UNDERSTANDING the INTERACTION BETWEEN GRAIN BOUNDARIES and PRECIPITATES in Ni-Al USING MOLECULAR DYNAMICS
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Quartz Grainsize Evolution During Dynamic Recrystallization Across a Natural Shear Zone Boundary
Journal of Structural Geology 109 (2018) 120–126 Contents lists available at ScienceDirect Journal of Structural Geology journal homepage: www.elsevier.com/locate/jsg Quartz grainsize evolution during dynamic recrystallization across a natural T shear zone boundary ∗ Haoran Xia , John P. Platt Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089-0740, USA ARTICLE INFO ABSTRACT Keywords: Although it is widely accepted that grainsize reduction by dynamic recrystallization can lead to strain locali- Dynamic recrystallization zation, the details of the grainsize evolution during dynamic recrystallization remain unclear. We investigated Bulge the bulge size and grainsizes of quartz at approximately the initiation and the completion stages of bulging Subgrain recrystallization across the upper boundary of a 500 m thick mylonite zone above the Vincent fault in the San Grainsize evolution Gabriel Mountains, southern California. Within uncertainty, the average bulge size of quartz, 4.7 ± 1.5 μm, is Vincent fault the same as the recrystallized grainsize, 4.5 ± 1.5 μm, at the incipient stage of dynamic recrystallization, and also the same within uncertainties as the recrystallized grainsize when dynamic recrystallization is largely complete, 4.7 ± 1.3 μm. These observations indicate that the recrystallized grainsize is controlled by the nu- cleation process and does not change afterwards. It is also consistent with the experimental finding that the quartz recrystallized grainsize paleopiezometer is independent of -
Using Grain Boundary Irregularity to Quantify Dynamic Recrystallization in Ice
Acta Materialia 209 (2021) 116810 Contents lists available at ScienceDirect Acta Materialia journal homepage: www.elsevier.com/locate/actamat Using grain boundary irregularity to quantify dynamic recrystallization in ice ∗ Sheng Fan a, , David J. Prior a, Andrew J. Cross b,c, David L. Goldsby b, Travis F. Hager b, Marianne Negrini a, Chao Qi d a Department of Geology, University of Otago, Dunedin, New Zealand b Department of Earth and Environmental Science, University of Pennsylvania, Philadelphia, PA, United States c Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA, United States d Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China a r t i c l e i n f o a b s t r a c t Article history: Dynamic recrystallization is an important mechanical weakening mechanism during the deformation of Received 24 December 2020 ice, yet we currently lack robust quantitative tools for identifying recrystallized grains in the “migration” Revised 7 March 2021 recrystallization regime that dominates ice deformation at temperatures close to the ice melting point. Accepted 10 March 2021 Here, we propose grain boundary irregularity as a quantitative means for discriminating between recrys- Available online 15 March 2021 tallized (high sphericity, low irregularity) and remnant (low sphericity, high irregularity) grains. To this Keywords: end, we analysed cryogenic electron backscatter diffraction (cryo-EBSD) data of deformed polycrystalline High-temperature deformation ice, to quantify dynamic recrystallization using grain boundary irregularity statistics. Grain boundary ir- Grain boundary irregularity regularity has an inverse relationship with a sphericity parameter, , defined as the ratio of grain area Dynamic recrystallization and grain perimeter, divided by grain radius in 2-D so that the measurement is grain size independent. -
Grain Boundary Loops in Graphene
