Probability of Competition Between Introduced and Native Rodents in Madagascar: an Estimation Based on Morphological Traits
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Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic
bioRxiv preprint doi: https://doi.org/10.1101/650713; this version posted May 27, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic 2 Regions 3 Running head: Mapping evolutionary important regions 4 Renan Maestri1,* & Leandro Duarte1,* 5 1Departamento de Ecologia, Universidade Federal do Rio Grande do Sul, 6 Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, Brazil 7 *Correspondence be sent to: Departamento de Ecologia, Universidade Federal do Rio 8 Grande do Sul, Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, 9 Brazil; E-mail: [email protected]; [email protected] 10 ABSTRACT: Biogeographic regionalization offers context to the geographical 11 evolution of clades. The positions of bioregions inform both the spatial location of 12 clusters in species distribution and where their most important boundaries are. 13 Nevertheless, defining bioregions based on species distribution alone only incidentally 14 recovers regions that are important during the evolution of the focal group. The extent 15 to which bioregions correspond to centers of independent diversification depends on 16 how clusters of species composition naturally reflect the radiation of single clades, 17 which is not the case when mixed colonization occurred. Here, we showed that using 18 phylogenetic turnover based on fuzzy sets, instead of species composition, led to more 19 adequate detection of evolutionary important bioregions, that is, regions that truly 20 account for the independent diversification of lineages. -
Subfamily Nesomyinae)
bs_bs_banner Biological Journal of the Linnean Society, 2013, ••, ••–••. With 5 figures Latitude drives diversification in Madagascar’s endemic dry forest rodent Eliurus myoxinus (subfamily Nesomyinae) JEFF J. SHI1†, LAUREN M. CHAN1*‡, ZAFIMAHERY RAKOTOMALALA2,3, AMY M. HEILMAN1, STEVEN M. GOODMAN3,4 and ANNE D. YODER1 1Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA 2Département de Biologie Animale, Université d’Antananarivo, BP 906, Antananarivo 101, Madagascar 3Association Vahatra, BP 3972, Antananarivo 101, Madagascar 4Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA Received 29 March 2013; revised 14 May 2013; accepted for publication 14 May 2013 Numerous hypotheses have been proposed for the historical processes governing the rich endemism of Madagas- car’s biodiversity. The ‘watershed model’ suggests that drier climates in the recent geological past have resulted in the contraction of forests around major watersheds, thereby defining areas of endemism. We test whether this hypothesis explains phylogeographical patterns in a dry forest-dependent rodent, Eliurus myoxinus, an endemic species widely distributed through western Madagascar. We sequenced the mitochondrial cytochrome b locus and nuclear introns of the β-fibrinogen and the growth hormone receptor genes for E. myoxinus. Using a parametric bootstrapping approach, we tested whether the mitochondrial gene tree data fit expectations of local differentiation given the watershed model. We additionally estimated population differentiation and historical demographic parameters, and reconstructed the spatial history of E. myoxinus to highlight spatial and temporal patterns of differentiation. The data do not support the watershed model as a clear explanation for the genetic patterns of diversity within extant E. -
Prof. Dr. Simone Sommer, University of Ulm Publication Record
