FOXP2 in Focus: What Can Genes Tell Us About Speech and Language?
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Itcs) in the Mouse Amygdala of Tshz1 Mutants Correlates with Fear, Depression, and Social Interaction Phenotypes
1160 • The Journal of Neuroscience, January 31, 2018 • 38(5):1160–1177 Development/Plasticity/Repair Loss of Intercalated Cells (ITCs) in the Mouse Amygdala of Tshz1 Mutants Correlates with Fear, Depression, and Social Interaction Phenotypes X Jeffrey Kuerbitz,1 Melinda Arnett,5 Sarah Ehrman,1 XMichael T. Williams,3 XCharles V. Vorhees,3 X Simon E. Fisher,6,7 Alistair N. Garratt,8 XLouis J. Muglia,5 Ronald R. Waclaw,1,4 and XKenneth Campbell1,2 Divisions of 1Developmental Biology, 2Neurosurgery, 3Neurology, 4Experimental Hematology and Cancer Biology, 5Center for Prevention of Preterm Birth, Perinatal Institute, Cincinnati Children’s Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229, 6Language and Genetics Department, Max Planck Institute for Psycholinguistics, 6500 AH Nijmegen, The Netherlands, 7Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, The Netherlands, and 8Institute of Cell Biology and Neurobiology, Center for Anatomy, Charite´ University Hospital Berlin, 10117 Berlin, Germany The intercalated cells (ITCs) of the amygdala have been shown to be critical regulatory components of amygdalar circuits, which control appropriate fear responses. Despite this, the molecular processes guiding ITC development remain poorly understood. Here we establish the zinc finger transcription factor Tshz1 as a marker of ITCs during their migration from the dorsal lateral ganglionic eminence through maturity. Using germline and conditional knock-out (cKO) mouse models, we show that Tshz1 is required for the proper migration and differentiation of ITCs. In the absence of Tshz1, migrating ITC precursors fail to settle in their stereotypical locations encapsulating the lateral amygdala and BLA. Furthermore, they display reductions in the ITC marker Foxp2 and ectopic persistence of the dorsal lateral ganglionic eminence marker Sp8. -
Mediator of DNA Damage Checkpoint 1 (MDC1) Is a Novel Estrogen Receptor Co-Regulator in Invasive 6 Lobular Carcinoma of the Breast 7 8 Evelyn K
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.16.423142; this version posted December 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Running Title: MDC1 co-regulates ER in ILC 2 3 Research article 4 5 Mediator of DNA damage checkpoint 1 (MDC1) is a novel estrogen receptor co-regulator in invasive 6 lobular carcinoma of the breast 7 8 Evelyn K. Bordeaux1+, Joseph L. Sottnik1+, Sanjana Mehrotra1, Sarah E. Ferrara2, Andrew E. Goodspeed2,3, James 9 C. Costello2,3, Matthew J. Sikora1 10 11 +EKB and JLS contributed equally to this project. 12 13 Affiliations 14 1Dept. of Pathology, University of Colorado Anschutz Medical Campus 15 2Biostatistics and Bioinformatics Shared Resource, University of Colorado Comprehensive Cancer Center 16 3Dept. of Pharmacology, University of Colorado Anschutz Medical Campus 17 18 Corresponding author 19 Matthew J. Sikora, PhD.; Mail Stop 8104, Research Complex 1 South, Room 5117, 12801 E. 17th Ave.; Aurora, 20 CO 80045. Tel: (303)724-4301; Fax: (303)724-3712; email: [email protected]. Twitter: 21 @mjsikora 22 23 Authors' contributions 24 MJS conceived of the project. MJS, EKB, and JLS designed and performed experiments. JLS developed models 25 for the project. EKB, JLS, SM, and AEG contributed to data analysis and interpretation. SEF, AEG, and JCC 26 developed and performed informatics analyses. MJS wrote the draft manuscript; all authors read and revised the 27 manuscript and have read and approved of this version of the manuscript. -
Open Dogan Phdthesis Final.Pdf
