The Role of Protein Arginine Methylation As Post-Translational Modification on Actin Cytoskeletal Components in Neuronal Structure and Function
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The Cross-Talk Between Methylation and Phosphorylation in Lymphoid-Specific Helicase Drives Cancer Stem-Like Properties
Signal Transduction and Targeted Therapy www.nature.com/sigtrans ARTICLE OPEN The cross-talk between methylation and phosphorylation in lymphoid-specific helicase drives cancer stem-like properties Na Liu1,2,3, Rui Yang1,2, Ying Shi1,2, Ling Chen1,2, Yating Liu1,2, Zuli Wang1,2, Shouping Liu1,2, Lianlian Ouyang4, Haiyan Wang1,2, Weiwei Lai1,2, Chao Mao1,2, Min Wang1,2, Yan Cheng5, Shuang Liu4, Xiang Wang6, Hu Zhou7, Ya Cao1,2, Desheng Xiao1 and Yongguang Tao1,2,6 Posttranslational modifications (PTMs) of proteins, including chromatin modifiers, play crucial roles in the dynamic alteration of various protein properties and functions including stem-cell properties. However, the roles of Lymphoid-specific helicase (LSH), a DNA methylation modifier, in modulating stem-like properties in cancer are still not clearly clarified. Therefore, exploring PTMs modulation of LSH activity will be of great significance to further understand the function and activity of LSH. Here, we demonstrate that LSH is capable to undergo PTMs, including methylation and phosphorylation. The arginine methyltransferase PRMT5 can methylate LSH at R309 residue, meanwhile, LSH could as well be phosphorylated by MAPK1 kinase at S503 residue. We further show that the accumulation of phosphorylation of LSH at S503 site exhibits downregulation of LSH methylation at R309 residue, which eventually promoting stem-like properties in lung cancer. Whereas, phosphorylation-deficient LSH S503A mutant promotes the accumulation of LSH methylation at R309 residue and attenuates stem-like properties, indicating the critical roles of LSH PTMs in modulating stem-like properties. Thus, our study highlights the importance of the crosstalk between LSH PTMs in determining its activity and function in lung cancer stem-cell maintenance. -
Dendritic Spine Remodeling Accompanies Alzheimer's Disease
Neurobiology of Aging 73 (2019) 92e103 Contents lists available at ScienceDirect Neurobiology of Aging journal homepage: www.elsevier.com/locate/neuaging Dendritic spine remodeling accompanies Alzheimer’s disease pathology and genetic susceptibility in cognitively normal aging Benjamin D. Boros a,b, Kelsey M. Greathouse a,b, Marla Gearing c, Jeremy H. Herskowitz a,b,* a Center for Neurodegeneration and Experimental Therapeutics, University of Alabama at Birmingham, Birmingham, AL, USA b Department of Neurology, University of Alabama at Birmingham, Birmingham, AL, USA c Department of Pathology, Department of Neurology, Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia article info abstract Article history: Subtle alterations in dendritic spine morphology can induce marked effects on connectivity patterns of Received 1 May 2018 neuronal circuits and subsequent cognitive behavior. Past studies of rodent and nonhuman primate aging Received in revised form 5 September 2018 revealed reductions in spine density with concomitant alterations in spine morphology among pyramidal Accepted 6 September 2018 neurons in the prefrontal cortex. In this report, we visualized and digitally reconstructed the three- Available online 21 September 2018 dimensional morphology of dendritic spines from the dorsolateral prefrontal cortex in cognitively normal individuals aged 40e94 years. Linear models defined relationships between spines and age, MinieMental Keywords: ε ’ ’ State Examination, apolipoprotein E (APOE) 4 allele status, and Alzheimer s disease (AD) pathology. Alzheimer s disease fi Aging Similar to ndings in other mammals, spine density correlated negatively with human aging. Reduced spine e Dendritic spine head diameter associated with higher Mini Mental State Examination scores. Individuals harboring an APOE APOE ε4 allele displayed greater numbers of dendritic filopodia and structural alterations in thin spines. -
Distinct Contributions of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors
Downloaded from genome.cshlp.org on October 8, 2021 - Published by Cold Spring Harbor Laboratory Press Research Distinct contributions of DNA methylation and histone acetylation to the genomic occupancy of transcription factors Martin Cusack,1 Hamish W. King,2 Paolo Spingardi,1 Benedikt M. Kessler,3 Robert J. Klose,2 and Skirmantas Kriaucionis1 1Ludwig Institute for Cancer Research, University of Oxford, Oxford, OX3 7DQ, United Kingdom; 2Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, United Kingdom; 3Target Discovery Institute, University of Oxford, Oxford, OX3 7FZ, United Kingdom Epigenetic modifications on chromatin play important roles in regulating gene expression. Although chromatin states are often governed by multilayered structure, how individual pathways contribute to gene expression remains poorly under- stood. For example, DNA methylation is known to regulate transcription factor binding but also to recruit methyl-CpG binding proteins that affect chromatin structure through the activity of histone deacetylase complexes (HDACs). Both of these mechanisms can potentially affect gene expression, but the importance of each, and whether these activities are inte- grated to achieve appropriate gene regulation, remains largely unknown. To address this important question, we measured gene expression, chromatin accessibility, and transcription factor occupancy in wild-type or DNA methylation-deficient mouse embryonic stem cells following HDAC inhibition. We observe widespread increases in chromatin accessibility at ret- rotransposons when HDACs are inhibited, and this is magnified when cells also lack DNA methylation. A subset of these elements has elevated binding of the YY1 and GABPA transcription factors and increased expression. The pronounced ad- ditive effect of HDAC inhibition in DNA methylation–deficient cells demonstrates that DNA methylation and histone deacetylation act largely independently to suppress transcription factor binding and gene expression. -
Small Nucleolar Rnas Determine Resistance to Doxorubicin in Human Osteosarcoma
International Journal of Molecular Sciences Article Small Nucleolar RNAs Determine Resistance to Doxorubicin in Human Osteosarcoma Martina Godel 1, Deborah Morena 1, Preeta Ananthanarayanan 1, Ilaria Buondonno 1, Giulio Ferrero 2,3 , Claudia M. Hattinger 4, Federica Di Nicolantonio 1,5 , Massimo Serra 4 , 1 2 1, , 1, , Riccardo Taulli , Francesca Cordero , Chiara Riganti * y and Joanna Kopecka * y 1 Department of Oncology, University of Torino, 1026 Torino, Italy; [email protected] (M.G.); [email protected] (D.M.); [email protected] (P.A.); [email protected] (I.B.); [email protected] (F.D.N.); [email protected] (R.T.) 2 Department of Computer Science, University of Torino, 10149 Torino, Italy; [email protected] (G.F.); [email protected] (F.C.) 3 Department of Clinical and Biological Sciences, University of Torino, 10043 Orbassano, Italy 4 Laboratory of Experimental Oncology, Pharmacogenomics and Pharmacogenetics Research Unit, IRCCS Istituto Ortopedico Rizzoli, 40136 Bologna, Italy; [email protected] (C.M.H.); [email protected] (M.S.) 5 Candiolo Cancer Institute, FPO–IRCCS, 10060 Candiolo, Italy * Correspondence: [email protected] (C.R.); [email protected] (J.K.); Tel.: +39-0116705857 (C.R.); +39-0116705849 (J.K.) These authors equally contributed to this work. y Received: 31 May 2020; Accepted: 21 June 2020; Published: 24 June 2020 Abstract: Doxorubicin (Dox) is one of the most important first-line drugs used in osteosarcoma therapy. Multiple and not fully clarified mechanisms, however, determine resistance to Dox. With the aim of identifying new markers associated with Dox-resistance, we found a global up-regulation of small nucleolar RNAs (snoRNAs) in human Dox-resistant osteosarcoma cells. -
Ubiquitination/Deubiquitination and Acetylation/Deacetylation
Acta Pharmacologica Sinica (2011) 32: 139–140 npg © 2011 CPS and SIMM All rights reserved 1671-4083/11 $32.00 www.nature.com/aps Research Highlight Ubiquitination/deubiquitination and acetylation/ deacetylation: Making DNMT1 stability more coordinated Qi HONG, Zhi-ming SHAO* Acta Pharmacologica Sinica (2011) 32: 139–140; doi: 10.1038/aps.2011.3 n mammals, DNA methylation plays important role in human cancers[7, 8]. abundance of DNMT1 mutant lacking Ia crucial role in the regulation of Ubiquitinproteasome pathway is sig the HAUSP interaction domain, but not gene expression, telomere length, cell nificant in the stability of DNMT1[8], but the fulllength protein. These results differentiation, X chromosome inactiva ubiquitinmediated protein degradation show the coordination between ubiquit tion, genomic imprinting and tumori can be enhanced or attenuated by some ination of DNMT1 by UHRF1 and deu genesis[1]. DNA methylation patterns modifications like acetylation/deacety biquitination by