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Evolutionary Genetics and the Major Histocompatibility Complex of New Zealand Robins (Petroicidae)
Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author. Evolutionary Genetics and the Major Histocompatibility Complex of New Zealand Robins (Petroicidae) Hilary C. Miller A thesis submitted for the degree of Doctor of Philosophy in Molecular BioSciences at Massey University, New Zealand June 2003 The founding black robin pair, Old Blue (above), and Old Yellow (right) Photo: Rod Morris The South Island robin Photo: J. Kendrick (DOe) Abstract The genes ofthe major histocompatibility complex (MHC) are highly polymorphic and play a direct role in disease resistance. Loss of variation at MHC loci may increase extinction risk in endangered species, due to an inability to combat a range of pathogens. In this thesis, the evolution of class II B MHC genes is investigated, and levels of variation at these loci are measured in two species of New Zealand robin, the endangered Chatham Island black robin (Petroica traversi), and the non-endangered South Island robin (Petroica australis australis). Transcribed class II B MHC loci from both black robin and South Island robin were characterised prior to analysis ofMHC variation. To this end, a non-lethal protocol fo r isolation of transcribed sequences from blood using 3'RA CE and RT-PCR was developed. Four class II B cDNA sequences were isolated frombla ck robin, and eight sequences were isolated from the South Island robin, indicating there are at least fo ur class II B loci. -
Disaggregation of Bird Families Listed on Cms Appendix Ii
Convention on the Conservation of Migratory Species of Wild Animals 2nd Meeting of the Sessional Committee of the CMS Scientific Council (ScC-SC2) Bonn, Germany, 10 – 14 July 2017 UNEP/CMS/ScC-SC2/Inf.3 DISAGGREGATION OF BIRD FAMILIES LISTED ON CMS APPENDIX II (Prepared by the Appointed Councillors for Birds) Summary: The first meeting of the Sessional Committee of the Scientific Council identified the adoption of a new standard reference for avian taxonomy as an opportunity to disaggregate the higher-level taxa listed on Appendix II and to identify those that are considered to be migratory species and that have an unfavourable conservation status. The current paper presents an initial analysis of the higher-level disaggregation using the Handbook of the Birds of the World/BirdLife International Illustrated Checklist of the Birds of the World Volumes 1 and 2 taxonomy, and identifies the challenges in completing the analysis to identify all of the migratory species and the corresponding Range States. The document has been prepared by the COP Appointed Scientific Councilors for Birds. This is a supplementary paper to COP document UNEP/CMS/COP12/Doc.25.3 on Taxonomy and Nomenclature UNEP/CMS/ScC-Sc2/Inf.3 DISAGGREGATION OF BIRD FAMILIES LISTED ON CMS APPENDIX II 1. Through Resolution 11.19, the Conference of Parties adopted as the standard reference for bird taxonomy and nomenclature for Non-Passerine species the Handbook of the Birds of the World/BirdLife International Illustrated Checklist of the Birds of the World, Volume 1: Non-Passerines, by Josep del Hoyo and Nigel J. Collar (2014); 2. -
China Birding Report Template