Grain Boundary Loops in Graphene Eric Cockayne,1§ Gregory M. Rutter,2,3 Nathan P. Guisinger,3* Jason N. Crain,3 Phillip N. First,2 and Joseph A. Stroscio3§ 1Ceramics Division, NIST, Gaithersburg, MD 20899 2School of Physics, Georgia Institute of Technology, Atlanta, GA 30332 3Center for Nanoscale Science and Technology, NIST, Gaithersburg, MD 20899 Topological defects can affect the physical properties of graphene in unexpected ways. Harnessing their influence may lead to enhanced control of both material strength and electrical properties. Here we present a new class of topological defects in graphene composed of a rotating sequence of dislocations that close on themselves, forming grain boundary loops that either conserve the number of atoms in the hexagonal lattice or accommodate vacancy/interstitial reconstruction, while leaving no unsatisfied bonds. One grain boundary loop is observed as a “flower” pattern in scanning tunneling microscopy (STM) studies of epitaxial graphene grown on SiC(0001). We show that the flower defect has the lowest energy per dislocation core of any known topological defect in graphene, providing a natural explanation for its growth via the coalescence of mobile dislocations. §Authors to whom correspondence should be addressed:[email protected], [email protected] * Present address: Argonne National Laboratory, Argonne, IL 1 I. Introduction The symmetry of the graphene honeycomb lattice is a key element for determining many of graphene's unique electronic properties. The sub-lattice symmetry of graphene gives rise to its low energy electronic structure, which is characterized by linear energy-momentum dispersion.1 The spinor-like eigenstates of graphene lead to one of its celebrated properties, reduced backscattering (i.e., high carrier mobility), which results from pseudo-spin conservation in scattering within a smooth disorder potential.2,3 Topological lattice defects break the sublattice symmetry, allowing insight into the fundamental quantum properties of graphene. -
Grain Boundary Phases in Bcc Metals
Nanoscale Grain boundary phases in bcc metals Journal: Nanoscale Manuscript ID NR-ART-01-2018-000271.R1 Article Type: Paper Date Submitted by the Author: 06-Mar-2018 Complete List of Authors: Frolov, Timofey; Lawrence Livermore National Laboratory, Setyawan, Wahyu; Pacific Northwest National Laboratory, Kurtz, Richard; Pacific Northwest National Laboratory Marian, Jaime ; University of California Los Angeles Oganov, Artem; Stony Brook University Rudd, Robert; Lawrence Livermore National Laboratory Zhu, Qiang; University of Nevada Las Vegas Page 1 of 34 Nanoscale Grain boundary phases in bcc metals T. Frolov,1 W. Setyawan,2 R. J. Kurtz,2 J. Marian,3 A. R. Oganov,4, ∗ R. E. Rudd,1 and Q. Zhu5 1Lawrence Livermore National Laboratory, Livermore, California 94550, USA 2Pacific Northwest National Laboratory, P. O. Box 999, Richland, Washington 99352, USA 3Department of Materials Science and Engineering, University of California Los Angeles, Los Angeles, California 90095, USA 4Stony Brook University, Stony Brook, New York 11794, USA 5Department of Physics and Astronomy, High Pressure Science and Engineering Center, University of Nevada, Las Vegas, Nevada 89154, USA Abstract We report a computational discovery of novel grain boundary structures and multiple grain boundary phases in elemental body-centered cubic (bcc) metals represented by tungsten, tantalum and molybde- num. While grain boundary structures created by the γ-surface method as a union of two perfect half crystals have been studied extensively, it is known that the method has limitations and does not always predict the correct ground states. Here, we use a newly developed computational tool, based on evolu- tionary algorithms, to perform a grand-canonical search of a high-angle symmetric tilt and twist bound- aries in tungsten, and we find new ground states and multiple phases that cannot be described using the conventional structural unit model. -
Grain Boundary Properties of Elemental Metals
Acta Materialia 186 (2020) 40–49 Contents lists available at ScienceDirect Acta Materialia journal homepage: www.elsevier.com/locate/actamat Full length article Grain boundary properties of elemental metals Hui Zheng a,1, Xiang-Guo Li a,1, Richard Tran a, Chi Chen a, Matthew Horton b, ∗ Donald Winston b, Kristin Aslaug Persson b,c, Shyue Ping Ong a, a Department of NanoEngineering, University of California San Diego, 9500 Gilman Dr, Mail Code 0448, La Jolla, CA 92093-0448, United States b Energy Technologies Area, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States c Department of Materials Science & Engineering, University of California Berkeley, Berkeley, CA 94720-1760, United States a r t i c l e i n f o a b s t r a c t Article history: The structure and energy of grain boundaries (GBs) are essential for predicting the properties of polycrys- Received 26 July 2019 talline materials. In