PXR Modulates the Prostate Cancer Cell Response to Afatinib by Regulating the Expression of the Monocarboxylate Transporter SLC16A1
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ABCD3 (F-1): Sc-514728
SANTA CRUZ BIOTECHNOLOGY, INC. ABCD3 (F-1): sc-514728 BACKGROUND APPLICATIONS The peroxisomal membrane contains several ATP-binding cassette (ABC) ABCD3 (F-1) is recommended for detection of ABCD3 of human origin by transporters, ABCD1-4 that are known to be present in the human peroxisome Western Blotting (starting dilution 1:100, dilution range 1:100-1:1000), membrane. All four proteins are ABC half-transporters, which dimerize to form immunoprecipitation [1-2 µg per 100-500 µg of total protein (1 ml of cell an active transporter. A mutation in the ABCD1 gene causes X-linked adreno- lysate)], immunofluorescence (starting dilution 1:50, dilution range 1:50- leukodystrophy (X-ALD), a peroxisomal disorder which affects lipid storage. 1:500) and solid phase ELISA (starting dilution 1:30, dilution range 1:30- ABCD2 in mouse is expressed at high levels in the brain and adrenal organs, 1:3000). which are adversely affected in X-ALD. The peroxisomal membrane comprises Suitable for use as control antibody for ABCD3 siRNA (h): sc-41147, ABCD3 two quantitatively major proteins, PMP22 and ABCD3. ABCD3 is associated shRNA Plasmid (h): sc-41147-SH and ABCD3 shRNA (h) Lentiviral Particles: with irregularly shaped vesicles which may be defective peroxisomes or per- sc-41147-V. oxisome precursors. ABCD1 localizes to peroxisomes. ABCB7 is a half-trans- porter involved in the transport of heme from the mitochondria to the cytosol. Molecular Weight of ABCD3: 75 kDa. Positive Controls: HeLa whole cell lysate: sc-2200, SH-SY5Y cell lysate: REFERENCES sc-3812 or Caco-2 cell lysate: sc-2262. -
Transcriptional and Post-Transcriptional Regulation of ATP-Binding Cassette Transporter Expression
Transcriptional and Post-transcriptional Regulation of ATP-binding Cassette Transporter Expression by Aparna Chhibber DISSERTATION Submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in Pharmaceutical Sciences and Pbarmacogenomies in the Copyright 2014 by Aparna Chhibber ii Acknowledgements First and foremost, I would like to thank my advisor, Dr. Deanna Kroetz. More than just a research advisor, Deanna has clearly made it a priority to guide her students to become better scientists, and I am grateful for the countless hours she has spent editing papers, developing presentations, discussing research, and so much more. I would not have made it this far without her support and guidance. My thesis committee has provided valuable advice through the years. Dr. Nadav Ahituv in particular has been a source of support from my first year in the graduate program as my academic advisor, qualifying exam committee chair, and finally thesis committee member. Dr. Kathy Giacomini graciously stepped in as a member of my thesis committee in my 3rd year, and Dr. Steven Brenner provided valuable input as thesis committee member in my 2nd year. My labmates over the past five years have been incredible colleagues and friends. Dr. Svetlana Markova first welcomed me into the lab and taught me numerous laboratory techniques, and has always been willing to act as a sounding board. Michael Martin has been my partner-in-crime in the lab from the beginning, and has made my days in lab fly by. Dr. Yingmei Lui has made the lab run smoothly, and has always been willing to jump in to help me at a moment’s notice. -
ABC Transporter Subfamily D: Distinct Differences in Behavior Between ABCD1–3 and ABCD4 in Subcellular Localization, Function, and Human Disease