Arunachal Pradesh, India (Eaglenest, Dirang and Nameri) 5-15 April 2007 Graham Talbot, Ramana Athreya, Mike Turnbull, Chris Campion, Bjorn Anderson and Joakim Hammar with the endemic-rich eastern Himalayas in the background Björn Anderson General This is a report from a highly successful trip to the eastern Himalayas together with Hong Kong birding companions Joakim (Jocko) Hammar, Chris Campion, Graham Talbot and Mike Turnbull. CC, GT and MT sneaked away from non-birding duties a few days earlier than Jocko and myself and thereby also squeezed in Kaziranga. Two years ago Eaglenest would have required a full presentation, but with the published discovery of the Bugun Liocichla in 2006 the place is on everyone’s lips. In fact more than 250 Indian and foreign birders made the pilgrimage to Eaglenest in early 2007! If the Bugun people ever doubted that their forest would be of international interest, they are by now proven quite wrong. I and Jocko spent six nights at Eaglenest before moving to Dirang for two nights and finishing off with one morning at Nameri in the Assam lowlands. We were fortunate to enjoy the company and guiding of Ramana Athreya the entire time. Ramana is the birder who first found and described the Bugun Liocichla and made Eaglenest known to the birding community. Highlights This is one of those places on earth where you in a short period of time can see so many good birds that it is difficult to pick out a top five, even a top ten! - The absolutely unconcerned male Ward’s Trogon that gave itself up after 18 hours of -
Malawi Trip Report 12Th to 28Th September 2014
Malawi Trip Report 12th to 28th September 2014 Bohm’s Bee-eater by Keith Valentine Trip Report compiled by Tour Leader: Keith Valentine RBT Malawi Trip Report September 2014 2 Top 10 Birds: 1. Scarlet-tufted Sunbird 2. Pel’s Fishing Owl 3. Lesser Seedcracker 4. Thyolo Alethe 5. White-winged Apalis 6. Racket-tailed Roller 7. Blue Swallow 8. Bohm’s Flycatcher 9. Babbling Starling 10. Bohm’s Bee-eater/Yellow-throated Apalis Top 5 Mammals: 1. African Civet 2. Four-toed Elephant Shrew 3. Sable Antelope 4. Bush Pig 5. Side-striped Jackal/Greater Galago/Roan Antelope/Blotched Genet Trip Summary This was our first ever fully comprehensive tour to Malawi and was quite simply a fantastic experience in all respects. For starters, many of the accommodations are of excellent quality and are also situated in prime birding locations with a large number of the area’s major birding targets found in close proximity. The food is generally very good and the stores and lodges are for the most part stocked with decent beer and a fair selection of South African wine. However, it is the habitat diversity that is largely what makes Malawi so good from a birding point of view. Even though it is a small country, this good variety of habitat, and infrastructure that allows access to these key zones, insures that the list of specials is long and attractive. Our tour was extremely successful in locating the vast majority of the region’s most wanted birds and highlights included Red-winged Francolin, White-backed Night Heron, African Cuckoo-Hawk, Western Banded Snake -
A Complete Species-Level Molecular Phylogeny For
Author's personal copy Available online at www.sciencedirect.com Molecular Phylogenetics and Evolution 47 (2008) 251–260 www.elsevier.com/locate/ympev A complete species-level molecular phylogeny for the ‘‘Eurasian” starlings (Sturnidae: Sturnus, Acridotheres, and allies): Recent diversification in a highly social and dispersive avian group Irby J. Lovette a,*, Brynn V. McCleery a, Amanda L. Talaba a, Dustin R. Rubenstein a,b,c a Fuller Evolutionary Biology Program, Laboratory of Ornithology, Cornell University, Ithaca, NY 14950, USA b Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14850, USA c Department of Integrative Biology and Museum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA Received 2 August 2007; revised 17 January 2008; accepted 22 January 2008 Available online 31 January 2008 Abstract We generated the first complete phylogeny of extant taxa in a well-defined clade of 26 starling species that is collectively distributed across Eurasia, and which has one species endemic to sub-Saharan Africa. Two species in this group—the European starling Sturnus vulgaris and the common Myna Acridotheres tristis—now occur on continents and islands around the world following human-mediated introductions, and the entire clade is generally notable for being highly social and dispersive, as most of its species breed colonially or move in large flocks as they track ephemeral insect or plant resources, and for associating with humans in urban or agricultural land- scapes. Our reconstructions were based on substantial mtDNA (4 kb) and nuclear intron (4 loci, 3 kb total) sequences from 16 species, augmented by mtDNA NDII gene sequences (1 kb) for the remaining 10 taxa for which DNAs were available only from museum skin samples. -