The Pennsylvania State University The Graduate School Eberly College of Science ELUCIDATING BIOLOGICAL FUNCTION OF GENOMIC DNA WITH ROBUST SIGNALS OF BIOCHEMICAL ACTIVITY: INTEGRATIVE GENOME-WIDE STUDIES OF ENHANCERS A Dissertation in Biochemistry, Microbiology and Molecular Biology by Nergiz Dogan © 2014 Nergiz Dogan Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy August 2014 ii The dissertation of Nergiz Dogan was reviewed and approved* by the following: Ross C. Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology Dissertation Advisor Chair of Committee David S. Gilmour Professor of Molecular and Cell Biology Anton Nekrutenko Professor of Biochemistry and Molecular Biology Robert F. Paulson Professor of Veterinary and Biomedical Sciences Philip Reno Assistant Professor of Antropology Scott B. Selleck Professor and Head of the Department of Biochemistry and Molecular Biology *Signatures are on file in the Graduate School iii ABSTRACT Genome-wide measurements of epigenetic features such as histone modifications, occupancy by transcription factors and coactivators provide the opportunity to understand more globally how genes are regulated. While much effort is being put into integrating the marks from various combinations of features, the contribution of each feature to accuracy of enhancer prediction is not known. We began with predictions of 4,915 candidate erythroid enhancers based on genomic occupancy by TAL1, a key hematopoietic transcription factor that is strongly associated with gene induction in erythroid cells. Seventy of these DNA segments occupied by TAL1 (TAL1 OSs) were tested by transient transfections of cultured hematopoietic cells, and 56% of these were active as enhancers. Sixty-six TAL1 OSs were evaluated in transgenic mouse embryos, and 65% of these were active enhancers in various tissues. -
A Narrative Review of the Intervention Techniques for Childhood Apraxia of Speech Katherine Mahoney
Undergraduate Review Volume 11 Article 15 2015 A Narrative Review of the Intervention Techniques for Childhood Apraxia of Speech Katherine Mahoney Follow this and additional works at: http://vc.bridgew.edu/undergrad_rev Recommended Citation Mahoney, Katherine (2015). A Narrative Review of the Intervention Techniques for Childhood Apraxia of Speech. Undergraduate Review, 11, 81-90. Available at: http://vc.bridgew.edu/undergrad_rev/vol11/iss1/15 This item is available as part of Virtual Commons, the open-access institutional repository of Bridgewater State University, Bridgewater, Massachusetts. Copyright © 2015 Katherine Mahoney in which the brain has difficulty motor planning for speech A Narrative Review of the (McCarty, 2013). The prognosis of CAS is emblematic of the time in which CAS is diagnosed and the intensity of the inter- Intervention Techniques vention (Velleman, 2003, p. 8). for Childhood Apraxia of CAS is a complex speech disorder affected by many factors. Speech Although CAS is a speech disorder that affects the motor planning skills for speech and the coordination of vocal tract muscle movements, the disorder does occur concurrently KATHERINE MAHONEY with phonological difficulties (Velleman, 2003, p. 2). There are many different symptoms that can occur with the disor- hildhood Apraxia of Speech (CAS) is a speech disorder der; however, there are no specific phonological characteristics that affects development of the motor planning skills that must be present in the diagnosis (Bauman-Waengler, 2012, needed for the production of speech. According to p.368). The technical report for CAS produced by the Ameri- C can Speech-Language-Hearing Association lists the following prevalence data, CAS affects approximately two children per 1,000 (Bauman-Waengler, 2012, p.366). -
Evolution of Language: Lessons from the Genome
Psychon Bull Rev DOI 10.3758/s13423-016-1112-8 BRIEF REPORT Evolution of language: Lessons from the genome Simon E. Fisher1,2 # The Author(s) 2016. This article is published with open access at Springerlink.com Abstract The post-genomic era is an exciting time for re- Keywords Genetics and genomics . Speech and language . searchers interested in the biology of speech and language. Evolution . Ancient DNA . Model systems Substantive advances in molecular methodologies have opened up entire vistas of investigation that were not previ- ously possible, or in some cases even imagined. Speculations Our speech and language capacities enable us to acquire vocab- concerning the origins of human cognitive traits are being ularies of many thousands of words, assemble them into a myr- transformed into empirically addressable questions, generat- iad of structured meaningful expressions, and convey thoughts ing