Prof. Dr. Simone Sommer, University of Ulm Publication record (peer-reviewed, chronological order) In review Fackelmann F, Gillingham MAF, Schmid J, Heni AC, Wilhelm K, Sommer S. Human encroachment into wildlife gut microbiomes. Fleischer R, Risely A, Hoeck PEA, Keller LF, Sommer S. Mechanisms governing avian phylosymbiosis: genetic dissimilarity based on neutral and MHC regions exhibits little relationship with gut microbiome distributions of Galápagos mockingbirds. Gillingham MAF, Borghesi F, Montero BK, Migani F, Béchet A, Rendón-Martos M, Amat JA, Dinelli E, Sommer S. Site dependent bioaccumulation of trace elements is associated with chick body condition and gut microbiome composition in Greater Flamingos. Jiménez RR, Alvarado G, Sandoval J, Sommer S. Habitat disturbance influences the skin microbiome of a rediscovered neotropical-montane frog. Montero BK, Wasimuddin, Schwensow N, Gillingham MAF, Ratovonamana YR, Rakotondranary SJ, Corman V, Drosten C, Ganzhorn JU, Sommer S. MHC class I and II influence viral and helmith infection via the microbiome. Risely A, Gillingham MAF, Béchet A, Brändel S, Heni A, Heurich M, Menke S, Manser M, Schmid J, Tschapka M, Wasimuddin, Sommer S. Patterns in gut microbiota prevalence across host species and implications for defining the core. Schmid J, Pirzer F, Corman V, Maier G, Wilhelm K, Eibner GJ, Montero BK, Drosten C, Sommer S. Habitat disturbance affects pathogen richness and prevalence in spiny rats via direct and indirect pathways. Víquez-R L, Fleischer R, Wilhelm K, Tschapka M, Sommer S. Jumping the green wall: the use of PNA- DNA clamps to enhance microbiome sampling depth in wildlife microbiome research. 2020 Gillingham MAF, Montero BK, Wilhelm K, Grudzus K, Sommer S, Santos PSC (2020) A novel workflow to improve multi-locus genotyping of wildlife species: an experimental set-up with a known model system. -
Diversification of Muroid Rodents Driven by the Late Miocene Global Cooling Nelish Pradhan University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2018 Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling Nelish Pradhan University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Biochemistry, Biophysics, and Structural Biology Commons, Evolution Commons, and the Zoology Commons Recommended Citation Pradhan, Nelish, "Diversification Of Muroid Rodents Driven By The Late Miocene Global Cooling" (2018). Graduate College Dissertations and Theses. 907. https://scholarworks.uvm.edu/graddis/907 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. DIVERSIFICATION OF MUROID RODENTS DRIVEN BY THE LATE MIOCENE GLOBAL COOLING A Dissertation Presented by Nelish Pradhan to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology May, 2018 Defense Date: January 8, 2018 Dissertation Examination Committee: C. William Kilpatrick, Ph.D., Advisor David S. Barrington, Ph.D., Chairperson Ingi Agnarsson, Ph.D. Lori Stevens, Ph.D. Sara I. Helms Cahan, Ph.D. Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT Late Miocene, 8 to 6 million years ago (Ma), climatic changes brought about dramatic floral and faunal changes. Cooler and drier climates that prevailed in the Late Miocene led to expansion of grasslands and retreat of forests at a global scale. -
Chromosomal Numbers in African Giant Rat (Cricetomysgambianus, Waterhouse-1840)
IOSR Journal of Dental and Medical Sciences (IOSR-JDMS) e-ISSN: 2279-0853, p-ISSN: 2279-0861.Volume 18, Issue 7 Ser. 6 (July. 2019), PP 26-31 www.iosrjournals.org Chromosomal Numbers in African Giant Rat (Cricetomysgambianus, Waterhouse-1840) Ahmad, Im1, Musa, Sa2, Nzalak, Jo3 1Department of Anatomy, Faculty of Basic Medical Sciences, College of Health Sciences, UsmanuDanfodiyo University, Sokoto, Nigeria. 2Department of Human Anatomy, Faculty of Basic Medical Sciences, College of Health Sciences, Ahmadu Bello University, Zaria, Kaduna, Nigeria. 3Department of Veterinary Anatomy, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria. Kaduna, Nigeria. Corresponding Author: Ahmad, IM Abstract: Background: Karyotypic studies were carried out on the African giant rat, Cricetomysgambianus, Waterhouse-1840 with the aim of determining its chromosome diploid numbers and autosomal fundamental numbers. Methods: The chromosomes were prepared from the conventional bone marrow of two (2) African giant rats – a male and a female treated intra-peritoneally with 2 ml of 0.04% colchicines for 3 hours. Chromosomes in well spread mitotic metaphase cells were counted and measured using KaryoType computer software. Chromosomal numbers were identified. Ideograms were also constructed from the measurements. Data were collected and analysed using SPSS version 20. Results: A diploid chromosome number of 2n = 80 with an autosomal fundamental number (NFa) of 66 and 95 were obtained for the species of C. gambianus used in this study. The X chromosomes were medium-sized metacentric and small acrocentric while the Y chromosome was small acrocentric. Conclusion: Cricetomysgambianus was found to have an identifiable autosomal diploid number,The findings resembled those in Benin, Senegal, Niger, Cameroun and other countries. -
