Changes in the Composition and Structure of Glycosaminoglycans in the Human Placenta During Development
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Emerging Views of Heparan Sulfate Glycosaminoglycan Structure
chain contains a b-D-glucosamine linked to an uronic acid, which can be one of two C5 epimers, either a-L-iduronic or b-D-glucuronic acid. Other than the C5 Emerging Views of Heparan Sulfate position of the uronic acid, HLGAGs Glycosaminoglycan Structure/Activity vary in their chain length, that is, the number of disaccharide repeat units, and Relationships Modulating Dynamic degree of sulfation and acetylation of each disaccharide unit. O-sulfation of the Biological Functions disaccharide repeat can occur at the 2-O Zachary Shriver, Dongfang Liu, and Ram Sasisekharan* position of the uronic acid and the 6-O and 3-O positions of the glucosamine. Thus, for a given disaccharide unit within an HSGAG structure, each site is Heparan sulfate glycosaminoglycans (HSGAGs) are an important subset either sulfated or unsubstituted, creat- of complex polysaccharides that represent the third major class of biopoly- ing eight possible combinations. In ad- mer, along with polynucleic acids and polypeptides. However, the impor- dition, as mentioned above, there are two possibilities for the uronic acid com- tance of HSGAGs in biological processes is underappreciated because of a ponent of each disaccharide unit, that lack of effective molecular tools to correlate specific structures with func- is, either iduronic acid or glucuronic tions. Only recently have significant strides been made in understanding acid, giving rise to a total of 16 different the steps of HSGAG biosynthesis that lead to the formation of unique possible disaccharide combinations. Fi- nally, the N-position of the glucosamine structures of functional importance. Such advances now create possibili- can be sulfated, acetylated, or unsubsti- ties for intervening in numerous clinical situations, creating much-needed tuted (three possible states). -
Surfen, a Small Molecule Antagonist of Heparan Sulfate
Surfen, a small molecule antagonist of heparan sulfate Manuela Schuksz*†, Mark M. Fuster‡, Jillian R. Brown§, Brett E. Crawford§, David P. Ditto¶, Roger Lawrence*, Charles A. Glass§, Lianchun Wang*, Yitzhak Torʈ, and Jeffrey D. Esko*,** *Department of Cellular and Molecular Medicine, Glycobiology Research and Training Center, †Biomedical Sciences Graduate Program, ‡Department of Medicine, Division of Pulmonary and Critical Care Medicine and Veteran’s Administration San Diego Medical Center, ¶Moores Cancer Center, and ʈDepartment of Chemistry and Biochemistry, University of California at San Diego, La Jolla, CA 92093; and §Zacharon Pharmaceuticals, Inc, 505 Coast Blvd, South, La Jolla, CA 92037 Communicated by Carolyn R. Bertozzi, University of California, Berkeley, CA, June 18, 2008 (received for review May 26, 2007) In a search for small molecule antagonists of heparan sulfate, Surfen (bis-2-methyl-4-amino-quinolyl-6-carbamide) was first we examined the activity of bis-2-methyl-4-amino-quinolyl-6- described in 1938 as an excipient for the production of depot carbamide, also known as surfen. Fluorescence-based titrations insulin (16). Subsequent studies have shown that surfen can indicated that surfen bound to glycosaminoglycans, and the extent block C5a receptor binding (17) and lethal factor (LF) produced of binding increased according to charge density in the order by anthrax (18). It was also reported to have modest heparin- heparin > dermatan sulfate > heparan sulfate > chondroitin neutralizing effects in an oral feeding experiments in rats (19), sulfate. All charged groups in heparin (N-sulfates, O-sulfates, and but to our knowledge, no further studies involving heparin have carboxyl groups) contributed to binding, consistent with the idea been conducted, and its effects on HS are completely unknown. -
Dermatan Sulfate Composition
