Pathogenic Leptospira: Advances in Understanding the Molecular Pathogenesis and Virulence
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1 Full Title: 12 Novel Clonal Groups of Leptospira Infecting Humans in Multiple
medRxiv preprint doi: https://doi.org/10.1101/2020.08.28.20177097; this version posted December 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license . 1 Full Title: 12 Novel Clonal Groups of Leptospira Infecting Humans in Multiple 2 Contrasting Epidemiological Contexts in Sri Lanka 3 4 Dinesha Jayasundara 1,2, Indika Senavirathna 1,3, Janith Warnasekara 1, Chandika Gamage 4, 5 Sisira Siribaddana5, Senanayake Abeysinghe Mudiyanselage Kularatne 6, Michael 6 Matthias7, Mariet JF8, Mathieu Picardeau8, Suneth Agampodi1,7, Joseph Vinetz7 1 7 Leptospirosis Research Laboratory, Department of Community Medicine, Faculty of 8 Medicine and Allied Sciences, Rajarata University of Sri Lanka 2 9 Department of Microbiology, Faculty of Medicine and Allied Sciences, Rajarata 10 University of Sri Lanka 3 11 Department of Biochemistry, Faculty of Medicine and Allied Sciences, Rajarata 12 University of Sri Lanka 4 13 Department of Microbiology, Faculty of Medicine, University of Peradeniya, Sri Lanka 14 5 Department of Medicine, Faculty of Medicine and Allied Sciences, Rajarata University of 15 Sri Lanka 16 6 Department of Medicine, Faculty of Medicine, University of Peradeniya, Sri Lanka 17 7 Yale University school of Medicine, New Haven, Connecticut, USA 18 8 Institut Pasteur, Biology of Spirochetes unit, Paris, France 19 1 NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. -
Leptospira and Leptospirosis
GLOBAL WATER PATHOGEN PROJECT PART THREE. SPECIFIC EXCRETED PATHOGENS: ENVIRONMENTAL AND EPIDEMIOLOGY ASPECTS LEPTOSPIRA AND LEPTOSPIROSIS Cyrille Goarant Institut Pasteur International Network Noumea, New Caledonia Gabriel Trueba Universidad San Francisco De Quito, Institute of Microbiology Quito, Ecuador Emilie Bierque Institut Pasteur International Network Noumea, New Caledonia Roman Thibeaux Institut Pasteur International Network Noumea, New Caledonia Benjamin Davis Virginia Tech Blacksburg, United States Alejandro de la Pena-Moctezuma Universidad Nacional Autonoma de Mexico Gustavo A. Madero, Mexico Copyright: This publication is available in Open Access under the Attribution-ShareAlike 3.0 IGO (CC-BY-SA 3.0 IGO) license (http://creativecommons.org/licenses/by-sa/3.0/igo). By using the content of this publication, the users accept to be bound by the terms of use of the UNESCO Open Access Repository (http://www.unesco.org/openaccess/terms-use-ccbysa-en). Disclaimer: The designations employed and the presentation of material throughout this publication do not imply the expression of any opinion whatsoever on the part of UNESCO concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The ideas and opinions expressed in this publication are those of the authors; they are not necessarily those of UNESCO and do not commit the Organization. Citation: Goarant, C., Trueba, G., Bierque, E., Thibeaux, R., Davis, B. and De la Peña Moctezuma. 2019. Leptospira and Leptospirosis. In: J.B. Rose and B. Jiménez-Cisneros, (eds) Global Water Pathogen Project. http://www.waterpathogens.org ( A. Pruden, N. Ashbolt and J. Miller (eds) Part 3 Bacteria) http://www.waterpathogens.org/book/leptospira-and-leptospriosis Michigan State University, E. -
Leptospirosis Importance Leptospirosis Is a Bacterial Zoonosis That Is Common Worldwide, Especially in Developing Countries
Leptospirosis Importance Leptospirosis is a bacterial zoonosis that is common worldwide, especially in developing countries. Organisms are shed in the urine of infected animals, including Weil’s Syndrome, rodents and domesticated animals, which may not show signs of disease. Humans Swamp Fever, Mud Fever, usually become ill after contact with infected urine, or through contact with water, Autumn Fever (Akiyami), soil or food that has been contaminated. Outbreaks have been associated with Swineherd’s Disease, floodwaters. In animals, the clinical signs of leptospirosis are often related to kidney Rice-Field Fever, disease, liver disease or