Endemic Small Mammals Captured Outside of Natural Habitats in the Moramanga District, Central Eastern Madagascar
Terrestrial “forest-dwelling” endemic small mammals captured outside of natural habitats in the Moramanga District, central eastern Madagascar Toky M. Randriamoria1,2, Voahangy Soarimalala2 petits mammifères, par le biais des trous-pièges et & Steven M. Goodman2, 3 des pièges standards, menées dans cinq villages du 1Département de Biologie Animale, Faculté des District de Moramanga, dans la partie Est-centrale Sciences, Université d’Antananarivo, BP 906, de Madagascar, en 2013 (saison sèche) et en 2014 Antananarivo 101, Madagascar (saison humide) ont permis d’attraper pour la première E-mail: [email protected] fois deux espèces d’Afrosoricida endémiques, 2 Association Vahatra, BP 3972, Antananarivo 101, Microgale majori et M. thomasi, dans des habitats Madagascar anthropogéniques en dehors des forêts naturelles. E-mail: [email protected] La première espèce a été répertoriée dans deux 3Field Museum of Natural History, 1400 South Lake sites (Ambalafary et Antsahatsaka) à travers deux Shore Drive, Chicago, Illinois 60605, USA types d’habitats principaux : la forêt d’Eucalyptus et E-mail: [email protected] le savoka. Le terme savoka désigne des formations végétales secondaires souvent peu pénétrables et correspond à la période de jachère des cultures sur Abstract brûlis. Ces habitats de capture sont situés près de The vast majority of Malagasy rodent (Subfamily 770 m jusqu’à plus de 3 km d’une forêt naturelle. Nesomyinae) and tenrec (Subfamily Oryzorictinae) Concernant M. thomasi, un spécimen a été capturé species living in the eastern humid forest are thought dans un savoka situé à près d’une centaine de to be strictly forest-dwelling. Small mammals surveys mètres d’une forêt naturelle, dans le site de Besakay. -
Rapid Pace of Species Extinctions Mounts to a 'Crisis'
Rapid Pace of Species Extinctions Mounts to a 'Crisis' GLAND, Switzerland, November 3, 2009 (ENS) - Nearly one-third of all known species of plants and animals are threatened with extinction, finds the International Union for the Conservation of Nature, IUCN, in the most recent update of its authoritative Red List of Threatened Species� issued today. The updated assessment shows that 17,291 species out of the 47,677 assessed species are threatened with extinction. "The scientific evidence of a serious extinction crisis is mounting," warns Jane Smart, director of IUCN's Biodiversity Conservation Group. The IUCN finds that 21 percent of all known mammals, 30 percent of all known amphibians, 12 percent of all known birds, and 28 percent of reptiles, 37 percent of freshwater fishes, 70 percent of plants, 35 percent of invertebrates assessed so far are at risk. "This year's IUCN Red List makes for sobering reading," says Craig Hilton-Taylor, manager of the IUCN Red List Unit. "These results are just the tip of the iceberg. We have only managed to assess 47,663 species so far; there are many more millions out there which could be under serious threat." "We do, however, know from experience that conservation action works so let's not wait until it's too late and start saving our species now," urged Hilton- Taylor. Threatened by climate change, the hooded grebe, Podiceps gallardoi, of Argentina, was "January sees the launch of the International Year of uplisted from Near Threatened to Biodiversity, said Smart. "The latest analysis of the Endangered in 2009. -
Morphology Captures Diet and Locomotor Types in Rodents Authors: Luis D