Tinamiformes – Falconiformes
LIST OF THE 2,008 BIRD SPECIES (WITH SCIENTIFIC AND ENGLISH NAMES) KNOWN FROM THE A.O.U. CHECK-LIST AREA. Notes: "(A)" = accidental/casualin A.O.U. area; "(H)" -- recordedin A.O.U. area only from Hawaii; "(I)" = introducedinto A.O.U. area; "(N)" = has not bred in A.O.U. area but occursregularly as nonbreedingvisitor; "?" precedingname = extinct. TINAMIFORMES TINAMIDAE Tinamus major Great Tinamou. Nothocercusbonapartei Highland Tinamou. Crypturellus soui Little Tinamou. Crypturelluscinnamomeus Thicket Tinamou. Crypturellusboucardi Slaty-breastedTinamou. Crypturellus kerriae Choco Tinamou. GAVIIFORMES GAVIIDAE Gavia stellata Red-throated Loon. Gavia arctica Arctic Loon. Gavia pacifica Pacific Loon. Gavia immer Common Loon. Gavia adamsii Yellow-billed Loon. PODICIPEDIFORMES PODICIPEDIDAE Tachybaptusdominicus Least Grebe. Podilymbuspodiceps Pied-billed Grebe. ?Podilymbusgigas Atitlan Grebe. Podicepsauritus Horned Grebe. Podicepsgrisegena Red-neckedGrebe. Podicepsnigricollis Eared Grebe. Aechmophorusoccidentalis Western Grebe. Aechmophorusclarkii Clark's Grebe. PROCELLARIIFORMES DIOMEDEIDAE Thalassarchechlororhynchos Yellow-nosed Albatross. (A) Thalassarchecauta Shy Albatross.(A) Thalassarchemelanophris Black-browed Albatross. (A) Phoebetriapalpebrata Light-mantled Albatross. (A) Diomedea exulans WanderingAlbatross. (A) Phoebastriaimmutabilis Laysan Albatross. Phoebastrianigripes Black-lootedAlbatross. Phoebastriaalbatrus Short-tailedAlbatross. (N) PROCELLARIIDAE Fulmarus glacialis Northern Fulmar. Pterodroma neglecta KermadecPetrel. (A) Pterodroma -
Records of Four Critically Endangered Songbirds in the Markets of Java Suggest Domestic Trade Is a Major Impediment to Their Conservation
20 BirdingASIA 27 (2017): 20–25 CONSERVATION ALERT Records of four Critically Endangered songbirds in the markets of Java suggest domestic trade is a major impediment to their conservation VINCENT NIJMAN, SUCI LISTINA SARI, PENTHAI SIRIWAT, MARIE SIGAUD & K. ANNEISOLA NEKARIS Introduction 1.2 million wild-caught birds (the vast majority Bird-keeping is a popular pastime in Indonesia, and of them songbirds) were sold in the Java and Bali nowhere more so than amongst the people of Java. markets each year. Taking a different approach, It has deep cultural roots, and traditionally a kukilo Jepson & Ladle (2005) made use of a survey of (bird in the Javanese language) was one of the five randomly selected households in the Javan cities things a Javanese man should pursue or obtain in of Jakarta, Bandung, Semarang and Surabaya, order to live a fulfilling life (the others being garwo, and Medan in Sumatra, which together make up a wife, curigo, a Javanese dagger, wismo, a house or a quarter of the urban Indonesian population, to a place to live, and turonggo, a horse, as a means estimate that between 600,000 and 760,000 wild- of transportation). A kukilo represents having a caught native songbirds were acquired each year. hobby, and it often takes the form of owning a Extrapolating this to the urban population of Java, perkutut (Zebra Dove Geopelia striata) or a kutilang which amounts to 60% of Indonesia’s total, it (Sooty-headed Bulbul Pycnonotus aurigaster) but suggests that a total of 1.4–1.8 million wild-caught also a wide range of other birds (Nash 1993, Chng native songbirds were acquired. -