reproductive dysfunction. In humans, many cases are mild or Cane-Cutter’s Fever, asymptomatic, and go unrecognized. In some patients, however, the illness may Hemorrhagic Jaundice, progress to kidney or liver failure, aseptic meningitis, life-threatening pulmonary Stuttgart Disease, hemorrhage and other syndromes. Canicola Fever, Etiology Redwater of Calves Leptospirosis is caused by various species of Leptospira, a spirochete in the family Leptospiraceae, order Spirochaetales. Some Leptospira are harmless saprophytes that reside in the environment, while others are pathogenic. The basic Last Updated: October 2013 unit of Leptospira taxonomy is the serovar. Serovars consist of closely related isolates based on serological reactions to the organism’s lipopolysaccharide. More than 250 pathogenic serovars, and at least 50 nonpathogenic serovars, have been identified. Two different systems are used to classify Leptospira isolates beyond the serovar. Before 1989, all pathogenic isolates belonged to the species L. interrogans and all nonpathogenic organisms were placed in L. biflexa. Leptospira serovars were also grouped, using serological methods, into 24 serogroups. The genus Leptospira has since been reclassified, using genetic techniques, into 21 species. -
University of Malaya Kuala Lumpur
EPIDEMIOLOGY OF HUMAN LEPTOSPIROSIS AND MOLECULAR CHARACTERIZATION OF Leptospira spp. ISOLATED FROM THE ENVIRONMENT AND ANIMAL HOSTS IN PENINSULAR BENACER DOUADI FACULTY OF SCIENCE UniversityUNIVERSITY OF of MALAYA Malaya KUALA LUMPUR 2017 EPIDEMIOLOGY OF HUMAN LEPTOSPIROSIS AND MOLECULAR CHARACTERIZATION OF Leptospira spp. ISOLATED FROM THE ENVIRONMENT AND ANIMAL HOSTS IN PENINSULAR MALAYSIA BENACER DOUADI THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES UniversityFACULTY OF SCIENCEof Malaya UNIVERSITY OF MALAYA KUALA LUMPUR 2017 ABSTRACT Leptospirosis is a globally important zoonotic disease caused by spirochetes from the genus Leptospira. Transmission to humans occurs either directly from exposure to contaminated urine or infected tissues, or indirectly via contact with contaminated soil or water. In Malaysia, leptospirosis is an important emerging zoonotic disease with dramatic increase of reported cases over the last decade. However, there is a paucity of data on the epidemiology and genetic characteristics of Leptopsira in Malaysia. The first objective of this study was to provide an epidemiological description of human leptospirosis cases over a 9-year period (2004–2012) and disease relationship with meteorological, geographical, and demographical information. An upward trend of leptospirosis cases were reported between 2004 to 2012 with a total of 12,325 cases recorded. Three hundred thirty-eight deaths were reported with an overall case fatality rate of 2.74%, with higher incidence in males (9696; 78.7%) compared with female patients (2629; 21.3%). The average incidence was highest amongst Malays (10.97 per 100,000 population), followed by Indians (7.95 per 100,000 population). -
International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of Meetings, 1 and 2 July 1994, Prague, Czech Republic
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Oct. 1995, p. 872-874 Vol. 45. No. 4 0020-77 13/95/$04.00+ 0 International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of Meetings, 1 and 2 July 1994, Prague, Czech Republic Minute 1. Call to order. The meeting was called to order by The subcommittee expressed general concern about the the Secretary, R. Marshall, at 0930 on 1 July 1994. The opening WHO’S lack of support. consisted of a welcoming introduction, following which R. Minute 9. Usefiklness of PCR-based strategies (MRSP and Marshall was unanimously asked to act as Chairman for the PCR} for genospecies delimitation and molecular typing. P. Pero- meeting in the absence, because of illness, of the chairman, K. lat presented a paper on the use of two PCR-based character- Yanagawa. W. Ellis accepted the job of meeting Secretary. ization methods for Leptospira reference strains and isolates. Following this meeting there were additional open meetings at Arbitrarily primed PCR generates simple and reproducible 1400 on 1 July 1994 and at 0900 on 2 July 1994. A closed fingerprints that can be used to identify leptospires at both the meeting was held at 1300 on 2 July 1994. genospecies and serovar levels and for molecular epidemiol- Minute 2. Record of attendance. The members present were ogy. Furthermore, a new PCR strategy, which is based on the R. Marshall (Secretary), B. Cacciapuoti, M. Cinco, H. Dikken, study of mapped restriction site polymorphisms (MRSP) in W. Ellis, S. Faine, E. Kmety, R. Johnson, N. Stallman, W. PCR-amplified rrs (16s rRNA) and M (23s rRNA) eubacterial Terpstra, and Y. -
