File System Directories with Millions of Files
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Efficient Implementation of Data Objects in the OSD+-Based Fusion
Efficient Implementation of Data Objects in the OSD+-Based Fusion Parallel File System Juan Piernas(B) and Pilar Gonz´alez-F´erez Departamento de Ingenier´ıa y Tecnolog´ıa de Computadores, Universidad de Murcia, Murcia, Spain piernas,pilar @ditec.um.es { } Abstract. OSD+s are enhanced object-based storage devices (OSDs) able to deal with both data and metadata operations via data and direc- tory objects, respectively. So far, we have focused on designing and implementing efficient directory objects in OSD+s. This paper, however, presents our work on also supporting data objects, and describes how the coexistence of both kinds of objects in OSD+s is profited to efficiently implement data objects and to speed up some commonfile operations. We compare our OSD+-based Fusion Parallel File System (FPFS) with Lustre and OrangeFS. Results show that FPFS provides a performance up to 37 better than Lustre, and up to 95 better than OrangeFS, × × for metadata workloads. FPFS also provides 34% more bandwidth than OrangeFS for data workloads, and competes with Lustre for data writes. Results also show serious scalability problems in Lustre and OrangeFS. Keywords: FPFS OSD+ Data objects Lustre OrangeFS · · · · 1 Introduction File systems for HPC environment have traditionally used a cluster of data servers for achieving high rates in read and write operations, for providing fault tolerance and scalability, etc. However, due to a growing number offiles, and an increasing use of huge directories with millions or billions of entries accessed by thousands of processes at the same time [3,8,12], some of thesefile systems also utilize a cluster of specialized metadata servers [6,10,11] and have recently added support for distributed directories [7,10]. -
Globalfs: a Strongly Consistent Multi-Site File System
GlobalFS: A Strongly Consistent Multi-Site File System Leandro Pacheco Raluca Halalai Valerio Schiavoni University of Lugano University of Neuchatelˆ University of Neuchatelˆ Fernando Pedone Etienne Riviere` Pascal Felber University of Lugano University of Neuchatelˆ University of Neuchatelˆ Abstract consistency, availability, and tolerance to partitions. Our goal is to ensure strongly consistent file system operations This paper introduces GlobalFS, a POSIX-compliant despite node failures, at the price of possibly reduced geographically distributed file system. GlobalFS builds availability in the event of a network partition. Weak on two fundamental building blocks, an atomic multicast consistency is suitable for domain-specific applications group communication abstraction and multiple instances of where programmers can anticipate and provide resolution a single-site data store. We define four execution modes and methods for conflicts, or work with last-writer-wins show how all file system operations can be implemented resolution methods. Our rationale is that for general-purpose with these modes while ensuring strong consistency and services such as a file system, strong consistency is more tolerating failures. We describe the GlobalFS prototype in appropriate as it is both more intuitive for the users and detail and report on an extensive performance assessment. does not require human intervention in case of conflicts. We have deployed GlobalFS across all EC2 regions and Strong consistency requires ordering commands across show that the system scales geographically, providing replicas, which needs coordination among nodes at performance comparable to other state-of-the-art distributed geographically distributed sites (i.e., regions). Designing file systems for local commands and allowing for strongly strongly consistent distributed systems that provide good consistent operations over the whole system. -
Storage Systems and Input/Output 2018 Pre-Workshop Document
Storage Systems and Input/Output 2018 Pre-Workshop Document Gaithersburg, Maryland September 19-20, 2018 Meeting Organizers Robert Ross (ANL) (lead organizer) Glenn Lockwood (LBL) Lee Ward (SNL) (co-lead) Kathryn Mohror (LLNL) Gary Grider (LANL) Bradley Settlemyer (LANL) Scott Klasky (ORNL) Pre-Workshop Document Contributors Philip Carns (ANL) Quincey Koziol (LBL) Matthew Wolf (ORNL) 1 Table of Contents 1 Table of Contents 2 2 Executive Summary 4 3 Introduction 5 4 Mission Drivers 7 4.1 Overview 7 4.2 Workload Characteristics 9 4.2.1 Common observations 9 4.2.2 An example: Adjoint-based sensitivity analysis 10 4.3 Input/Output Characteristics 11 4.4 Implications of In Situ Analysis on the SSIO Community 14 4.5 Data Organization and Archiving 15 4.6 Metadata and Provenance 18 4.7 Summary 20 5 Computer Science Challenges 21 5.1 Hardware/Software Architectures 21 5.1.1 Storage Media and Interfaces 21 5.1.2 Networks 21 5.1.3 Active Storage 22 5.1.4 Resilience 23 5.1.5 Understandability 24 5.1.6 Autonomics 25 5.1.7 Security 26 5.1.8 New Paradigms 27 5.2 Metadata, Name Spaces, and Provenance 28 5.2.1 Metadata 28 5.2.2 Namespaces 30 5.2.3 Provenance 30 5.3 Supporting Science Workflows - SAK 32 5.3.1 DOE Extreme Scale Use cases - SAK 33 5.3.2 Programming Model Integration - (Workflow Composition for on line workflows, and for offline workflows ) - MW 33 5.3.3 Workflows (Engine) - Provision and Placement MW 34 5.3.4 I/O Middleware and Libraries (Connectivity) - both on-and offline, (not or) 35 2 Storage Systems and Input/Output 2018 Pre-Workshop -