specific hypotheses that can be explicitly tested using data to others by mapping meaning to sound, and back again. In the collected from both the natural world and experimental set- twenty-first century, we are witnessing dramatic advances in tings. In this article, I discuss a number of promising lines of deciphering the genetic architecture underlying these fascinat- research in this area. For example, the field has begun to ing aspects of the human condition. By directly borrowing identify genes implicated in speech and language skills, in- state-of-the-art gene mapping approaches from studies of typi- cluding not just disorders but also the normal range of abili- cal biomedical traits, and applying them to scientific studies of ties. Such genes provide powerful entry points for gaining language for the first time, it has become feasible to start tracing insights into neural bases and evolutionary origins, using so- out relevant genetic networks (Graham & Fisher, 2015). -
An Unbiased Reconstruction of the T Helper Cell Type 2 Differentiation Network
bioRxiv preprint doi: https://doi.org/10.1101/196022; this version posted October 4, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. An unbiased reconstruction of the T helper cell type 2 differentiation network 1,3 1 1 1 1 Authors: Johan Henriksson , Xi Chen , Tomás Gomes , Kerstin Meyer , Ricardo Miragaia , 4 1 4 1 1,2,* Ubaid Ullah , Jhuma Pramanik , Riita Lahesmaa , Kosuke Yusa , Sarah A Teichmann Affiliations: 1 Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom 2 EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom 3 Karolinska Institutet, Department. of Biosciences and Nutrition, Hälsovägen 7, Novum, SE-141 83, Huddinge, Sweden 4 Turku Centre for Biotechnology, Tykistokatu 6 FI-20520, Turku, Finland *To whom correspondence should be addressed: [email protected] Tomas: [email protected] Ricardo: [email protected] Ubaid Ullah: [email protected] Jhuma: [email protected] -
FOXP2: a Gene for Language and Speech Hakim Arif
FOXP2: A gene for language and speech Hakim Arif The Dhaka University Journal of Linguistics: Vol. 2 No.3 February, 2009 activities of human beings either partially or at a severe range. Page: 173-184, Published on December 2009 by the Registrar, Dhaka In view of the said development in the field, this paper aims at University ISSN-2075-3098 providing with a brief description of the nature and characteristics of such a human gene called POXP2. FOXP2: A gene for language and speech Nowadays genomics, a new science dealing with the nature of mapping the genome or protein structure of human body, is a 1 Hakim Arif fascinating area of research in biosciences. Scientists in this 1. Associate Professor, Department of Linguistics, University discipline are frequently getting reflections of the genetic of Dhaka mapping of different physio-neuro-cognitive behaviours as well as manners of human beings hence unfolding the Abstract underlying pattern of their polymorphic DNA markers, Establishing the nature of relationship between Linguistics and bio-sciences, especially Genetic Studies is nether an including amino acid sequence of human proteins and its gene imagination today, nor an ambitious project at all, as structure (Botstein & Cherry, 1997). Interestingly, the number psychologists, linguists and genetic scientists started to put of such sequences of human gene mapping is exponentially there keen interest in this endeavour at the beginning of the twentieth-first century. The study of FOXP2-a potential increasing almost every year (Branden & Toose, 1999: 3). human gene responsible for the degeneration of half of the 2. Language and human gene members of famous KE family’s speech and language performances, starts an epoch-making initiative in this Language, one of the basic neuro-cognitive activities of human regard. -
A Set of Regulatory Genes Co-Expressed in Embryonic Human Brain Is Implicated in Disrupted Speech Development