Leptospira and Leptospirosis Cyrille Goarant, Gabriel Trueba, Emilie Bierque, Roman Thibeaux, Benjamin Davis, Alejandro De La Pena-Moctezuma
Leptospira and Leptospirosis Cyrille Goarant, Gabriel Trueba, Emilie Bierque, Roman Thibeaux, Benjamin Davis, Alejandro de la Pena-Moctezuma To cite this version: Cyrille Goarant, Gabriel Trueba, Emilie Bierque, Roman Thibeaux, Benjamin Davis, et al.. Lep- tospira and Leptospirosis. A. Pruden; N. Ashbolt; J. Miller. Water and Sanitation for the 21st Century: Health and Microbiological Aspects of Excreta and Wastewater Management (Global Water Pathogen Project), Michigan State University; UNESCO, 2019, Part 3: Specific Excreted Pathogens: Environmental and Epidemiology Aspects - Section 2: Bacteria, 10.14321/waterpathogens.26. hal- 03252857 HAL Id: hal-03252857 https://hal.archives-ouvertes.fr/hal-03252857 Submitted on 8 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - ShareAlike| 4.0 International License GLOBAL WATER PATHOGEN PROJECT PART THREE. SPECIFIC EXCRETED PATHOGENS: ENVIRONMENTAL AND EPIDEMIOLOGY ASPECTS LEPTOSPIRA AND LEPTOSPIROSIS Cyrille Goarant Institut Pasteur International Network Noumea, New Caledonia Gabriel Trueba Universidad San Francisco De Quito, Institute of Microbiology Quito, Ecuador Emilie Bierque Institut Pasteur International Network Noumea, New Caledonia Roman Thibeaux Institut Pasteur International Network Noumea, New Caledonia Benjamin Davis Virginia Tech Blacksburg, United States Alejandro de la Pena-Moctezuma Universidad Nacional Autonoma de Mexico Gustavo A. -
Leptospirosis
Fact sheet Leptospirosis is a worldwide bacterial disease that affects a wide range of mammalian species, has significant agricultural impacts and is a frequent a zoonotic disease in humans (Ellis 2015). Almost all mammal species can excrete or be carriers of the organism (Adler and de la Peña Moctezuma 2010). The most commonly identified carriers of the infectious organism in Australia are rodents and small marsupials, with domestic animals such as cattle, pigs, sheep, goats and dogs also recognised as sources of disease (Adler and de la Peña Moctezuma 2010). Evidence of infection with Leptospira spp. has been found in a wide range of Australian mammals (Ladds 2009). Leptospira spp. are motile spirochaete bacteria from the family Leptospiraceae in the order Spirochaetales. There are now over 20 recognised species consisting of over 300 antigenically distinct serovars worldwide, however further changes in taxonomy are expected. Closely related serovars are occasionally grouped into serogroups, which have proven useful for epidemiology. Accepted nomenclature dictates that genus and species are italicised, followed by the non-italicised, capitalised serovar (e.g. Leptospira interrogans serovar Icterohaemorrhagiae) (Levett 2015). Rodents are the maintenance hosts for most Leptospira serovars but many serovars are adapted to other wild or domestic mammal species. While each has a host preference, serovars are often capable of infecting other mammalian species, with variable resultant disease (Heath and Johnson 1994; Ellis 2015). Leptospira spp. are widespread globally (other than Antarctica). Theoretically, any serovar can occur in any area, but generally a limited number of serovars are endemic in any one region. Rates of incidental disease in animals are higher in tropical areas, particularly if ecological factors result in increased overlap between susceptible and reservoir species (Ellis 2015). -
The Characteristics of Ubiquitous and Unique Leptospira Strains from the Collection of Russian Centre for Leptospirosis