CIS 191 Linux Lab Exercise
CIS 191 Linux Lab Exercise Lab 9: Backup and Restore Fall 2008 Lab 9: Backup and Restore The purpose of this lab is to explore the different types of backups and methods of restoring them. We will look at three utilities often used for backups and learn the advantages and disadvantages of each. Supplies • VMWare Server 1.05 or higher • Benji VM Preconfiguration • Labs 6 and Labs 7 completed on a pristine Benji VM [root@benji /]# fdisk -l Disk /dev/sda: 5368 MB, 5368709120 bytes 255 heads, 63 sectors/track, 652 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Device Boot Start End Blocks Id System /dev/sda1 * 1 382 3068383+ 83 Linux /dev/sda2 383 447 522112+ 82 Linux swap / Solaris /dev/sda3 448 511 514080 83 Linux /dev/sda4 512 652 1132582+ 5 Extended /dev/sda5 512 549 305203+ 83 Linux /dev/sda6 550 556 56196 83 Linux /dev/sda7 557 581 200781 83 Linux [root@benji /]# [root@benji /]# mount /dev/sda1 on / type ext3 (rw) proc on /proc type proc (rw) sysfs on /sys type sysfs (rw) devpts on /dev/pts type devpts (rw,gid=5,mode=620) tmpfs on /dev/shm type tmpfs (rw) /dev/sda5 on /opt type ext3 (rw) /dev/sda3 on /var type ext3 (rw) none on /proc/sys/fs/binfmt_misc type binfmt_misc (rw) sunrpc on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw) /dev/sda7 on /home type ext3 (rw,usrquota) [root@benji /]# cat /etc/fstab LABEL=/1 / ext3 defaults 1 1 devpts /dev/pts devpts gid=5,mode=620 0 0 tmpfs /dev/shm tmpfs defaults 0 0 LABEL=/opt /opt ext3 defaults 1 2 proc /proc proc defaults 0 0 sysfs /sys sysfs defaults 0 0 LABEL=/var /var ext3 defaults 1 2 LABEL=SWAP-sda2 swap swap defaults 0 0 LABEL=/home /home ext3 usrquota,defaults 1 2 [root@benji /]# Forum If you get stuck on one of the steps below don’t beat your head against the wall. -
Connecting the Storage System to the Solaris Host
Configuration Guide for Solaris™ Host Attachment Hitachi Virtual Storage Platform Hitachi Universal Storage Platform V/VM FASTFIND LINKS Document Organization Product Version Getting Help Contents MK-96RD632-05 Copyright © 2010 Hitachi, Ltd., all rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying and recording, or stored in a database or retrieval system for any purpose without the express written permission of Hitachi, Ltd. (hereinafter referred to as “Hitachi”) and Hitachi Data Systems Corporation (hereinafter referred to as “Hitachi Data Systems”). Hitachi Data Systems reserves the right to make changes to this document at any time without notice and assumes no responsibility for its use. This document contains the most current information available at the time of publication. When new and/or revised information becomes available, this entire document will be updated and distributed to all registered users. All of the features described in this document may not be currently available. Refer to the most recent product announcement or contact your local Hitachi Data Systems sales office for information about feature and product availability. Notice: Hitachi Data Systems products and services can be ordered only under the terms and conditions of the applicable Hitachi Data Systems agreement(s). The use of Hitachi Data Systems products is governed by the terms of your agreement(s) with Hitachi Data Systems. Hitachi is a registered trademark of Hitachi, Ltd. in the United States and other countries. Hitachi Data Systems is a registered trademark and service mark of Hitachi, Ltd. -
High Velocity Kernel File Systems with Bento
High Velocity Kernel File Systems with Bento Samantha Miller, Kaiyuan Zhang, Mengqi Chen, and Ryan Jennings, University of Washington; Ang Chen, Rice University; Danyang Zhuo, Duke University; Thomas Anderson, University of Washington https://www.usenix.org/conference/fast21/presentation/miller This paper is included in the Proceedings of the 19th USENIX Conference on File and Storage Technologies. February 23–25, 2021 978-1-939133-20-5 Open access to the Proceedings of the 19th USENIX Conference on File and Storage Technologies is sponsored by USENIX. High Velocity Kernel File Systems with Bento Samantha Miller Kaiyuan Zhang Mengqi Chen Ryan Jennings Ang Chen‡ Danyang Zhuo† Thomas Anderson University of Washington †Duke University ‡Rice University Abstract kernel-level debuggers and kernel testing frameworks makes this worse. The restricted and different kernel programming High development velocity is critical for modern systems. environment also limits the number of trained developers. This is especially true for Linux file systems which are seeing Finally, upgrading a kernel module requires either rebooting increased pressure from new storage devices and new demands the machine or restarting the relevant module, either way on storage systems. However, high velocity Linux kernel rendering the machine unavailable during the upgrade. In the development is challenging due to the ease of introducing cloud setting, this forces kernel upgrades to be batched to meet bugs, the difficulty of testing and debugging, and the lack of cloud-level availability goals. support for redeployment without service disruption. Existing Slow development cycles are a particular problem for file approaches to high-velocity development of file systems for systems. -