Royal Society Open Science Supplementary material for: Morphology captures diet and locomotor types in rodents Authors: Luis D. Verde Arregoitia, Diana O. Fisher, and Manuel Schweizer Data definition The following files can be downloaded from: http://doi.org/10.5281/zenodo.201147 Ecological data (DietLocomotion.csv) . Diet type and locomotion categories and the data sources used to assign them, following the numbered reference lists below (Reference Lists 3 and 4). Body size data (bodySizes.csv). Body size data for all 208 species with data sources, following the numbered reference list below (Reference List 2). Specimens examined (measurementsFinal.csv). Original measurements taken by LDVA. The mus field identifies the collections that house the specimens. QM = Queensland Museum (Brisbane, Australia), AusMus = Australian Museum (Sydney, Australia), MZFC = ‘‘Alfonso L. Herrera’’ Zoology Museum (UNAM, Mexico City, Mexico). See main text for measurement methods and definitions. Species means (meansMasses.csv). Mean values for all 14 measurements with their data source. Values derived from specimens measured by LDVA are identified with in the dataProv field as “LD”. Other values were collated from the sources in Reference List 1 and updated from amended tables and correspondence with the lead author (identified in the table as “AM”). Sources for body mass data are detailed separately. See main text for measurement methods and definitions. All other tables are produced as intermediate or final outputs of the analysis scripts provided The R scripts are named in the order in which they can be used. “phylo.fda.v0.2noPlotting” needs to be sourced for several of the analyses. Table S1. Taxonomic context of species examined in this study. -
Norntatesamerican MUSEUM PUBLISHED by the AMERICAN MUSEUM of NATURAL HISTORY CENTRAL PARK WEST at 79TH STREET, NEW YORK, N.Y
NorntatesAMERICAN MUSEUM PUBLISHED BY THE AMERICAN MUSEUM OF NATURAL HISTORY CENTRAL PARK WEST AT 79TH STREET, NEW YORK, N.Y. 10024 Number 3087, 55 pp., 24 figures, 5 tables February 16, 1994 Systematic Studies of Madagascar's Endemic Rodents (Muroidea: Nesomyinae): Revision of the Genus Eliurus MICHAEL D. CARLETON' CONTENTS Abstract ....................................................................... 2 Introduction ................................................................... 2 Taxonomic History .................... ........................... 3 Materials and Methods. 4 Acknowledgments .7 Characterization of the Genus. 7 External. 7 Cranial and Postcranial Skeleton. 8 Dentition .10 Accounts of Species .10 Eliurus Milne Edwards .11 Eliurus myoxinus Milne Edwards .12 Eliurus minor Major .15 Eliurus majori Thomas . ..................................................... .20 Eliurus penicillatus Thomas ................................ .....................23 Eliurus tanala Major ...................................... ................... 25 Eliurus webbi Ellerman, new rank .......................... ................... 33 Eliurus petteri, new species ................................ ................... 37 Eliurus ellermani, new species ............................. ................... 39 Interspecific Relationships ................................... ................... 40 Morphometric Comparisons ............................... ................... 42 Phyletic Inferences ....................................... ................... 43 -
Petits Mammifères (Afrosoricida Et Rodentia) Nouvellement Recensés Dans Le Parc National D’Andohahela (Parcelle 1), Madagascar
66 NOTES built their nest above the weaver colony, which was sites in nearby areas. Hence, the unusual placement also in active breeding. of the Madagascar Buzzard nest maybe an adaptation That same day I observed the raptor nest for 4 for a suitable nesting site. It would be interesting to h (7-11 am), and no aggressive interaction was know if this was a unique incident or if it occurs with observed between the weavers and adult raptors. some regularity in other areas in Madagascar lacking The adult buzzard attending the nest was a female, extensive nesting habitat. which left the nest on occasion and moved to other trees within a distance of about 150 m, presumably Acknowledgements waiting for the male to deliver prey. This behavior is I would like to thank Russell Thorstrom for his normal for raptors when the male is absent during a comments on the draft of this paper, and