Reference File
References added since publication of 2007 CRC Handbook of Avian Body Masses Abadie, K. B., J. Pérez Z., and M. Valverde. 2006. Primer reporte de colonias del Martín Peruano Progne murphyi. Cotinga 24:99-101. Ackerman, J. T., J. Y. Takekawa, J. D. Bluso, J. L. Yee, and C. A. Eagles-Smith. 2008. Gender identification of Caspian Terns using external morphology and discriminant function analysis. Wilson Journal of Ornithology 120:378-383. Alarcos, S., C. de la Cruz, E. Solís, J. Valencia, and M. J. García-Baquero. 2007. Sex determination of Iberian Azure-winged Magpies Cyanopica cyanus cooki by discriminant analysis of external measurements. Ringing & Migration 23:211-216. Albayrak, T., A. Besnard, and A. Erdoğan. 2011. Morphometric variation and population relationships of Krüeper’s Nuthatch (Sitta krueperi) in Turkey. Wilson Journal of Ornithology 123:734-740. Aleixo, A., C. E. B. Portes, A. Whittaker, J. D. Weckstein, L. Pedreira Gonzaga, K. J. Zimmer, C. C. Ribas, and J. M. Bates. 2013. Molecular systematics and taxonomic revision of the Curve-billed Scythebill complex (Campylorhamphus procurvoides: Dendrocolaptidae), with description of a new species from western Amazonian Brazil. Pp. 253-257, In: del Hoyo, J., A Elliott, J. Sargatal, and D.A. Christie (eds). Handbook of the birds of the world. Special volume: new species and global index. Lynx Edicions, Barcelona, Spain. Volume 1. Alfano, A. 2014. Pygmy Nightjar (Nyctopolus hirundinaeus). Neotropical Birds Online (T.S. Schulenberg, ed.). Cornell Laboratory of Ornithology, Ithaca, NY. Alvarenga, H. M. F., E. Höfling, and L. F. Silveira. 2002. Notharchus swainsoni (Gray, 1846) é uma espécie válida. -
Nest Survival in Year-Round Breeding Tropical Red-Capped Larks
University of Groningen Nest survival in year-round breeding tropical red-capped larks Calandrella cinerea increases with higher nest abundance but decreases with higher invertebrate availability and rainfall Mwangi, Joseph; Ndithia, Henry K.; Kentie, Rosemarie; Muchai, Muchane; Tieleman, B. Irene Published in: Journal of Avian Biology DOI: 10.1111/jav.01645 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2018 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Mwangi, J., Ndithia, H. K., Kentie, R., Muchai, M., & Tieleman, B. I. (2018). Nest survival in year-round breeding tropical red-capped larks Calandrella cinerea increases with higher nest abundance but decreases with higher invertebrate availability and rainfall. Journal of Avian Biology, 49(8), [01645]. https://doi.org/10.1111/jav.01645 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. -
Eurylaimides Species Tree
Eurylaimides ⋆Velvet Asity, Philepitta castanea Schlegel’s Asity, Philepitta schlegeli ⋆ Philepittidae Common Sunbird-Asity, Neodrepanis coruscans Yellow-bellied Sunbird-Asity, Neodrepanis hypoxantha ⋆Grauer’s Broadbill, Pseudocalyptomena graueri ⋆Long-tailed Broadbill, Psarisomus dalhousiae ⋆ Eurylaimidae Dusky Broadbill, Corydon sumatranus Visayan Broadbill, Sarcophanops samarensis ⋆Wattled Broadbill, Sarcophanops steerii ⋆Silver-breasted Broadbill, Serilophus lunatus ⋆Black-and-red Broadbill, Cymbirhynchus macrorhynchos ⋆Banded Broadbill, Eurylaimus javanicus Black-and-yellow Broadbill, Eurylaimus ochromalus Gray-headed Broadbill, Smithornis sharpei Rufous-sided Broadbill, Smithornis rufolateralis Smithornithidae ⋆African Broadbill, Smithornis capensis Hose’s Broadbill, Calyptomena hosii ⋆Green Broadbill, Calyptomena viridis Calyptomenidae Whitehead’s Broadbill, Calyptomena whiteheadi ⋆Sapayoa, Sapayoa aenigma:0.1 Sapayoidae Blue-banded Pitta, Erythropitta arquata Garnet Pitta, Erythropitta granatina Graceful Pitta, Erythropitta venusta Black-crowned Pitta, Erythropitta ussheri Erythropitta Whiskered Pitta, Erythropitta kochi Philippine Pitta, Erythropitta erythrogaster Sula Pitta, Erythropitta dohertyi Sulawesi Pitta, Erythropitta celebensis Sangihe Pitta, Erythropitta caeruleitorques Siao Pitta, Erythropitta palliceps South Moluccan Pitta, Erythropitta rubrinucha North Moluccan Pitta, Erythropitta rufiventris Louisiade Pitta, Erythropitta meeki ⋆Papuan Pitta, Erythropitta macklotii Bismarck Pitta, Erythropitta novaehibernicae Pittidae -