Europäisches Patentamt *EP000671414B1* (19) European Patent Office Office européen des brevets (11) EP 0 671 414 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.7: C08B 37/00, A61K 31/715 of the grant of the patent: 02.01.2002 Bulletin 2002/01 (86) International application number: PCT/JP94/01643 (21) Application number: 94927827.9 (87) International publication number: (22) Date of filing: 30.09.1994 WO 95/09188 (06.04.1995 Gazette 1995/15) (54) DERMATAN SULFATE COMPOSITION AS ANTITHROMBOTIC DERMATANSULFATEZUSAMMENSETZUNG ALS ANTITHROMOTISCHES MITTEL COMPOSITION DE DERMATANE SULFATE UTILISE COMME ANTITHROMBOTIQUE (84) Designated Contracting States: • YOSHIDA, Keiichi AT BE CH DE DK ES FR GB IT LI NL PT SE Tokyo 189 (JP) (30) Priority: 30.09.1993 JP 26975893 (74) Representative: Davies, Jonathan Mark Reddie & Grose 16 Theobalds Road (43) Date of publication of application: London WC1X 8PL (GB) 13.09.1995 Bulletin 1995/37 (56) References cited: (60) Divisional application: EP-A- 0 112 122 EP-A- 0 199 033 01201321.5 / 1 125 977 EP-A- 0 238 994 WO-A-93/05074 JP-A- 59 138 202 JP-B- 2 100 241 (73) Proprietor: SEIKAGAKU KOGYO KABUSHIKI JP-B- 6 009 042 KAISHA Tokyo 103 (JP) • CARBOHYDRATE RESEARCH , vol. 131, no. 2, 1984 NL, pages 301-314, K. NAGASAWA ET AL. (72) Inventors: ’The structure of rooster-comb dermatan • TAKADA, Akikazu sulfate. Characterization and quantitative Shizuoka 431-31 (JP) determination of copolymeric, isomeric tetra- • ONAYA, Junichi and hexa-saccharides’ Higashiyamato-shi Tokyo 207 (JP) • ARAI, Mikio Remarks: Higashiyamato-shi Tokyo 207 (JP) The file contains technical information submitted • MIYAUCHI, Satoshi after the application was filed and not included in this Tokyo 208 (JP) specification • KYOGASHIMA, Mamoru Tokyo 207 (JP) Note: Within nine months from the publication of the mention of the grant of the European patent, any person may give notice to the European Patent Office of opposition to the European patent granted. -
Glycosaminoglycan Therapy for Long-Term Diabetic Complications?
Diabetologia (1998) 41: 975±979 Ó Springer-Verlag 1998 For debate Glycosaminoglycan therapy for long-term diabetic complications? G.Gambaro1, J.Skrha2, A. Ceriello3 1 Institute of Internal Medicine, Division of Nephrology, University of Padua, Italy 2 3rd Department of Internal Medicine, Charles University, Prague, Czech Republic 3 Department of Internal Medicine, University of Udine, Italy Long-term complications are the most important and an aminosugar (glucosamine or galattosamine) cause of mortality of diabetic patiens in western [5]. These molecules are widely distributed in the countries and diabetic nephropathy has emerged as body and prominent in extracellular matrices [5]. a major determinant of end-stage renal failure [1]. Three major classes of GAGs have been de- Moreover, patients with diabetes mellitus have a scribed: a predominant large chondroitin sulphate, a high probability of developing acute cardiovascular small dermatan sulphate and a polydisperse heparan disease, in particular myocardial infarction and cere- sulphate (HS) [5]. GAGs are vital in maintaining the brovascular stroke which are the cause of death in structural integrity of the tissue and studies have nearly 80% of this population [2]. Although data shown that basement membranes contain HS in the from the Diabetes Control and Complications Trial form of a proteoglycan unique to that tissue [5]. HS establish that hyperglycaemia has a central role in di- forms anionic sites in this matrix and are thought to abetic complications, strict metabolic control can be restrict the passage of proteins through the basement difficult to achieve. The search for new and ancillary membrane [5]. approaches to diabetic complications is therefore warranted and understanding the distal pathway of glucose toxicity assumes clinical and therapeutical GAG metabolism and diabetes mellitus significance. -
Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20®
Review INES SLIM (MD)1, HOUDA TAJOURI (MD)1, DENIS BARRITAULT (PHD)2,3, MAHA KACEM NJAH (MD)1, KOUSSAY ACH (MD)1, MOLKA CHADLI CHAIEB MD1, LARBI CHAIEB (MD)1 1. Endocrinology and Diabetology Department, Farhat Hached University Hospital, Ibn Jazzar Street, 4000, Sousse, Tunisia. 2. OTR3, 4 Rue Française, 75001 Paris, France. 