Hindawi Publishing Corporation BioMed Research International Volume 2016, Article ID 6786245, 11 pages http://dx.doi.org/10.1155/2016/6786245 Review Article ABC Transporter Subfamily D: Distinct Differences in Behavior between ABCD1–3 and ABCD4 in Subcellular Localization, Function, and Human Disease Kosuke Kawaguchi and Masashi Morita Department of Biological Chemistry, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan Correspondence should be addressed to Kosuke Kawaguchi; [email protected] Received 24 June 2016; Accepted 29 August 2016 Academic Editor: Hiroshi Nakagawa Copyright © 2016 K. Kawaguchi and M. Morita. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ATP-binding cassette (ABC) transporters are one of the largest families of membrane-bound proteins and transport a wide variety of substrates across both extra- and intracellular membranes. They play a critical role in maintaining cellular homeostasis. To date, four ABC transporters belonging to subfamily D have been identified. ABCD1–3 and ABCD4 are localized to peroxisomes and lysosomes, respectively. ABCD1 and ABCD2 are involved in the transport of long and very long chain fatty acids (VLCFA) or their CoA-derivatives into peroxisomes with different substrate specificities, while ABCD3 is involved in the transport of branched chain acyl-CoA into peroxisomes. On the other hand, ABCD4 is deduced to take part in the transport of vitamin B12 from lysosomes into the cytosol. It is well known that the dysfunction of ABCD1 results in X-linked adrenoleukodystrophy, a severe neurodegenerative disease. -
Binding Cassette Proteins (ABCB1 and ABCC1)
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Electronic Theses and Dissertations 2021 Characterization of Cucurbitacin-Inspired Estrone Analogues as Novel Inhibitors of Human ATP- Binding Cassette Proteins (ABCB1 and ABCC1) Jennifer Kyeremateng South Dakota State University Follow this and additional works at: https://openprairie.sdstate.edu/etd Part of the Biochemistry Commons, Medical Biochemistry Commons, and the Oncology Commons Recommended Citation Kyeremateng, Jennifer, "Characterization of Cucurbitacin-Inspired Estrone Analogues as Novel Inhibitors of Human ATP- Binding Cassette Proteins (ABCB1 and ABCC1)" (2021). Electronic Theses and Dissertations. 5212. https://openprairie.sdstate.edu/etd/5212 This Dissertation - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. CHARACTERIZATION OF CUCURBITACIN -INSPIRED ESTRONE ANALOGUES AS NOVEL INHIBITORS OF HUMAN ATP-BINDING CASSETTE PROTEINS (ABCB1 AND ABCC1) BY JENNIFER KYEREMATENG A dissertation submitted in partial fulfillment of the requirements for the Doctor of Philosophy Major in Biochemistry South Dakota State University 2021 ii DISSERTATION ACCEPTANCE PAGE Jennifer Kyeremateng This dissertation is approved as a creditable and independent investigation by a candidate for the Doctor of Philosophy degree and is acceptable for meeting the dissertation requirements for this degree. Acceptance of this does not imply that the conclusions reached by the candidate are necessarily the conclusions of the major department. -
ABC Transporter Regulation by Protein Phosphorylation in Plant and Mammalian Systems
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Published in "Biochemical Society Transactions 44(2): 663–673, 2016" provided by RERO DOC Digital Library which should be cited to refer to this work. Correction: Learning from each other: ABC transporter regulation by protein phosphorylation in plant and mammalian systems Bibek Aryal*, Christophe Laurent* and Markus Geisler*1 *Department of Biology – Plant Biology, University of Fribourg, Rue Albert Gockel 3, PER04, CH-1700 Fribourg, Switzerland An incorrect version of the article was published in volume Importance of mammalian ABC 43 (issue 5) 966-974 (doi: 10.1042/BST20150128); the correct transporters version of the complete article is presented here. ATP-binding cassette (ABC) transporters are integral membrane proteins ubiquitously present in all phyla [1]. They use the energy of nucleoside triphosphate (mainly ATP) Abstract hydrolysis to pump their substrates across the membrane The ABC (ATP-binding cassette) transporter family in [1]. The list of described substrates is long and diverse and higher plants is highly expanded compared with those includes metabolic products, sugars, metal ions, hormones, of mammalians. Moreover, some members of the plant sterols, lipids and therapeutical drugs [1]. The ABC transport ABCB subfamily display very high substrate specificity nano-machinery encompasses two transmembrane domains compared with their mammalian counterparts that are often (TMDs) and two cytosolic nucleotide-binding domains associated with multidrug resistance (MDR) phenomena. In (NBDs). ATP hydrolysis results in a conformational change this review we highlight prominent functions of plant and of the NBDs, this in-turn brings the substrate across the mammalian ABC transporters and summarize our knowledge membrane in a unidirectional fashion [2]. -