HAUSP. Furthermore, are established de novo by DNA meth lation, protein methylation/demethyla they found that knockdown of HDAC1 yltransferases (DNMTs) 3a and 3b, tion, phosphorylation and Snitrosy increased DNMT1 acetylation, and whereas DNMT1 maintains the parent lation[9–11]. Estève et al demonstrated reduced DNMT1 abundance. Addition specific methylation from parental cells that SET7mediated lysine methy lation ally, acetyltransferase Tip60 which was to their progeny[2]. After DNA replica of DNMT1 decreased DNMT1 level found to acetylate DNMT1 promoted its tion, the new DNA strand is unmethy by ubiquitinmediated degradation[10]. ubiquitination, then destabilized it. At lated. Thus with the mother methylated Furthermore, an early study[12] showed last, Tip60 and HAUSP were found to strand, the DNA is hemimethylated. -
Role of STAT1 in the Resistance of HBV to IFN‑Α
EXPERIMENTAL AND THERAPEUTIC MEDICINE 21: 550, 2021 Role of STAT1 in the resistance of HBV to IFN‑α BINGFA XU1, BO TANG2 and JIAJIA WEI3 1Department of Pharmacy, The Third Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230061; 2Department of Pharmacy, Huainan First People's Hospital, Huainan, Anhui 232007; 3Department of Pharmacy, The First People's Hospital of Changzhou, Changzhou, Jiangsu 213000, P.R. China Received February 26, 2020; Accepted February 17, 2021 DOI: 10.3892/etm.2021.9982 Abstract. The objective of the present study was to explore of the receptor. This subsequently changes the intracellular the mechanism of hepatitis B virus (HBV) resistance to inter‑ conformation of the receptor and activates janus kinase (JAK). feron (IFN), and the role of signal transducer and activator JAK phosphorylates signal transducer and activator of tran‑ of transcription 1 (STAT1). HepG2.2.15 cells were stimulated scription (STAT) in the cytoplasm, which then forms STAT1/2 with a long‑term (6‑24 weeks) low‑dose interferon (IFN)α‑2b heterodimers and is transported to the nucleus to interact with (10‑70 IU/ml), so as to construct and screen a HepG2.2.15 IFN‑stimulated response elements (ISRE). This initiates the cell model resistant to IFNα‑2b. The changes of STAT1 and transcription of IFN‑stimulated genes (ISGs), resulting in other proteins in the JAK‑STAT signaling pathway, before and proteins which exert direct or indirect antiviral effects (8), after drug resistance, were compared. The phosphorylation of such as double‑stranded RNA‑dependent protease (Protein STAT1 in HepG2.2.15 cells resistant to IFNα‑2b was signifi‑ Kinase r; RKR) and 2',5'‑oligoadenylate synthetase 1 (OAS1), cantly decreased, and the expression level of 2',5'‑oligoadenylate anti‑myxovirus protein (myxovirus resistance protein A; synthetase 1 was downregulated. -
1519038862M28translationand
Paper No. : 15 Molecular Cell Biology Module : 28 Translation and Post-translation Modifications in Eukaryotes Development Team Principal Investigator : Prof. Neeta Sehgal Department of Zoology, University of Delhi Co-Principal Investigator : Prof. D.K. Singh Department of Zoology, University of Delhi Paper Coordinator : Prof. Kuldeep K. Sharma Department of Zoology, University of Jammu Content Writer : Dr. Renu Solanki, Deen Dayal Upadhyaya College Dr. Sudhida Gautam, Hansraj College, University of Delhi Mr. Kiran K. Salam, Hindu College, University of Delhi Content Reviewer : Prof. Rup Lal Department of Zoology, University of Delhi 1 Molecular Genetics ZOOLOGY Translation and Post-translation Modifications in Eukaryotes Description of Module Subject Name ZOOLOGY Paper Name Molecular Cell Biology; Zool 015 Module Name/Title Cell regulatory mechanisms Module Id M28: Translation and Post-translation Modifications in Eukaryotes Keywords Genome, Proteome diversity, post-translational modifications, glycosylation, phosphorylation, methylation Contents 1. Learning Objectives 2. Introduction 3. Purpose of post translational modifications 4. Post translational modifications 4.1. Phosphorylation, the addition of a phosphate group 4.2. Methylation, the addition of a methyl group 4.3. Glycosylation, the addition of sugar groups 4.4. Disulfide bonds, the formation of covalent bonds between 2 cysteine amino acids 4.5. Proteolysis/ Proteolytic Cleavage 4.6. Subunit binding to form a multisubunit protein 4.7. S-nitrosylation 4.8. Lipidation 4.9. Acetylation 4.10. Ubiquitylation 4.11. SUMOlytion 4.12. Vitamin C-Dependent Modifications 4.13. Vitamin K-Dependent Modifications 4.14. Selenoproteins 4.15. Myristoylation 5. Chaperones: Role in PTM and mechanism 6. Role of PTMs in diseases 7. Detecting and Quantifying Post-Translational Modifications 8. -