Hindawi Publishing Corporation BioMed Research International Volume 2014, Article ID 649034, 15 pages http://dx.doi.org/10.1155/2014/649034 Research Article The Characteristics of Ubiquitous and Unique Leptospira Strains from the Collection of Russian Centre for Leptospirosis Olga L. Voronina, Marina S. Kunda, Ekaterina I. Aksenova, Natalia N. Ryzhova, Andrey N. Semenov, Evgeny M. Petrov, Lubov V. Didenko, Vladimir G. Lunin, Yuliya V. Ananyina, and Alexandr L. Gintsburg N.F. Gamaleya Institute for Epidemiology and Microbiology, Ministry of Health of Russia, Gamaleya Street 18, Moscow 123098, Russia Correspondence should be addressed to Olga L. Voronina; [email protected] Received 22 May 2014; Revised 29 July 2014; Accepted 5 August 2014; Published 2 September 2014 Academic Editor: Vassily Lyubetsky Copyright © 2014 Olga L. Voronina et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. BackgroundandAim.Leptospira, the causal agent of leptospirosis, has been isolated from the environment, patients, and wide spectrum of animals in Russia. However, the genetic diversity of Leptospira in natural and anthropurgic foci was not clearly defined. Methods. The recent MLST scheme was used for the analysis of seven pathogenic species. 454 pyrosequencing technology was the base of the whole genome sequencing (WGS). Results. The most wide spread and prevalent Leptospira species in Russia were L. interrogans, L. kirschneri, and L. borgpetersenii.FiveSTs,commonforRussianstrains:37,17,199,110,and146,were identified as having a longtime and ubiquitous distribution in various geographic areas. Unexpected properties were revealed forthe environmental Leptospira strain Bairam-Ali. -
Analysis of Genes Encoding Outer Membrane Protein Of
Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk A thesis Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY by KARUKRITI KAUSHIK GHOSH Under the supervision of Dr. Manish Kumar Department of Biosciences and Bioengineering Indian Institute of Technology Guwahati Guwahati-781039, Assam, India. February, 2019 TH-2331_136106014 TH-2331_136106014 Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk by Karukriti Kaushik Ghosh IIT Guwahati, 2019 Doctoral Committee Dr. Manish Kumar (Department of Biosciences and Bioengineering) Supervisor Dr. Anil Mukund Limaye (Department of Biosciences and Bioengineering) Chairperson Dr. Sachin Kumar (Department of Biosciences and Bioengineering) Member Dr. Debasis Manna (Department of Chemistry) Member TH-2331_136106014 TH-2331_136106014 DEDICATION I dedicate this work to my grandparents and parents for their selfless sacrifices and belief in my abilities. They are my inspiration and pillars of strength. TH-2331_136106014 TH-2331_136106014 DECLARATION I hereby declare that the matter embodied in this thesis entitled “Analysis of Genes Encoding Outer Membrane Protein of Leptospira interrogans and Its Modulation Due to Host Factors: An Approach for Understanding Host-Pathogen Crosstalk” is the result of investigations carried out by me in the Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Assam, India under the supervision of Dr. Manish Kumar. In keeping with the general practice of reporting scientific observations, due acknowledgments have been made wherever the work of other investigators are referred. -
Bioinformática Desarrollo, Implementación Y Optimización De
Universidad de la Republica´ PEDECIBA - Bioinformatica´ Tesis de Maestr´ıa Desarrollo, implementaci´ony optimizaci´onde herramientas de gen´omicacomparativa para el g´enero Leptospira Ignacio Ferr´es Tutor Dr. Gregorio Iraola Co-tutor Dr. Hugo Naya 18 de marzo de 2019 (...) welcome to the machine. Where have you been? It's alright we know where you've been. You've been in the pipeline, filling in time. | Roger Waters Agradecimientos A la ANII, por apoyar mi investigaci´on. Al tribunal, Jos´e,Laura, y Alejandro, por sus valiosos aportes. A Hugo por permitirme realizar mis estudios de posgrado en la Unidad de Bio- inform´atica. A los compa~neros del Laboratorio de Gen´omicaMicrobiana, especialmente a Gre- gorio por guiarme en todo este proceso, valorar en todo momento mi esfuerzo, y permitirme ser parte de su equipo. A toda la Unidad de Bioinform´atica, en general, por el apoyo recibido siempre, el inmejorable y siempre c´alidoambiente laboral, y las instancias de formaci´onreci- bidas. A Cecilia, Leticia y Alejandro, por permitirme investigar con datos que iba ge- nerando su laboratorio. A los amigos, de la facultad y del liceo, que siempre estuvieron. A familia, siempre atr´as. Gracias. 