Identification of Novel Snps of ABCD1, ABCD2, ABCD3
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Neurogenetics (2011) 12:41–50 DOI 10.1007/s10048-010-0253-6 ORIGINAL ARTICLE Identification of novel SNPs of ABCD1, ABCD2, ABCD3, and ABCD4 genes in patients with X-linked adrenoleukodystrophy (ALD) based on comprehensive resequencing and association studies with ALD phenotypes Takashi Matsukawa & Muriel Asheuer & Yuji Takahashi & Jun Goto & Yasuyuki Suzuki & Nobuyuki Shimozawa & Hiroki Takano & Osamu Onodera & Masatoyo Nishizawa & Patrick Aubourg & Shoji Tsuji Received: 15 May 2010 /Accepted: 9 July 2010 /Published online: 27 July 2010 # The Author(s) 2010. This article is published with open access at Springerlink.com Abstract Adrenoleukodystrophy (ALD) is an X-linked dis- French ALD cohort with extreme phenotypes. All the order affecting primarily the white matter of the central mutations of ABCD1 were identified, and there was no nervous system occasionally accompanied by adrenal insuffi- correlation between the genotypes and phenotypes of ALD. ciency. Despite the discovery of the causative gene, ABCD1, SNPs identified by the comprehensive resequencing of no clear genotype–phenotype correlations have been estab- ABCD2, ABCD3,andABCD4 were used for association lished. Association studies based on single nucleotide poly- studies. There were no significant associations between these morphisms (SNPs) identified by comprehensive resequencing SNPs and ALD phenotypes, except for the five SNPs of of genes related to ABCD1 may reveal genes modifying ALD ABCD4, which are in complete disequilibrium in the phenotypes. We analyzed 40 Japanese patients with ALD. Japanese population. These five SNPs were significantly less ABCD1 and ABCD2 were analyzed using a newly developed frequently represented in patients with adrenomyeloneurop- microarray-based resequencing system. -
Peroxisomal Cofactor Transport
biomolecules Review Peroxisomal Cofactor Transport Anastasija Plett, Lennart Charton and Nicole Linka * Institute of Plant Biochemistry and Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Universitätsstrasse 1, 40,225 Düsseldorf, Germany; [email protected] (A.P.); [email protected] (L.C.) * Correspondence: [email protected]; Tel.: +49-(0)211-81-10412; Fax: +49-(0)211-81-13706 Received: 2 July 2020; Accepted: 7 August 2020; Published: 12 August 2020 Abstract: Peroxisomes are eukaryotic organelles that are essential for growth and development. They are highly metabolically active and house many biochemical reactions, including lipid metabolism and synthesis of signaling molecules. Most of these metabolic pathways are shared with other compartments, such as Endoplasmic reticulum (ER), mitochondria, and plastids. Peroxisomes, in common with all other cellular organelles are dependent on a wide range of cofactors, such as adenosine 50-triphosphate (ATP), Coenzyme A (CoA), and nicotinamide adenine dinucleotide (NAD). The availability of the peroxisomal cofactor pool controls peroxisome function. The levels of these cofactors available for peroxisomal metabolism is determined by the balance between synthesis, import, export, binding, and degradation. Since the final steps of cofactor synthesis are thought to be located in the cytosol, cofactors must be imported into peroxisomes. This review gives an overview about our current knowledge of the permeability of the peroxisomal membrane with the focus on ATP, CoA, and NAD. Several members of the mitochondrial carrier family are located in peroxisomes, catalyzing the transfer of these organic cofactors across the peroxisomal membrane. Most of the functions of these peroxisomal cofactor transporters are known from studies in yeast, humans, and plants. -
Human ATP-Binding Cassette (ABC) Transporter Family Vasilis Vasiliou,1 Konstandinos Vasiliou1 and Daniel W