Managing File Systems in Oracle® Solaris 11.4
® Managing File Systems in Oracle Solaris 11.4 Part No: E61016 November 2020 Managing File Systems in Oracle Solaris 11.4 Part No: E61016 Copyright © 2004, 2020, Oracle and/or its affiliates. License Restrictions Warranty/Consequential Damages Disclaimer This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. Warranty Disclaimer The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. Restricted Rights Notice If this is software or related documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, then the following notice is applicable: U.S. GOVERNMENT END USERS: Oracle programs (including any operating system, integrated software, any programs embedded, installed or activated on delivered hardware, and modifications of such programs) and Oracle computer documentation or other Oracle data delivered to or accessed by U.S. Government end users are "commercial computer software" or "commercial -
HFAA: a Generic Socket API for Hadoop File Systems
HFAA: A Generic Socket API for Hadoop File Systems Adam Yee Jeffrey Shafer University of the Pacific University of the Pacific Stockton, CA Stockton, CA [email protected] jshafer@pacific.edu ABSTRACT vices: one central NameNode and many DataNodes. The Hadoop is an open-source implementation of the MapReduce NameNode is responsible for maintaining the HDFS direc- programming model for distributed computing. Hadoop na- tory tree. Clients contact the NameNode in order to perform tively integrates with the Hadoop Distributed File System common file system operations, such as open, close, rename, (HDFS), a user-level file system. In this paper, we intro- and delete. The NameNode does not store HDFS data itself, duce the Hadoop Filesystem Agnostic API (HFAA) to allow but rather maintains a mapping between HDFS file name, Hadoop to integrate with any distributed file system over a list of blocks in the file, and the DataNode(s) on which TCP sockets. With this API, HDFS can be replaced by dis- those blocks are stored. tributed file systems such as PVFS, Ceph, Lustre, or others, thereby allowing direct comparisons in terms of performance Although HDFS stores file data in a distributed fashion, and scalability. Unlike previous attempts at augmenting file metadata is stored in the centralized NameNode service. Hadoop with new file systems, the socket API presented here While sufficient for small-scale clusters, this design prevents eliminates the need to customize Hadoop’s Java implementa- Hadoop from scaling beyond the resources of a single Name- tion, and instead moves the implementation responsibilities Node. Prior analysis of CPU and memory requirements for to the file system itself. -
Unionfs: User- and Community-Oriented Development of a Unification File System
Unionfs: User- and Community-Oriented Development of a Unification File System David Quigley, Josef Sipek, Charles P. Wright, and Erez Zadok Stony Brook University {dquigley,jsipek,cwright,ezk}@cs.sunysb.edu Abstract If a file exists in multiple branches, the user sees only the copy in the higher-priority branch. Unionfs allows some branches to be read-only, Unionfs is a stackable file system that virtually but as long as the highest-priority branch is merges a set of directories (called branches) read-write, Unionfs uses copy-on-write seman- into a single logical view. Each branch is as- tics to provide an illusion that all branches are signed a priority and may be either read-only writable. This feature allows Live-CD develop- or read-write. When the highest priority branch ers to give their users a writable system based is writable, Unionfs provides copy-on-write se- on read-only media. mantics for read-only branches. These copy- on-write semantics have lead to widespread There are many uses for namespace unifica- use of Unionfs by LiveCD projects including tion. The two most common uses are Live- Knoppix and SLAX. In this paper we describe CDs and diskless/NFS-root clients. On Live- our experiences distributing and maintaining CDs, by definition, the data is stored on a read- an out-of-kernel module since November 2004. only medium. However, it is very convenient As of March 2006 Unionfs has been down- for users to be able to modify the data. Uni- loaded by over 6,700 unique users and is used fying the read-only CD with a writable RAM by over two dozen other projects. -
We Get Letters Sept/Oct 2018