Molecular Psychiatry https://doi.org/10.1038/s41380-018-0020-x ARTICLE A set of regulatory genes co-expressed in embryonic human brain is implicated in disrupted speech development 1 1 1 2 3 Else Eising ● Amaia Carrion-Castillo ● Arianna Vino ● Edythe A. Strand ● Kathy J. Jakielski ● 4,5 6 7 8 9 Thomas S. Scerri ● Michael S. Hildebrand ● Richard Webster ● Alan Ma ● Bernard Mazoyer ● 1,10 4,5 6,11 6,12 13 Clyde Francks ● Melanie Bahlo ● Ingrid E. Scheffer ● Angela T. Morgan ● Lawrence D. Shriberg ● Simon E. Fisher 1,10 Received: 22 September 2017 / Revised: 3 December 2017 / Accepted: 2 January 2018 © The Author(s) 2018. This article is published with open access Abstract Genetic investigations of people with impaired development of spoken language provide windows into key aspects of human biology. Over 15 years after FOXP2 was identified, most speech and language impairments remain unexplained at the molecular level. We sequenced whole genomes of nineteen unrelated individuals diagnosed with childhood apraxia of speech, a rare disorder enriched for causative mutations of large effect. Where DNA was available from unaffected parents, CHD3 SETD1A WDR5 fi 1234567890();,: we discovered de novo mutations, implicating genes, including , and . In other probands, we identi ed novel loss-of-function variants affecting KAT6A, SETBP1, ZFHX4, TNRC6B and MKL2, regulatory genes with links to neurodevelopment. Several of the new candidates interact with each other or with known speech-related genes. Moreover, they show significant clustering within a single co-expression module of genes highly expressed during early human brain development. This study highlights gene regulatory pathways in the developing brain that may contribute to acquisition of proficient speech. -
The MER41 Family of Hervs Is Uniquely Involved in the Immune-Mediated Regulation of Cognition/Behavior-Related Genes
bioRxiv preprint doi: https://doi.org/10.1101/434209; this version posted October 3, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The MER41 family of HERVs is uniquely involved in the immune-mediated regulation of cognition/behavior-related genes: pathophysiological implications for autism spectrum disorders Serge Nataf*1, 2, 3, Juan Uriagereka4 and Antonio Benitez-Burraco 5 1CarMeN Laboratory, INSERM U1060, INRA U1397, INSA de Lyon, Lyon-Sud Faculty of Medicine, University of Lyon, Pierre-Bénite, France. 2 University of Lyon 1, Lyon, France. 3Banque de Tissus et de Cellules des Hospices Civils de Lyon, Hôpital Edouard Herriot, Lyon, France. 4Department of Linguistics and School of Languages, Literatures & Cultures, University of Maryland, College Park, USA. 5Department of Spanish, Linguistics, and Theory of Literature (Linguistics). Faculty of Philology. University of Seville, Seville, Spain * Corresponding author: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/434209; this version posted October 3, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Interferon-gamma (IFNa prototypical T lymphocyte-derived pro-inflammatory cytokine, was recently shown to shape social behavior and neuronal connectivity in rodents. STAT1 (Signal Transducer And Activator Of Transcription 1) is a transcription factor (TF) crucially involved in the IFN pathway. -
The Untold Stories of the Speech Gene, the FOXP2 Cancer Gene
www.Genes&Cancer.com Genes & Cancer, Vol. 9 (1-2), January 2018 The untold stories of the speech gene, the FOXP2 cancer gene Maria Jesus Herrero1,* and Yorick Gitton2,* 1 Center for Neuroscience Research, Children’s National Medical Center, NW, Washington, DC, USA 2 Sorbonne University, INSERM, CNRS, Vision Institute Research Center, Paris, France * Both authors contributed equally to this work Correspondence to: Yorick Gitton, email: [email protected] Keywords: FOXP2 factor, oncogene, cancer, prognosis, language Received: March 01, 2018 Accepted: April 02, 2018 Published: April 18, 2018 Copyright: Herrero and Gitton et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT FOXP2 encodes a transcription factor involved in speech and language acquisition. Growing evidence now suggests that dysregulated FOXP2 activity may also be instrumental in human oncogenesis, along the lines of other cardinal developmental transcription factors such as DLX5 and DLX6 [1–4]. Several FOXP family members are directly involved during cancer initiation, maintenance and progression in the adult [5–8]. This may comprise either a pro- oncogenic activity or a deficient tumor-suppressor role, depending upon cell types and associated signaling pathways. While FOXP2 is expressed in numerous cell types, its expression has been found to be down-regulated in breast cancer [9], hepatocellular carcinoma [8] and gastric cancer biopsies [10]. Conversely, overexpressed FOXP2 has been reported in multiple myelomas, MGUS (Monoclonal Gammopathy of Undetermined Significance), several subtypes of lymphomas [5,11], as well as in neuroblastomas [12] and ERG fusion-negative prostate cancers [13]. -