3. Laboratoire CRRET , CNRS UMR 7149 Sciences Faculty, Paris Est Créteil University, 94000 Créteil, France. Matrix Protection Therapy in Diabetic Foot Ulcers: Pilot Study of CACIPLIQ20® Abstract We evaluated whether matrix protection therapy by CACIPLIQ20® promotes healing of chronic lower extremity wounds in diabetic patients. Ten diabetic patients with non-infected chronic skin wounds and with no evidence of healing were inclu- ded. CACIPLIQ20® was applied topically twice a week for 5 minutes for up to 10 weeks. Wound surface area was measured at baseline then weekly during treatment. Wound closure, defined as complete reepithelialization, was the primary end- point. Mean wound surface area decreased by 25% within the first week (p=0.021 vs. baseline) and by 47% after 4 weeks (p=0.001 vs. baseline). After 10 weeks, the wound was closed in 6 of the 10 patients and decreased over 80% in the other patients. Subsequently, the none healed patients returned to standard care. Six months later, complete wound healing was noted in one additional patient and no further change in the remaining 3 patients. Two patients were again treated with CACI- PLIQ20® for one month: one healed, the other improved again by 50%. Nine months later, closed ulcers did not re-open. -
Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics
International Journal of Molecular Sciences Article Constructing 3-Dimensional Atomic-Resolution Models of Nonsulfated Glycosaminoglycans with Arbitrary Lengths Using Conformations from Molecular Dynamics Elizabeth K. Whitmore 1,2 , Devon Martin 1,2 and Olgun Guvench 1,2,* 1 Department of Pharmaceutical Sciences and Administration, University of New England School of Pharmacy, 716 Stevens Avenue, Portland, ME 04103, USA; [email protected] (E.K.W.); [email protected] (D.M.) 2 Graduate School of Biomedical Science and Engineering, University of Maine, 5775 Stodder Hall, Orono, ME 04469, USA * Correspondence: [email protected]; Tel.: +1-207-221-4171 Received: 10 September 2020; Accepted: 15 October 2020; Published: 18 October 2020 Abstract: Glycosaminoglycans (GAGs) are the linear carbohydrate components of proteoglycans (PGs) and are key mediators in the bioactivity of PGs in animal tissue. GAGs are heterogeneous, conformationally complex, and polydisperse, containing up to 200 monosaccharide units. These complexities make studying GAG conformation a challenge for existing experimental and computational methods. We previously described an algorithm we developed that applies conformational parameters (i.e., all bond lengths, bond angles, and dihedral angles) from molecular dynamics (MD) simulations of nonsulfated chondroitin GAG 20-mers to construct 3-D atomic-resolution models of nonsulfated chondroitin GAGs of arbitrary length. In the current study, we applied our algorithm to other GAGs, including hyaluronan and nonsulfated forms of -
Demystifying Heparan Sulfate–Protein Interactions
UC San Diego UC San Diego Previously Published Works Title Demystifying heparan sulfate-protein interactions. Permalink https://escholarship.org/uc/item/0wj6876w Journal Annual review of biochemistry, 83(1) ISSN 0066-4154 Authors Xu, Ding Esko, Jeffrey D Publication Date 2014 DOI 10.1146/annurev-biochem-060713-035314 Peer reviewed eScholarship.org Powered by the California Digital Library University of California BI83CH06-Esko ARI 3 May 2014 10:35 Demystifying Heparan Sulfate–Protein Interactions Ding Xu and Jeffrey D. Esko Department of Cellular and Molecular Medicine, Glycobiology Research and Training Center, University of California, San Diego, La Jolla, California 92093; email: [email protected], [email protected] Annu. Rev. Biochem. 2014. 83:129–57 Keywords First published online as a Review in Advance on heparin-binding protein, glycosaminoglycan, proteoglycan, March 6, 2014 glycan–protein interaction, heparan sulfate–binding domain, The Annual Review of Biochemistry is online at oligomerization biochem.annualreviews.org Annu. Rev. Biochem. 2014.83:129-157. Downloaded from www.annualreviews.org This article’s doi: Abstract 10.1146/annurev-biochem-060713-035314 Access provided by University of California - San Diego on 06/23/20. For personal use only. Numerous proteins, including cytokines and chemokines, enzymes and Copyright c 2014 by Annual Reviews. enzyme inhibitors, extracellular matrix proteins, and membrane recep- All rights reserved tors, bind heparin. Although they are traditionally classified as heparin- binding proteins, under normal physiological conditions these proteins actually interact with the heparan sulfate chains of one or more mem- brane or extracellular proteoglycans. Thus, they are more appropriately classified as heparan sulfate–binding proteins (HSBPs). -
Glycosaminoglycans As Active Signaling Components of the Extracellular Matrix