COLOMBIA 2019 Ned Brinkley Departments of Vaupés, Chocó, Risaralda, Santander, Antioquia, Magdalena, Tolima, Atlántico, La Gu
COLOMBIA 2019 Ned Brinkley Departments of Vaupés, Chocó, Risaralda, Santander, Antioquia, Magdalena, Tolima, Atlántico, La Guajira, Boyacá, Distrito Capital de Bogotá, Caldas These comments are provided to help independent birders traveling in Colombia, particularly people who want to drive themselves to birding sites rather than taking public transportation and also want to book reservations directly with lodgings and reserves rather than using a ground agent or tour company. Many trip reports provide GPS waypoints for navigation. I used GoogleEarth/ Maps, which worked fine for most locations (not for El Paujil reserve). I paid $10/day for AT&T to hook me up to Claro, Movistar, or Tigo through their Passport program. Others get a local SIM card so that they have a Colombian number (cheaper, for sure); still others use GooglePhones, which provide connection through other providers with better or worse success, depending on the location in Colombia. For transportation, I used a rental 4x4 SUV to reach places with bad roads but also, in northern Colombia, a subcompact rental car as far as Minca (hiked in higher elevations, with one moto-taxi to reach El Dorado lodge) and for La Guajira. I used regular taxis on few occasions. The only roads to sites for Fuertes’s Parrot and Yellow-eared Parrot could not have been traversed without four-wheel drive and high clearance, and this is important to emphasize: vehicles without these attributes would have been useless, or become damaged or stranded. Note that large cities in Colombia (at least Medellín, Santa Marta, and Cartagena) have restrictions on driving during rush hours with certain license plate numbers (they base restrictions on the plate’s final numeral). -
Apapane (Himatione Sanguinea)
The Birds of North America, No. 296, 1997 STEVEN G. FANCY AND C. JOHN RALPH 'Apapane Himatione sanguinea he 'Apapane is the most abundant species of Hawaiian honeycreeper and is perhaps best known for its wide- ranging flights in search of localized blooms of ō'hi'a (Metrosideros polymorpha) flowers, its primary food source. 'Apapane are common in mesic and wet forests above 1,000 m elevation on the islands of Hawai'i, Maui, and Kaua'i; locally common at higher elevations on O'ahu; and rare or absent on Lāna'i and Moloka'i. density may exceed 3,000 birds/km2 The 'Apapane and the 'I'iwi (Vestiaria at times of 'ōhi'a flowering, among coccinea) are the only two species of Hawaiian the highest for a noncolonial honeycreeper in which the same subspecies species. Birds in breeding condition occurs on more than one island, although may be found in any month of the historically this is also true of the now very rare year, but peak breeding occurs 'Ō'ū (Psittirostra psittacea). The highest densities February through June. Pairs of 'Apapane are found in forests dominated by remain together during the breeding 'ōhi'a and above the distribution of mosquitoes, season and defend a small area which transmit avian malaria and avian pox to around the nest, but most 'Apapane native birds. The widespread movements of the 'Apapane in response to the seasonal and patchy distribution of ' ōhi'a The flowering have important implications for disease Birds of transmission, since the North 'Apapane is a primary carrier of avian malaria and America avian pox in Hawai'i.