The Peregrine long period looking for food; the same behavior has Fund Madagascar Project staff for their suggestions. been observed for the Henst Goshawk (Accipiter Thanks also to Lucienne Wilmé and Steven M. henstii) and Madagascar Harrier-hawk (Polyboroides radiatus) (Rene de Roland, 2000). Goodman for their comments on this note. The case reported herein appears to be the first example of the Madagascar Buzzard building a nest References in association with a colony of passerines. For other Berkelman, J. D. 1995. Nest site characteristics of the members of the genus Buteo, there are parallel Madagascar Buzzard in the rain forest of the Masoala observations. -
Ecologically-Based Management of Rodent Pests ECOLOGICALL V-BASED MANAGEMENT of RODENT PESTS
Ecologically-based Management of Rodent Pests ECOLOGICALL V-BASED MANAGEMENT OF RODENT PESTS Edited by: Grant R. Singleton, Lyn A. Hinds, Herwig Leirs and Zhibin Zhang Australian Centre for International Agricultural Research Canberra 1999 The Australian Centre for International Agricultural Research (ACIAR) was established in June 1982 by an Act of the Australian Parliament. Its primary mandate is to help identify agricultural problems in developing countries and to commission collaborative research between Australian and developing country researchers in fields where Australia has special competence. Where trade names are used this constitutes neither endorsement of nor discrimination against any product by the Centre. ACIAR MONOGRAPH SERIES This peer-reviewed series contains the results of original research supported by ACIAR, or deemed relevant to ACIAR's research objectives. The series is distributed internationally, with an emphasis on the Third World ©Australian Centre for International Agricultural Research GPO Box Canberra, ACT 2601. Singleton, C.R., Hinds, L.A., Leirs, H. and Zhang, Z.ed. 1999. Ecologically-based management of rodent ACIAR Monograph No. 59, 494p. ISBN 1 86320 262 5 Editing and design by Arawang Communication Croup, Canberra Printed by Brown Prior Anderson, Melbourne, Australia page Author Contact Details 8 Abbreviations 12 List of Species 13 Preface 15 1. Ecologically-based Management of Rodent Pests-Re-evaluating 17 Our Approach to an Old Problem Grant R. Singleton, Herwig Leirs, Lyn A. Hinds and Zhibin Zhang Section 1 Basic Research - the Foundation for Sound Management 31 2. Current Paradigms of Rodent Population Dynamics- 33 What Are We Missing? Charles J. Krebs 3. The Behaviour and Ecology of Rattus norvegicus: from Opportunism to 49 Kamikaze Tendencies David W. -
List of Vertebrate Species Recorded at Tsinjoarivo
VERTEBRATE SPECIES RECORDED AT TSINJOARIVO, MADAGASCAR Compiled by M. Irwin, 2010 SOURCE: English Name Scientific Name Local Name 1 2 3 4 MAMMALIA: PRIMATES Diademed Sifaka Propithecus diadema ssp. - EN Sadabe + + + Lesser Bamboo Lemur Hapalemur griseus - VU Kotraika + + + Brown Lemur Eulemur fulvus – NT Varika + + + Red-Bellied Lemur Eulemur rubriventer - VU Varika mena + + Woolly Lemur Avahi laniger – LC Ramiona (Avahina) + + + Sportive Lemur Lepilemur mustelinus – DD Tsidika + + + Mouse Lemur Microcebus rufus – LC Tsilamodamoka + + + Crossley’s Dwarf Lemur Cheirogaleus crossleyi - DD Matavirambo + Sibree’s Dwarf Lemur Cheirogaleus sibreei - DD Matavirambo + Aye-aye Daubentonia madagascariensis - NT Hay-hay + + Black and White Ruffed Lemur Varecia variegata variegata ? ? MAMMALIA: INSECTIVORA Common Tenrec Tenrec ecaudatus – LC Trandraka + + + Shrew Tenrecs: Microgale cowani – LC + + Microgale dobsoni – LC + + Microgale fotsifotsy – LC + Microgale gracilis – LC + + Microgale gymnorhyncha – LC + Microgale longicaudata – LC + + Microgale major 1 – LC + Microgale parvula – LC + Microgale pusilla – LC + Microgale soricoides – LC + Microgale taiva – LC + Microgale thomasi – LC + + Lowland Streaked Tenrec Hemicentetes semispinosus – LC Sora + + + Highland Streaked Tenrec Hemicentetes nigriceps – LC Sora + Greater Hedgehog Tenrec Setifer setosus – LC + + Rice Tenrec Oryzorictes hova – LC + * Musk Shrew Suncus murinus – LC + MAMMALIA: RODENTIA Tuft-tailed Rats: Eliurus grandidieri – LC + Eliurus majori – LC + Eliurus minor – LC + Voalavoanala