1 Chapter 1 Glycosaminoglycans as Active Signaling Components of the Extracellular Matrix Portions of this chapter are published as: Griffin ME, Hsieh-Wilson LC. “Glycan engineering for cell and developmental biology.” Cell Chem. Biol. 2016, 23: 108-121. doi: 10.1016/j.chembiol.2015. 12.007. Review article. 2 1.1 Glycosaminoglycan Structures and Biosynthesis Carbohydrates are generally thought of as a fuel source for life. However, these molecules also function in many other roles necessary for survival including development, angiogenesis, and neuronal growth.1-5 In particular, carbohydrates at the cell surface can strongly regulate signal transduction and cellular activity. This feat is achieved in large part through their structural diversity, which allows them to selectively bind to a variety of different proteins and in turn modulate their functions. Unsurprisingly, the dysregulation of cell-surface carbohydrate production and presentation can contribute to a variety of diseases including inflammation and cancer progression.6, 7 Therefore, discovering relationships between the chemical structures of carbohydrates, the proteins to which they bind, and the resulting biological functions is critical both for the basic understanding of many physiological processes and for the prevention and treatment of various pathologies. Cell-surface carbohydrates exist in a variety of forms and are classified based on their overall size, membrane anchor, monosaccharide composition, glycosidic connections, and further modifications of the monosaccharide -
Glypican (Heparan Sulfate Proteoglycan) Is Palmitoylated, Deglycanated and Reglycanated During Recycling in Skin Fibroblasts
Glycobiology vol. 7 no. 1 pp. 103-112, 1997 Glypican (heparan sulfate proteoglycan) is palmitoylated, deglycanated and reglycanated during recycling in skin fibroblasts Gudrun Edgren1, Birgitta Havsmark, Mats Jonsson and granules (for reviews, see Kjell6n and Lindahl, 1991; Bernfield Lars-Ake Fransson et al., 1992; David, 1993; Heinegard and Oldberg, 1993). Pro- teoglycans are classified according to the characteristic fea- Department of Cell and Molecular Biology, Faculty of Medicine, Lund University, Lund, Sweden tures or properties of the core protein and can appear in many 'To whom correspondence should be addressed at: Department of Cell and glycoforms giving rise to considerable structural variation and Downloaded from https://academic.oup.com/glycob/article/7/1/103/725516 by guest on 30 September 2021 Molecular Biology 1, POB 94, S-221 00, Lund, Sweden functional diversity. In general, the protein part determines the destination of the proteoglycan and interacts with other mol- Skin fibroblasts treated with brefeldin A produce a recy- ecules at the final location. The glycan part provides the overall cling variant of glypican (a glycosylphosphatidylinositol- bulk properties as well as binding sites for other gly- anchored heparan-sulfate proteoglycan) that is resistant to cosaminoglycans and many types of proteins, including matrix inositol-specific phospholipase C and incorporates sulfate proteins, plasma proteins, enzymes, anti-proteinases, growth and glucosamine into heparan sulfate chains (Fransson, factors, and cytokines. L.-A. et aL, Glycobiology, 5, 407-415, 1995). We have now Cultured human fibroblasts synthesize, deposit, and secrete investigated structural modifications of recycling glypican, 3 a variety of proteoglycans and have been used extensively to such as fatty acylation from [ H]palmitate, and degrada- investigate both their biosynthesis and functional properties tion and assembly of heparan sulfate side chains. -
Heparin/Heparan Sulfate Proteoglycans Glycomic Interactome in Angiogenesis: Biological Implications and Therapeutical Use
Molecules 2015, 20, 6342-6388; doi:10.3390/molecules20046342 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Heparin/Heparan Sulfate Proteoglycans Glycomic Interactome in Angiogenesis: Biological Implications and Therapeutical Use Paola Chiodelli, Antonella Bugatti, Chiara Urbinati and Marco Rusnati * Section of Experimental Oncology and Immunology, Department of Molecular and Translational Medicine, University of Brescia, Brescia 25123, Italy; E-Mails: [email protected] (P.C.); [email protected] (A.B.); [email protected] (C.U.