Chapter 7 Concentric Bodies 7.1 INTRODUCTION the Term
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Key to the Species of Agonimia (Lichenised Ascomycota, Verrucariaceae)
Österr. Z. Pilzk. 28 (2019) – Austrian J. Mycol. 28 (2019, publ. 2020) 69 Key to the species of Agonimia (lichenised Ascomycota, Verrucariaceae) OTHMAR BREUSS Naturhistorisches Museum Wien, Botanische Abteilung (Kryptogamenherbar) Burgring 7 1010 Wien, Österreich E-Mail: [email protected] Accepted 29. September 2020. © Austrian Mycological Society, published online 25. October 2020 BREUSS, O., 2020: Key to the species of Agonimia (lichenised Ascomycota, Verrucariaceae). – Österr. Z. Pilzk. 28: 69–74. Key words: Pyrenocarpous lichens, Verrucariales, Agonimia, Agonimiella, Flakea. – Taxonomy, key. Abstract: A key to the 24 Agonimia species presently known is provided. A short survey of relevant literature on the genus and its affinities is added. Zusammenfassung: Ein Bestimmungsschlüssel zu den 24 bisher bekannten Agonimia-Arten wird vor- gelegt. Eine kurze Übersicht über relevante Literatur zur Gattung und ihrer Verwandtschaft ist beigefügt. Agonimia ZAHLBR. was introduced by ZAHLBRUCKNER (1909) for Agonimia tristicula (NYL.) ZAHLBR. and his newly described A. latzelii ZAHLBR. (now included within A. tristicula). It was not earlier than 1978 that another species was added to the genus: A. octospora (COPPINS & JAMES 1978). Later a handful of species previously treated in other genera (Polyblastia MASSAL., Physcia (SCHREB.) MICHX., Omphalina QUÉL.) have been transferred to Agonimia (COPPINS & al. 1992, VĚZDA 1997, SÉRUSIAUX & al. 1999, LÜCKING & MONCADA 2017, NIMIS & al. 2018). A couple of additional species have been described as new quite recently (SÉRUSIAUX & al. 1999; CZARNOTA & COP- PINS 2000; KASHIWADANI 2008; DYMYTROVA & al. 2011; GUZOW-KRZEMIŃSKA & al. 2012; APTROOT & CÁCERES 2013; HARADA 2013; KONDRATYUK 2015; KONDRATYUK & al. 2015, 2016, 2018; MCCARTHY & ELIX 2018). The circumscription of Agonimia is not fully clear. -
Agonimia Borysthenica, a New Lichen Species (Verrucariales) from Ukraine
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Österreichische Zeitschrift für Pilzkunde Jahr/Year: 2011 Band/Volume: 20 Autor(en)/Author(s): Dymytrova Lyudmyla V., Breuss Othmar, Kondratyuk Sergij Yakovych [Sergey Yakovlevich] Artikel/Article: Agonimia borysthenica, a new lichen species (Verrucariales) from Ukraine. 25-28 ©Österreichische Mykologische Gesellschaft, Austria, download unter www.biologiezentrum.at Österr.Z. Pilzk. 20 (2011) 25 Agonimia borysthenica, a new lichen species (Verrucariales) from Ukraine LYUDMYLA V. DYMYTROVA SERGIJ Y. KONDRATYUK Department of Lichenology and Bryology M. H. Kholodny Institute of Botany M. H. Kholodny Institute of Botany 2, Tereschenkivska str. 2, Tereschenkivska str. 01601 Kyiv, Ukraine 01601 Kyiv, Ukraine Email: [email protected] Email: [email protected] OTHMAR BREUSS Naturhistorisches Museum Wien, Botanische Abteilung Burgring 7 A-1010 Wien, Austria Email: [email protected] Accepted 12. 9. 2011 Key words: Lichens, Verrucariales, Agonimia borysthenica spec. nova. – New species. – Mycoflora of Ukraine. Abstract: The lichen Agonimia borysthenica is described as new. It is known only from the Dnieper river basin in Ukraine where it was found growing on bark of Quercus robur and Fraxinus excelsior. Zusammenfassung: Die Flechte Agonimia borysthenica wird neu beschrieben. Sie ist bislang nur aus dem Tal des Flusses Dnieper in der Ukraine bekannt, wo sie auf Borke von Quercus robur und Fraxi- nus excelsior gefunden wurde. Agonimia ZAHLBR. is a Verrucariacean genus similar to Polyblastia A. MASSAL. and differs from the latter by the 2- or 3-layered exciple, the lack of an involucrellum and consistently colourless ascospores. The thallus consists of aggregations of goniocysts or small squamules, the cortical cells of which are papillate in most species (ORANGE &PURVIS 2009). -
Molecular Phylogenetic Study at the Generic Boundary Between the Lichen-Forming Fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae)