PRMT5-CATALYZED ARGININE METHYLATION of NF-Κb P65 IN
PRMT5-CATALYZED ARGININE METHYLATION OF NF-κB p65 IN THE ENDOTHELIAL CELL INDUCTION OF PRO-INFLAMMATORY CHEMOKINES by DANIEL PELLERIN HARRIS Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: Paul E. DiCorleto, Ph.D. Department of Physiology and Biophysics CASE WESTERN RESERVE UNIVERSITY January, 2016 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Daniel P. Harris candidate for the Doctor of Philosophy degree *. Thomas N. Nosek, Ph.D., Committee Chair Paul E. DiCorleto, Ph.D. Cathleen R. Carlin, Ph.D. George R. Dubyak, Ph.D. Paul L. Fox, Ph.D. Mukesh K. Jain, M.D. July 27th, 2015 *We also certify that written approval has been obtained for any proprietary material contained therein. iii DEDICATION This dissertation is dedicated to my great-grandparents, Mark and Madeline Pellerin, and my parents Steve and Madeline Harris, for showing me how to live with grace and kindness. i TABLE OF CONTENTS List of Tables ....................................................................................................... 4 List of Figures ...................................................................................................... 5 Acknowledgements ............................................................................................ 6 List of Abbreviations ......................................................................................... 11 Abstract ............................................................................................................. -
METALEARNING, NEUROMODULATION and EMOTION Papers and Presentations 【Basic Concepts】 Doya, K
METALEARNING, NEUROMODULATION AND EMOTION Papers and Presentations 【Basic Concepts】 Doya, K. (2002). Metalearning and Neuromodulation. Neural Networks, 15(4). Doya, K. (2000). Metalearning, neuromodulation, and emotion. In G. Hatano, N. Okada and H. Tanabe (Eds.), Affective Minds, pp. 101-104. Elsevier Science B. V. Doya, K. (2000). Possible roles of neuromodulators in the regulation of learning processes. 30th Annual Meeting, Society for Neuroscience. 【System Integration Group】 1999 Doya, K. (1999). Metalearning, neuromodulation and emotion. The 13th Toyota Conference on Affective Minds, 46-47. 2000 Bapi, R. S., Graydon, F. X.,Doya, K. (2000). Time course of learning of motor sequence representation. 30th Annual Meeting, Society for Neuroscience, 26, 707. Doya, K. (2000). Metalearning, Neuromodulation and Emotion. Humanoid Challenge, JST Inter-field Exchange Forum, 87-88. Doya, K. (2000). Possible roles of neuromodulators in the regulation of learning processes. 30th Annual Meeting, Society for Neuroscience, 26, 2103. Doya, K. (2000). A possible role of serotonin in regulating the time scale of reward prediction. Serotonin: From the Molecule to the Clinic, 89. Doya, K. (2000). Metalearning, neuromodulation, and emotion. G. Hatanao, et al. (eds) Affective Minds, Elsevier Science, B.V., 101-104. Doya, K. (2000). Complementary roles of basal ganglia and cerebellum in learning and motor control. Current Opinion in Neurobiology, 10(6), 732-739. Doya, K., Katagiri, K., Wolpert, D. M., Kawato, M. (2000). Recognition and imitation of movement paterns by a multiple predictor-controller architecture. Technical Report of IEICE, TL2000(11), 33-40. Doya, K., Samejima, K., Katagiri, K., Kawato, M. (2000). Multiple model-based reinforcement learning. Kawato Dynamic Brain Project Technical Report, KDB-TR-08, 1-20. -
From 1957 to Nowadays: a Brief History of Epigenetics
International Journal of Molecular Sciences Review From 1957 to Nowadays: A Brief History of Epigenetics Paul Peixoto 1,2, Pierre-François Cartron 3,4,5,6,7,8, Aurélien A. Serandour 3,4,6,7,8 and Eric Hervouet 1,2,9,* 1 Univ. Bourgogne Franche-Comté, INSERM, EFS BFC, UMR1098, Interactions Hôte-Greffon-Tumeur/Ingénierie Cellulaire et Génique, F-25000 Besançon, France; [email protected] 2 EPIGENEXP Platform, Univ. Bourgogne Franche-Comté, F-25000 Besançon, France 3 CRCINA, INSERM, Université de Nantes, 44000 Nantes, France; [email protected] (P.