GENOME REVIEW Human ATP-binding cassette (ABC) transporter family Vasilis Vasiliou,1 Konstandinos Vasiliou1 and Daniel W. Nebert2* 1Molecular Toxicology and Environmental Health Sciences Program, Department of Pharmaceutical Sciences, University of Colorado Denver, Aurora, CO 80045, USA 2Department of Environmental Health and Center for Environmental Genetics (CEG), University of Cincinnati Medical Center, Cincinnati, OH 45267–0056, USA *Correspondence to: Tel: þ1 513 821 4664; Fax: þ1 513 558 0925; E-mail: [email protected] Date received (in revised form): 23rd February 2009 Abstract There exist four fundamentally different classes of membrane-bound transport proteins: ion channels; transpor- ters; aquaporins; and ATP-powered pumps. ATP-binding cassette (ABC) transporters are an example of ATP- dependent pumps. ABC transporters are ubiquitous membrane-bound proteins, present in all prokaryotes, as well as plants, fungi, yeast and animals. These pumps can move substrates in (influx) or out (efflux) of cells. In mammals, ABC transporters are expressed predominantly in the liver, intestine, blood–brain barrier, blood–testis barrier, placenta and kidney. ABC proteins transport a number of endogenous substrates, including inorganic anions, metal ions, peptides, amino acids, sugars and a large number of hydrophobic compounds and metabolites across the plasma membrane, and also across intracellular membranes. The human genome contains 49 ABC genes, arranged in eight subfamilies and named via divergent evolution. That ABC genes are important is underscored by the fact that mutations in at least 11 of these genes are already known to cause severe inherited diseases (eg cystic fibrosis and X-linked adrenoleukodystrophy [X-ALD]). ABC transporters also participate in the movement of most drugs and their metabolites across cell surface and cellular organelle membranes; thus, defects in these genes can be important in terms of cancer therapy, pharmacokinetics and innumerable pharma- cogenetic disorders. -
ABC Transporters and Scavenger Receptor BI: Important Mediators Of
ABC transporters and scavenger receptor BI : important mediators of lipid metabolism and atherosclerosis Meurs, I. Citation Meurs, I. (2011, June 7). ABC transporters and scavenger receptor BI : important mediators of lipid metabolism and atherosclerosis. Retrieved from https://hdl.handle.net/1887/17686 Version: Corrected Publisher’s Version Licence agreement concerning inclusion of doctoral License: thesis in the Institutional Repository of the University of Leiden Downloaded from: https://hdl.handle.net/1887/17686 Note: To cite this publication please use the final published version (if applicable). Chapter 6 Transcriptional profiling of ABC transporters in murine foam cells and atherosclerotic lesions identifies putative novel targets for improving macrophage lipid homeostasis Illiana Meurs, Martine Bot, Bart Lammers, Theo J.C. Van Berkel, and Miranda Van Eck Division of Biopharmaceutics, Leiden/Amsterdam Center for Drug Research, Gorlaeus Laboratories, Leiden University, Leiden, The Netherlands Manuscript in preparation Chapter 6 ABSTRACT Objective- Excessive accumulation of cholesterol by macrophages leading to their transformation into foam cells is the earliest pathological hallmark of atherosclerosis. Key regulators of macrophage cholesterol and phospholipid efflux are the ATP-binding cassette (ABC) transporters ABCA1 and ABCG1. The objective of this study was to identify new ABC transporters that are differentially expressed during macrophage foam cell formation induced by the commonly used pro-atherogenic lipoproteins βVLDL and -
Genetic Determinants of COVID-19 Drug Efficacy Revealed by Genome-Wide
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.26.356279; this version posted October 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Genetic determinants of COVID-19 drug efficacy revealed by genome-wide CRISPR screens Wei Jiang1,7, Ailing Yang1,7, Jingchuan Ma1,7, Dawei Lv2, Mingxian Liu1, Liang Xu1, Chao Wang1, Zhengjin He1, Shuo Chen1, Jie Zhao1, Shishuang Chen1, Qi Jiang1, Yankai Chu1, Lin Shan1, Zhaocai Zhou3,4, Yun Zhao1,4,5, Gang Long6 and Hai Jiang1* Affiliations: 1 State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences; University of Chinese Academy of Sciences, 320 Yueyang Road, Shanghai 200031, China 2 Institut Pasteur of Shanghai, Chinese Academy of Sciences; University of Chinese Academy of Sciences. 