Mycol. Res. 107 (11): 1266–1276 (November 2003). f The British Mycological Society 1266 DOI: 10.1017/S0953756203008529 Printed in the United Kingdom. Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae) Ulrik SØCHTING1 and Franc¸ ois LUTZONI2 1 Department of Mycology, Botanical Institute, University of Copenhagen, O. Farimagsgade 2D, DK-1353 Copenhagen K, Denmark. 2 Department of Biology, Duke University, Durham, NC 27708-0338, USA. E-mail : [email protected] Received 5 December 2001; accepted 5 August 2003. A molecular phylogenetic analysis of rDNA was performed for seven Caloplaca, seven Xanthoria, one Fulgensia and five outgroup species. Phylogenetic hypotheses are constructed based on nuclear small and large subunit rDNA, separately and in combination. Three strongly supported major monophyletic groups were revealed within the Teloschistaceae. One group represents the Xanthoria fallax-group. The second group includes three subgroups: (1) X. parietina and X. elegans; (2) basal placodioid Caloplaca species followed by speciations leading to X. polycarpa and X. candelaria; and (3) a mixture of placodioid and endolithic Caloplaca species. The third main monophyletic group represents a heterogeneous assemblage of Caloplaca and Fulgensia species with a drastically different metabolite content. We report here that the two genera Caloplaca and Xanthoria, as well as the subgenus Gasparrinia, are all polyphyletic. The taxonomic significance of thallus morphology in Teloschistaceae and the current delimitation of the genus Xanthoria is discussed in light of these results. INTRODUCTION Taxonomy of Teloschistaceae and its genera The Teloschistaceae is a well-delimited family of Hawksworth & Eriksson (1986) assigned the Teloschis- lichenized fungi. -
Notes on the Status and Typification of Some Names of Lichens Described from Greece
Opuscula Philolichenum, 18: 1-10. 2019. *pdf effectively published online 29January2019 via (http://sweetgum.nybg.org/philolichenum/) Notes on the status and typification of some names of lichens described from Greece LINDA IN ARCADIA1 ABSTRACT. – The names Borrera ciliaris var. glabrissima Bory, B. ciliaris var. nigrescens Bory, B. ciliaris var. tomentella Bory, Collema sublimosum J. Steiner and Verrucaria pinguis J. Steiner, all described from Greece, are discussed and lectotypified. A previous "lectotypification" of Verrucaria pinguis f. alocizoides is in fact a neotypification, but that is regarded as a correctable error. The names Parmelia conspersa var. complicata Bory and Ramalina farinacea var. nuda Bory are discussed but not typified. KEYWORDS. – Anaptychia, Europe, historical botany, nomenclature, taxonomy, Xanthoparmelia. INTRODUCTION The lichen biota of Greece is very rich, a consequence of the great topographic and climatic variety present within the country (Grove & Rackham 2001, Strid & Tan 1997), together with a varied geology (Higgins & Higgins 1996, Mountrakis 1995, Papanikolaou 2015). Human exploitation of the land for many millennia (e.g. Renfrew 1972) has certainly modified the biota, probably by reducing forest cover, especially in the lowlands, but most of the country is still covered by natural or at least semi-natural vegetation. Over 1420 species of lichens, lichenicolous and allied fungi have been reported from Greece (http://www.lichensofgreece.com/checklist), and hundreds more probably are present but not yet reported. However, as in much of southeastern Europe and the eastern Mediterranean, the lichens have received little serious study. Much of our knowledge comes from reports that are over a century old. A further difficulty is taxonomic in nature. -
Jervis Bay Territory Page 1 of 50 21-Jan-11 Species List for NRM Region (Blank), Jervis Bay Territory
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
View with Observations on Aureobasidium Pullulans
OPEN ACCESS Freely available online Fungal Genomics & Biology Research Article Characterization of Aureobasidium pullulans Isolates Selected as Biocontrol Agents Against Fruit Decay Pathogens Janja Zajc1,2*, Anja Černoša 2, Alessandra Di Francesco3, Raffaello Castoria4, Filippo De Curtis4, Giuseppe 4 5 5 6 2 2 Lima , Hanene Badri , Haissam Jijakli , Antonio Ippolito , Cene GostinČar , Polona Zalar , Nina Gunde- Cimerman2, Wojciech J. Janisiewicz7 1Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia; 2Department of Biology, University of Ljubljana, Ljubljana, Slovenia; 3Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy; 4Department of Agricultural, Environmental and Food Sciences, University of Molise, Campobasso, Italy; 5Agro-Bio Tech Laboratory, Integrated and Urban Phytopathology Unit, University of Liège, Gembloux, Belgium; 6Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy United States; 7Department of Agriculture, Agriculture Research Service, Appalachian Fruit Research Station, Kearneysville, USA ABSTRACT The "yeast-like" fungus, Aureobasidium pullulans, isolated from fruit and leaves exhibits strong biocontrol activity against postharvest decays on various fruit. Some strains were even developed into commercial products. We obtained 20 of these strains and investigated their characteristics related to biocontrol. Phylogenetic analyses based on internal transcribed spacer (ITS) and the D1/D2 domains of rRNA 28S gene regions confirmed that all the strains are most closely related to A. pullulans species. All strains grew at 0°C, which is very important to control decay at low storage temperature, and none grew at 37°C, which eliminates concern for human safety. Eighteen strains survived 2 hrs exposures to 50°C and two strains even survived for 24 hrs. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Native Pea Plants Walkabout KWG
Native Pea Plants Walkabout KWG standard (petal) wing wing (petal) (petal) keel (2 petals) Pea plants and wattles (botanically, members of the Fabaceae family) both possess root nodules containing nitrogen-fixing bacteria and have pods as their fruit. We classify the pea plants as Fabaceae, Subfamily Faboideae, the wattles as Fabaceae, Subfamily Mimosoideae. Many native pea plants grow in Ku-ring-gai Wildflower Garden, most of them with yellow–coloured flowers. Take a walk through the garden and see if you can find them. To help with their identification pictures of these species are shown below and underneath each picture a few key features are noted. Fuller descriptions of these plants can be found on Australian Plants Society – North Shore Group Blandfordia website: https://austplants.com.au/North-Shore/ in “Notes” on the Walks & Talks page. Excellent pictures can be found on the Hornsby Library website: www.hornsby.nsw.gov.au/library under: eLibrary, Learning and Research, Hornsby Herbarium. Detailed botanical descriptions are given on the PlantNET website: http://plantnet.rbgsyd.nsw.gov.au/ Dillwynias – all have ‘ear-like’ standards Phyllota phylicoides: standard Pultenaea stipularis: slight dip in Dillwynia floribunda (topmost picture): cathedral-shaped, new growth standard, stem densely covered with flowers dense towards end of branches extends beyond inflorescence, brown stipules Dillwynia retorta: twisted leaves green leaf-like bracteoles Bossiaea heterophylla: large dip in Bossiaea obcordata: large dip in Bossiaea scolopendria: -
Photobiont Relationships and Phylogenetic History of Dermatocarpon Luridum Var
Plants 2012, 1, 39-60; doi:10.3390/plants1020039 OPEN ACCESS plants ISSN 2223-7747 www.mdpi.com/journal/plants Article Photobiont Relationships and Phylogenetic History of Dermatocarpon luridum var. luridum and Related Dermatocarpon Species Kyle M. Fontaine 1, Andreas Beck 2, Elfie Stocker-Wörgötter 3 and Michele D. Piercey-Normore 1,* 1 Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, R3T 2N2, Canada; E-Mail: [email protected] 2 Botanische Staatssammlung München, Menzinger Strasse 67, D-80638 München, Germany; E-Mail: [email protected] 3 Department of Organismic Biology, Ecology and Diversity of Plants, University of Salzburg, Hellbrunner Strasse 34, A-5020 Salzburg, Austria; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: Michele.Piercey-Normore@ad. umanitoba.ca; Tel.: +1-204-474-9610; Fax: +1-204-474-7588. Received: 31 July 2012; in revised form: 11 September 2012 / Accepted: 25 September 2012 / Published: 10 October 2012 Abstract: Members of the genus Dermatocarpon are widespread throughout the Northern Hemisphere along the edge of lakes, rivers and streams, and are subject to abiotic conditions reflecting both aquatic and terrestrial environments. Little is known about the evolutionary relationships within the genus and between continents. Investigation of the photobiont(s) associated with sub-aquatic and terrestrial Dermatocarpon species may reveal habitat requirements of the photobiont and the ability for fungal species to share the same photobiont species under different habitat conditions. The focus of our study was to determine the relationship between Canadian and Austrian Dermatocarpon luridum var. luridum along with three additional sub-aquatic Dermatocarpon species, and to determine the species of photobionts that associate with D.