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +39-030-371-7315; Fax: +39-030-371-7747. Academic Editor: Els Van Damme Received: 26 February 2015 / Accepted: 1 April 2015 / Published: 10 April 2015 Abstract: Angiogenesis, the process of formation of new blood vessel from pre-existing ones, is involved in various intertwined pathological processes including virus infection, inflammation and oncogenesis, making it a promising target for the development of novel strategies for various interventions. To induce angiogenesis, angiogenic growth factors (AGFs) must interact with pro-angiogenic receptors to induce proliferation, protease production and migration of endothelial cells (ECs). The action of AGFs is counteracted by antiangiogenic modulators whose main mechanism of action is to bind (thus sequestering or masking) AGFs or their receptors. Many sugars, either free or associated to proteins, are involved in these interactions, thus exerting a tight regulation of the neovascularization process. Heparin and heparan sulfate proteoglycans undoubtedly play a pivotal role in this context since they bind to almost all the known AGFs, to several pro-angiogenic receptors and even to angiogenic inhibitors, originating an intricate network of interaction, the so called “angiogenesis glycomic interactome”. -
Glycosaminoglycan Derived from Field Cricket and Its Inhibition Activity of Diabetes Based on Anti-Oxidative Action
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 March 2019 doi:10.20944/preprints201903.0136.v1 1 Glycosaminoglycan derived from field cricket and its inhibition 2 activity of diabetes based on anti-oxidative action 3 1 1 1 2 4 Mi Young Ahn , Ban Ji Kim , Ha Jeong Kim , Jang Mi Jin , Hyung Joo 1 1 3 5 Yoon , Jae Sam Hwang and Byung Mu Lee 1 6 Department of Agricultural Biology, National Academy of Agricultural Science, RDA, 7 Wanju-Gun 55365, South Korea; [email protected] (MYA); [email protected] (BJK.); 8 [email protected] (HJK); [email protected] (HJY); [email protected] (JSH) 2 9 Korean Basic Science Institute, Ochang 863-883, South Korea; [email protected] 3 10 Division of Toxicology, College of Pharmacy, Sungkyunkwan University, Suwon, 440-746, 11 South Korea; [email protected] 12 Running title: Anti-oxidative effect of cricket glycan in db mice 13 14 Prepared for Nutrients 15 *Address correspondence to: Mi Young Ahn, 16 Department of Agricultural Biology, 17 National Academy of Agricultural Science, RDA, 166 18 Nongsaengmyung-Ro, Iseo-Myun, Wanju-Gun, 55365, South Korea, 19 Telephone: 82-63-238-2975. 20 Fax: 82-63-238-3833. 21 E-mail: [email protected] 22 1 © 2019 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 12 March 2019 doi:10.20944/preprints201903.0136.v1 1 Abstract: Field cricket (Gryllus bimaculatus) is newly emerged as an edible insect in 2 several countries. Anti-inflammatory effect of glycosaminoglycan derived this cricket was 3 not fully investigated on chronic disease animal model such as diabetic mouse. -
Search Strategy, Baseline Risk Coronavirus and Prophylaxis For
Supplement 7: Search Strategy, Baseline Risk Coronavirus and prophylaxis for thrombotic events Search narrative, 23 July 2020 Bibliographic databases: EMBASE (1974 to, 22 July 2020) Epistemonikos COVID-19 Evidence (21 July 2020) (includes records from Cochrane Database of Systematic Reviews, Pubmed, EMBASE, CINAHL, PsycINFO, LILACS, Database of reviews of Effects, The Campbell Collaboration online library, JBI Database of Systematic Reviews and Implementation Reports, EPPI-Centre Evidence Library) MEDLINE (1946 to, 23 July 2020) SCOPUS (19 July 2020) WHO Global Research Database (COVID-19) (20 July 2020) Trial/study Databases: Cochrane COVID-19 study register (23 July 2020) (includes records from ClinicalTrials.gov, WHO ICTRN, and PubMed) CYTEL map of ongoing [COVID-19] clinical trials (20 July 2020) (WHO International Clinical Trials Registry Platform, European Clinical Trials Registry, clinicaltrials.gov, Chinese Clinical Trial Registry, German Clinical Trials registry, Japan Primary Registries Network, Iranian Clinical Trial Registry, and Australian New Zealand Clinical Trials Registry) Results were downloaded from sources and deduplicated in EndNote. Results from BioRxiV, ChemRxiV, MedRxiV (preprints indexed in Medline and Epistemonikos), or protocols for clinical trials were removed as they were beyond the scope of the search. COCHRANE COVID-19 (https://covid-19.cochrane.org/) Search 1: anticoagula* or anti-coagula* or coagulation or thromb* or antithromb* or antiplatelet* or heparin or LMWH or aspirin or embol* or phlebothrombos*