3 State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, 200438, China 4 School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China 5 School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou 310024, China 6 CAS Key Laboratory of Molecular Virology & Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences. 7 These authors contributed equally. *Corresponding should be addressed to H.J. ([email protected], ORCID Identifier: 0000-0002-2508-5413) bioRxiv preprint doi: https://doi.org/10.1101/2020.10.26.356279; this version posted October 27, 2020. -
Roles of ATP-Binding Cassette Transporter A7 in Cholesterol Homeostasis and Host Defense System
274 Journal of Atherosclerosis and Thrombosis Vol.18, No.4 ApoA-I Enhances Phagocytosis by Stabilizing ABCA7 275 Review Roles of ATP-Binding Cassette Transporter A7 in Cholesterol Homeostasis and Host Defense System Nobukiyo Tanaka, Sumiko Abe-Dohmae, Noriyuki Iwamoto, and Shinji Yokoyama Department of Biochemistry, Nagoya City University Graduate School of Medical Sciences, Nagoya Japan ATP-binding cassette transporter (ABC) A7 is an ABC family protein that is a so-called full-size ABC transporter, highly homologous to ABCA1, which mediates the biogenesis of high-density lipo- protein (HDL) with cellular lipid and helical apolipoproteins. ABCA7 mediates the formation of HDL when exogenously transfected and expressed; however, endogenous ABCA7 was shown to have no significant impact on the generation of HDL and was found to be associated with phagocytosis regulated by sterol regulatory element binding protein 2. Since phagocytosis is one of the fundamen- tal functions of animal cells as an important responsive reaction to infection, injury and apoptosis, ABCA7 seems to be one of the key molecules linking sterol homeostasis and the host defense system. In this context, HDL apolipoproteins were shown to enhance phagocytosis by stabilizing ABCA7 against calpain-mediated degradation and increasing its activity, shedding light on a new aspect of the regulation of the host-defense system. J Atheroscler Thromb, 2011; 18:274-281. Key words; ABCA7, ApoA-I, HDL, Phagocytosis, ABCA1, Cholesterol brane protein for cholesterol homeostasis, for the -
Gene Expression Profiling of ABC Transporters in Dermal Fibroblasts Of
Laboratory Investigation (2008) 88, 1303–1315 & 2008 USCAP, Inc All rights reserved 0023-6837/08 $30.00 Gene expression profiling of ABC transporters in dermal fibroblasts of pseudoxanthoma elasticum patients identifies new candidates involved in PXE pathogenesis Doris Hendig1, Thomas Langmann2,3, Sarah Kocken1, Ralf Zarbock1, Christiane Szliska4, Gerd Schmitz2, Knut Kleesiek1 and Christian Go¨tting1 Mutations in the ABCC6 gene, encoding the multidrug resistance-associated protein 6 (MRP6), cause pseudoxanthoma elasticum (PXE). This heritable disorder leads to pathological alterations in connective tissues. The implication of MRP6 deficiency in PXE is still unknown. Moreover, nothing is known about a possible compensatory expression of other ATP binding-cassette (ABC) transporter proteins in MRP6-deficient cells. We investigated the gene expression profile of 47 ABC transporters in human dermal fibroblasts of healthy controls (n ¼ 2) and PXE patients (n ¼ 4) by TaqMan low-density array. The analysis revealed the expression of 37 ABC transporter genes in dermal fibroblasts. ABCC6 gene expression was not quantifiable in fibroblasts derived from PXE patients. Seven genes (ABCA6, ABCA9, ABCA10, ABCB5, ABCC2, ABCC9 and ABCD2) were induced, whereas the gene expression of one gene (ABCA3) was decreased, comparing controls and PXE patients (with at least twofold changes). We reanalyzed the gene expression of selected ABC transporters in a larger set of dermal fibroblasts from controls and PXE patients (n ¼ 6, each). Reanalysis showed high interindividual variability between samples, but confirmed the results obtained in the array analysis. The gene expression of ABC transporter genes, as well as lineage markers of PXE, was further examined after inhibition of ABCC6 gene expression by using specific small-interfering RNA.