-F.C.); [email protected] (A.A.S.) 4 Equipe Apoptose et Progression Tumorale, LaBCT, Institut de Cancérologie de l’Ouest, 44805 Saint Herblain, France 5 Cancéropole Grand-Ouest, Réseau Niches et Epigénétique des Tumeurs (NET), 44000 Nantes, France 6 EpiSAVMEN Network (Région Pays de la Loire), 44000 Nantes, France 7 LabEX IGO, Université de Nantes, 44000 Nantes, France 8 Ecole Centrale Nantes, 44300 Nantes, France 9 DImaCell Platform, Univ. Bourgogne Franche-Comté, F-25000 Besançon, France * Correspondence: [email protected] Received: 9 September 2020; Accepted: 13 October 2020; Published: 14 October 2020 Abstract: Due to the spectacular number of studies focusing on epigenetics in the last few decades, and particularly for the last few years, the availability of a chronology of epigenetics appears essential. Indeed, our review places epigenetic events and the identification of the main epigenetic writers, readers and erasers on a historic scale. This review helps to understand the increasing knowledge in molecular and cellular biology, the development of new biochemical techniques and advances in epigenetics and, more importantly, the roles played by epigenetics in many physiological and pathological situations. -
Transcriptional Regulation by Histone Ubiquitination and Deubiquitination
Downloaded from genesdev.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press PERSPECTIVE Transcriptional regulation by histone ubiquitination and deubiquitination Yi Zhang1 Department of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, North Carolina 27599, USA Ubiquitin (Ub) is a 76-amino acid protein that is ubiqui- The fact that histone ubiquitination occurs in the largely tously distributed and highly conserved throughout eu- monoubiquitinated form and is not linked to degrada- karyotic organisms. Whereas the extreme C-terminal tion, in combination with the lack of information regard- four amino acids are in a random coil, its N-terminal 72 ing the responsible enzymes, prevented us from under- amino acids have a tightly folded globular structure (Vi- standing the functional significance of this modification. jay-Kumar et al. 1987; Fig. 1A). Since its discovery ∼28 Recent identification of the E2 and E3 proteins involved years ago (Goldknopf et al. 1975), a variety of cellular in H2B ubiquitination (Robzyk et al. 2000; Hwang et al. processes including protein degradation, stress response, 2003; Wood et al. 2003a) and the discovery of cross-talk cell-cycle regulation, protein trafficking, endocytosis sig- between histone methylation and ubiquitination (Dover naling, and transcriptional regulation have been linked et al. 2002; Sun and Allis 2002) have set the stage for to this molecule (Pickart 2001). Ubiquitylation is pro- functional analysis of histone ubiquitination. In a timely posed to serve as a signaling module, and the informa- paper published in the previous issue of Genes & Devel- tion transmitted by this tag may depend on the nature of opment, Shelley Berger and colleagues (Henry et al. -
Bidirectional Influence of Sodium Channel Activation on NMDA
Bidirectional influence of sodium channel activation on NMDA receptor–dependent cerebrocortical neuron structural plasticity Joju Georgea, Daniel G. Badenb, William H. Gerwickc, and Thomas F. Murraya,1 aDepartment of Pharmacology, Creighton University School of Medicine, Omaha, NE 68178; bCenter for Marine Science, University of North Carolina, Wilmington, NC 28409; and cCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093 Edited by William A. Catterall, University of Washington School of Medicine, Seattle, WA, and approved October 16, 2012 (received for review July 31, 2012) Neuronal activity regulates brain development and synaptic plastic- NMDA receptors (NMDARs) and downstream signaling path- ity through N-methyl-D-aspartate receptors (NMDARs) and calcium- ways (9, 10). Previous studies have indicated that changes in in- + + dependent signaling pathways. Intracellular sodium ([Na ]i)also tracellular sodium concentration ([Na ]i) produced in soma and + exerts a regulatory influence on NMDAR channel activity, and [Na ]i dendrites as a result of neuronal activity may play a role in ac- may, therefore, function as a signaling molecule. In an attempt to tivity-dependent synaptic plasticity. Synaptic stimulation causes fl + mimic the in uence of neuronal activity on synaptic plasticity, we [Na ]i increments of 10 mM in dendrites and of up to 35–40 mM used brevetoxin-2 (PbTx-2), a voltage-gated sodium channel (VGSC) in dendritic spines (11). In hippocampal neurons, intracellular fi + + gating modi er, to manipulate [Na ]i in cerebrocortical neurons. [Na ] increments greater than 5–10 mM have been demonstrated The acute application of PbTx-2 produced concentration-dependent to increase NMDAR-mediated whole-cell currents and single- + 2+ increments in both intracellular [Na ] and [Ca ].