Molecular Evolution of FOXP2, a Gene Involved in Speech and Language
letters to nature 13. Pfanner, N. & Geissler, A. Versatility of the mitochondrial protein import machinery. Nature Rev. Mol. disorder. Thus, two functional copies of FOXP2 seem to be Cell. Biol. 2, 339–349 (2001). 14. Winzeler, E. A. et al. Functional characterization of the S. cerevisiae genome by gene deletion and required for acquisition of normal spoken language. We parallel analysis. Science 285, 901–906 (1999). sequenced the complementary DNAs that encode the FOXP2 15. Bukau, B. & Horwich, A. L. The Hsp70 and Hsp60 chaperone machines. Cell 92, 351–366 (1998). protein in the chimpanzee, gorilla, orang-utan, rhesus macaque 16. Lill, R. & Kispal, G. Maturation of cellular Fe-S proteins: an essential function of mitochondria. Trends and mouse, and compared them with the human cDNA. We also Biochem. Sci. 25, 352–356 (2000). 17. Hollister, W. S. et al. Development and ultrastructure of Trachipleistophora hominis n.g., n.sp. after in investigated intraspecific variation of the human FOXP2 gene. vitro isolation from an AIDS patient and inoculation into athymic mice. Parasitology 112, 143–154 Here we show that human FOXP2 contains changes in amino- (1996). acid coding and a pattern of nucleotide polymorphism, which 18. Huynen, M. A., Snel, B., Bork, P. & Gibson, T. J. The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly. Hum. Mol. Genet. 10, 2463–2468 (2001). strongly suggest that this gene has been the target of selection 19. Akhmanova, A. et al. A hydrogenosome with a genome. Nature 396, 527–528 (1998). during recent human evolution. 20. van Der Giezen, M. -
What Can Mice Tell Us About Foxp2 Function?
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by MPG.PuRe Available online at www.sciencedirect.com ScienceDirect What can mice tell us about Foxp2 function? 1 2,3 Catherine A French and Simon E Fisher Disruptions of the FOXP2 gene cause a rare speech and Contemporary findings from neurobiology and cognitive language disorder, a discovery that has opened up novel neuroscience indicate that speech and language skills avenues for investigating the relevant neural pathways. depend on the activities of multiple sets of distributed FOXP2 shows remarkably high conservation of sequence neural circuits, both cortical and subcortical. It has been and neural expression in diverse vertebrates, suggesting that proposed that our unique human abilities arose through studies in other species are useful in elucidating its functions. adaptive evolution of pre-existing systems (neural, phys- Here we describe how investigations of mice that carry iological and anatomical) brought together in novel con- disruptions of Foxp2 provide insights at multiple levels: figurations [5,6]. This hypothesis is supported by existing molecules, cells, circuits and behaviour. Work thus far has molecular data. Thus far, genes that have been connected implicated the gene in key processes including neurite to aspects of speech and language have also been found in outgrowth, synaptic plasticity, sensorimotor integration and other species, often with surprisingly deep evolutionary motor-skill learning. histories [5]. Certain aspects of the neural infrastructure Addresses supporting spoken language may be particularly tractable 1 Champalimaud Neuroscience Programme, Champalimaud Centre for for studying in an evolutionary framework. For example, the Unknown, Lisbon, Portugal 2 learning to speak depends crucially on auditory-guided Language and Genetics Department, Max Planck Institute for vocal learning; the acquisition of a vocal repertoire is Psycholinguistics, Nijmegen, The Netherlands 3 based on hearing vocalisations of a conspecific.