SEE TEXT ONLY WeGetletters by Michael W Lucas letters@ freebsdjournal.org tmpfs, or be careful to monitor tmpfs space use. Hey, FJ Letters Dude, Not that you’ll configure your monitoring system Which filesystem should I use? to watch tmpfs, because it’s temporary. And no matter what, one day you’ll forget —FreeBSD Newbie that you used memory space as a filesystem. You’ll stash something vital in that temporary space, then reboot. And get really annoyed Dear FreeBSD Newbie, when that vital data vanishes into the ether. First off, welcome to FreeBSD. The wider com- Some other filesystems aren’t actively terrible. munity is glad to help you. The device filesystem devfs(5) provides device Second, please let me know who told you to nodes. Filesystems that can’t store user data are start off by writing me. I need to properly… the best filesystems. But then some clever sysad- “thank” them. min decides to hack on /etc/devfs.rules to Filesystems? Sure, let’s talk filesystems. change the standard device nodes for their spe- Discussing which filesystem is the worst is like cial application, or /etc/devd.conf to create or debating the merits of two-handed swords as reconfigure device nodes, and the whole system compared to lumberjack-grade chainsaws and goes down the tubes. industrial tulip presses. While every one of them Speaking of clever sysadmins, now and then has perfectly legitimate uses, in the hands of the people decide that they want to optimize disk novice they’re far more likely to maim everyone space or cut down how many copies of a file involved. -
Maximizing the Performance of Scientific Data Transfer By
Maximizing the Performance of Scientific Data Transfer by Optimizing the Interface Between Parallel File Systems and Advanced Research Networks Nicholas Millsa,∗, F. Alex Feltusb, Walter B. Ligon IIIa aHolcombe Department of Electrical and Computer Engineering, Clemson University, Clemson, SC bDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC Abstract The large amount of time spent transferring experimental data in fields such as genomics is hampering the ability of scientists to generate new knowledge. Often, computer hardware is capable of faster transfers but sub-optimal transfer software and configurations are limiting performance. This work seeks to serve as a guide to identifying the optimal configuration for performing genomics data transfers. A wide variety of tests narrow in on the optimal data transfer parameters for parallel data streaming across Internet2 and between two CloudLab clusters loading real genomics data onto a parallel file system. The best throughput was found to occur with a configuration using GridFTP with at least 5 parallel TCP streams with a 16 MiB TCP socket buffer size to transfer to/from 4{8 BeeGFS parallel file system nodes connected by InfiniBand. Keywords: Software Defined Networking, High Throughput Computing, DNA sequence, Parallel Data Transfer, Parallel File System, Data Intensive Science 1. Introduction of over 2,500 human genomes from 26 populations have been determined (The 1000 Genomes Project [3]); genome Solving scientific problems on a high-performance com- sequences have been produced for 3,000 rice varieties from puting (HPC) cluster will happen faster by taking full ad- 89 countries (The 3000 Rice Genomes Project [4]). These vantage of specialized infrastructure such as parallel file raw datasets are but a few examples that aggregate into systems and advanced software-defined networks. -
Comparison of Kernel and User Space File Systems
Comparison of kernel and user space file systems — Bachelor Thesis — Arbeitsbereich Wissenschaftliches Rechnen Fachbereich Informatik Fakultät für Mathematik, Informatik und Naturwissenschaften Universität Hamburg Vorgelegt von: Kira Isabel Duwe E-Mail-Adresse: [email protected] Matrikelnummer: 6225091 Studiengang: Informatik Erstgutachter: Professor Dr. Thomas Ludwig Zweitgutachter: Professor Dr. Norbert Ritter Betreuer: Michael Kuhn Hamburg, den 28. August 2014 Abstract A file system is part of the operating system and defines an interface between OS and the computer’s storage devices. It is used to control how the computer names, stores and basically organises the files and directories. Due to many different requirements, such as efficient usage of the storage, a grand variety of approaches arose. The most important ones are running in the kernel as this has been the only way for a long time. In 1994, developers came up with an idea which would allow mounting a file system in the user space. The FUSE (Filesystem in Userspace) project was started in 2004 and implemented in the Linux kernel by 2005. This provides the opportunity for a user to write an own file system without editing the kernel code and therefore avoid licence problems. Additionally, FUSE offers a stable library interface. It is originally implemented as a loadable kernel module. Due to its design, all operations have to pass through the kernel multiple times. The additional data transfer and the context switches are causing some overhead which will be analysed in this thesis. So, there will be a basic overview about on how exactly a file system operation takes place and which mount options for a FUSE-based system result in a better performance.