microorganisms Article Genomes of Anguillid Herpesvirus 1 Strains Reveal Evolutionary Disparities and Low Genetic Diversity in the Genus Cyprinivirus Owen Donohoe 1,2,†, Haiyan Zhang 1,†, Natacha Delrez 1,† , Yuan Gao 1, Nicolás M. Suárez 3, Andrew J. Davison 3 and Alain Vanderplasschen 1,* 1 Immunology-Vaccinology, Department of Infectious and Parasitic Diseases, Fundamental and Applied Research for Animals & Health (FARAH), Faculty of Veterinary Medicine, University of Liège, B-4000 Liège, Belgium;
[email protected] (O.D.);
[email protected] (H.Z.);
[email protected] (N.D.);
[email protected] (Y.G.) 2 Bioscience Research Institute, Athlone Institute of Technology, Athlone, Co. N37 HD68 Westmeath, Ireland 3 MRC-Centre for Virus Research, University of Glasgow, Glasgow G61 1QH, UK;
[email protected] (N.M.S.);
[email protected] (A.J.D.) * Correspondence:
[email protected]; Tel.: +32-4-366-42-64; Fax: +32-4-366-42-61 † These first authors contributed equally. Abstract: Anguillid herpesvirus 1 (AngHV-1) is a pathogen of eels and a member of the genus Cyprinivirus in the family Alloherpesviridae. We have compared the biological and genomic fea- tures of different AngHV-1 strains, focusing on their growth kinetics in vitro and genetic content, diversity, and recombination. Comparisons based on three core genes conserved among alloher- Citation: Donohoe, O.; Zhang, H.; pesviruses revealed that AngHV-1 exhibits a slower rate of change and less positive selection than Delrez, N.; Gao, Y.; Suárez, N.M.; other cypriniviruses. We propose that this may be linked to major differences in host species and Davison, A.J.; Vanderplasschen, A.