2 Resumen La leptospirosis es una enfermedad zoon´onicacon alta prevalencia en pa´ısestropicales de bajos ingresos provocada por bacterias del g´ene- ro Leptospira. Gracias a los avances en secuenciaci´on,en lo ´ultimosa~nos las bases de datos gen´omicoshan crecido exponencialmente, y con ellas el n´umerode genomas secuenciados de cepas del g´enero,lo cual ha per- mitido un entendimiento m´asprofundo de este grupo de bacterias. -
The Magnitude and Diversity of Infectious Diseases
Chapter 1 The Magnitude and Diversity of Infectious Diseases “All interest in disease and death is only another expression of interest in life.” Thomas Mann THE IMPORTANCE OF INFECTIOUS DISEASES IN TERMS OF HUMAN MORTALITY According to the U.S. Census Bureau, on July 20, 2011, the USA population was 311 806 379, and the world population was 6 950 195 831 [2]. The U.S. Central Intelligence agency estimates that the USA crude death rate is 8.36 per 1000 and the world crude death rate is 8.12 per 1000 [3]. This translates to 2.6 million people dying in 2011 in the USA, and 56.4 million people dying worldwide. These numbers, calculated from authoritative sources, correlate surprisingly well with the widely used rule of thumb that 1% of the human population dies each year. How many of the world’s 56.4 million deaths can be attributed to infectious diseases? According to World Health Organization, in 1996, when the global death toll was 52 million, “Infectious diseases remain the world’s leading cause of death, accounting for at least 17 million (about 33%) of the 52 million people who die each year” [4]. Of course, only a small fraction of infections result in death, and it is impossible to determine the total incidence of infec- tious diseases that occur each year, for all organisms combined. Still, it is useful to consider some of the damage inflicted by just a few of the organisms that infect humans. Malaria infects 500 million people. About 2 million people die each year from malaria [4]. -
Leptospira and Leptospirosis
GLOBAL WATER PATHOGEN PROJECT PART THREE. SPECIFIC EXCRETED PATHOGENS: ENVIRONMENTAL AND EPIDEMIOLOGY ASPECTS LEPTOSPIRA AND LEPTOSPIROSIS Cyrille Goarant Institut Pasteur International Network Noumea, New Caledonia Gabriel Trueba Universidad San Francisco De Quito, Institute of Microbiology Quito, Ecuador Emilie Bierque Institut Pasteur International Network Noumea, New Caledonia Roman Thibeaux Institut Pasteur International Network Noumea, New Caledonia Benjamin Davis Virginia Tech Blacksburg, United States Alejandro de la Pena-Moctezuma Universidad Nacional Autonoma de Mexico Gustavo A. Madero, Mexico Copyright: This publication is available in Open Access under the Attribution-ShareAlike 3.0 IGO (CC-BY-SA 3.0 IGO) license (http://creativecommons.org/licenses/by-sa/3.0/igo). By using the content of this publication, the users accept to be bound by the terms of use of the UNESCO Open Access Repository (http://www.unesco.org/openaccess/terms-use-ccbysa-en). Disclaimer: The designations employed and the presentation of material throughout this publication do not imply the expression of any opinion whatsoever on the part of UNESCO concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The ideas and opinions expressed in this publication are those of the authors; they are not necessarily those of UNESCO and do not commit the Organization. Citation: Goarant, C., Trueba, G., Bierque, E., Thibeaux, R., Davis, B. and De la Peña Moctezuma. (2019). Leptospira and Leptospirosis. In: J.B. Rose and B. Jiménez-Cisneros, (eds) Water and Sanitation for the 21st Century: Health and Microbiological Aspects of Excreta and Wastewater Management (Global Water Pathogen Project).