evolvability strate- - ’Evolutionary Hypothesis Testing’ is targeted to partic- gies, bet-hedging... However, most of these strategies ipants who are well familiar with alignments and phylo- are poorly characterized and the conditions under which genetic trees and would like to extend their expertise to they evolve as well as their consequences are generally likelihood and Bayesian inference in phylogenetics, coa- unknown. lescent and phylogeographic analyses (’phylodynamics’) The aim of the EvoEvo workshop is to seek for a unified - ’Large Dataset Analysis’ will cover the more complex theory of Evolution of Evolution by studying its biologi- analysis of full genomes, huge datasets of pathogens cal mechanisms, evolutionary consequences and possible including Next Generation Sequencing data, and com- applications to bioinspired computation. The workshop bined analyses of pathogen and host. will take place as a satellite workshop of ECAL 2015: Six 1/2-day modules: the 13th European Conference on Artificial Life (http:/- - Morning - ˆaLarge Phylogenies’, ˆaTransmission Chain /ecal2015.alife.org), University of York, York, UK. The Investigation’ and ˆaMolecularAdaptation’ EvoEvo workshop is an initiative of the EvoEvo con- sortium (http://www.evoevo.eu) funded by the FP7 - Afternoon - ˆaVisualizationof Large Phylogenies with EU-FET grant EvoEvo (ICT-610427). Metadata’, ˆaRecombination and Networks’ and ˆaVirus Analysis Tools’ AREAS OF INTEREST Practical sessions in these modules will involve various We are seeking submissions that explore all aspects of software packages, including PHYLIP, PAUP*, PHYML, “Evolution of Evolution”, including theoretical and ex- MEGA, PAML or HYPHY, TREE-PUZZLE, SplitsTree, perimental works (including in vivo, in vitro and in silico BEAST, MrBayes, Simplot, RDP3, QuRE. experiment). Topics include but are not limited to: Detailed information and online applications may - Evolution of robustness and evolvability, evolution of be accessed at: http://rega.kuleuven.be/cev/veme- pleiotropy - Evolution of mutation rates, regulation of workshop/2015OR http://www.icgeb.org/trinidad-and- variability, mutators, transposable elements, chromoso- mal rearrangements - Open-ended evolution - Evolution 134 EvolDir April 1, 2015 of the genotype-to-phenotype mapping - Niche construc- Fax: +34 963 877 859 E-mail: [email protected] tion, evolution of trophic networks, evolution of coop- Web: http://bioxeon.ibmcp.upv.es/EvolSysVir The eration - Evolution of genes and metabolic networks, Santa Fe Institute 1399 Hyde Park Road Santa Fe, evolution of modularity - Evolution of stochastic gene NM 87501 USA Web:www.santafe.edu/about/people/- expression and bet-hedging - Modeling and simulation profile/Santiago%20F.%20Elena “Santiago F. Elena” of EvoEvo, EvoEvo and fitness landscapes/seascapes -
Instructions
Instructions: To be added to the EvolDir mailing list please send an email message to [email protected]. At this time provide a binary six letter code that determines which messages will be mailed to you. These are listed in the same order as presented here — Conferences; Graduate Student Positions; Jobs; Other; Post-doctoral positions; WorkshopsCourses. For example to receive the listings that concern conferences and post-doctoral positions this would be 100010. Messages are categorized on the basis of their subject headings. If this subject heading is not successfully parsed, the message will be sent to me at [email protected]. In addition, if it originates from ‘blackballed’ addresses it will be sent to me at [email protected]. These messages will only be read and dealt with when I have time. The code 000000 has all channels turned off and hence gets only a once monthly notifcation of the availability of a monthly review pdf file. To be removed from the EvolDir mailing list please send an email message to [email protected]. Note that ‘on vacation’, etc, style messages are automatically filtered and should not be transmitted to the list (I hope), but should you wish to avoid the e-mail’s your code can be temporarily changed to 000000. To send messages to the EvolDir direct them to the email [email protected]. Do not include encoded attachments and do not send it as Word files, as HTML files, as LATEX files, Excel files, etc. . . . plain old ASCII will work great and can be read by everyone. Add a subject header that contains the correct category “Conference:, Graduate position:, Job:, Other:, Postdoc:, Workshop:” and then the message stands a better chance of being correctly parsed. Note that the colon is mandatory. The message will be stored until the middle of the night (local time). At a predetermined time, the collected messages will be captured and then processed by programs and filters. If the message is caught by one of the filters (e.g. a subject header is not correctly formated) the message will be send to me at [email protected] and processed later. In either case, please do not expect an instant response.
Afterword
This program is an attempt to automatically process a broad variety of e-mail messages. Most preformating is collapsed to save space. At the current time, many features may be incorrectly handled and some email messages may be positively mauled. Although this is being produced by LATEX do not try to embed LATEX or TEX in your message (or other formats) since my program will strip these from the message.