this work, we use high-throughput density functional theory calculations workflow Revised 13 December 2019 to construct the Grain Boundary Database (GBDB), the largest database of DFT-computed grain boundary Accepted 14 December 2019 properties to date. The database currently encompasses 327 GBs of 58 elemental metals, including 10 Available online 19 December 2019 common twist or symmetric tilt GBs for body-centered cubic (bcc) and face-centered cubic (fcc) systems Keywords: and the 7 [0 0 01] twist GB for hexagonal close-packed (hcp) systems. In particular, we demonstrate a Grain boundary novel scaled-structural template approach for HT GB calculations, which reduces the computational cost DFT of converging GB structures by a factor of ~ 3–6. -
Electronic Properties of Grains and Grain Boundaries in Graphene Grown by Chemical Vapor Deposition
Electronic properties of grains and grain boundaries in graphene grown by chemical vapor deposition Luis A. Jaureguia,b, Helin Caoa,c, Wei Wud,e, Qingkai Yud,e,f, Yong P. Chenc,a,b,* a Birck Nanotechnology Center, Purdue University, West Lafayette, IN 47907, USA b School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN 47907, USA c Department of Physics, Purdue University, West Lafayette, IN 47907, USA d Center for Advanced Materials, University of Houston, Houston, TX 77204, USA e Department of Electrical and Computer Engineering, University of Houston, Houston, TX 77204, USA f Ingram School of Engineering and Materials Science, Engineering and Commercialization Program, Texas State University, San Marcos, TX 78666, USA ABSTRACT We synthesize hexagonal shaped single-crystal graphene, with edges parallel to the zig-zag orientations, by ambient pressure CVD on polycrystalline Cu foils. We measure the electronic properties of such grains as well as of individual graphene grain boundaries, formed when two grains merged during the growth. The grain boundaries are visualized using Raman mapping of the D band intensity, and we show that individual boundaries between coalesced grains impede electrical transport in graphene and induce prominent weak localization, indicative of intervalley scattering in graphene. * Corresponding author. Tel.: +1 765 494 0947; Fax: +1 765 494 0706 E-mail address: [email protected] (Y. P. Chen) 1. Introduction Since its discovery, graphene has attracted a lot of attention in many fields. Graphene’s potential applications have motivated the development of large-scale synthesis of graphene grown by several methods, including graphitization of SiC surfaces [1, 2] and chemical vapor deposition (CVD) on transition metals such as Ni [3-5] and Cu [6]. -
Emission of Dislocations from Grain Boundaries and Its Role in Nanomaterials
crystals Review Emission of Dislocations from Grain Boundaries and Its Role in Nanomaterials James C. M. Li 1,*, C. R. Feng 2 and Bhakta B. Rath 2 1 Department of Mechanical Engineering, University of Rochester, Rochester, NY 14627, USA 2 U.S. Naval Research Laboratory, 4555 Overlook Ave SW, Washington, DC 20375, USA; [email protected] (C.R.F.); [email protected] (B.B.R.) * Correspondence: [email protected] Abstract: The Frank-Read model, as a way of generating dislocations in metals and alloys, is widely accepted. In the early 1960s, Li proposed an alternate mechanism. Namely, grain boundary sources for dislocations, with the aim of providing a different model for the Hall-Petch relation without the need of dislocation pile-ups at grain boundaries, or Frank-Read sources inside the grain. This article provides a review of his model, and supporting evidence for grain boundaries or interfacial sources of dislocations, including direct observations using transmission electron microscopy. The Li model has acquired new interest with the recent development of nanomaterial and multilayers. It is now known that nanocrystalline metals/alloys show a behavior different from conventional polycrystalline materials. The role of grain boundary sources in nanomaterials is reviewed briefly. Keywords: dislocation emission; grain boundaries; nanomaterials; Hall-Petch relation; metals and alloys 1. Introduction To explain the properties of crystalline aggregates, such as crystal plasticity, Taylor [1,2] provided a theoretical construct of line defects in the atomic scale of the crystal lattice. Citation: Li, J.C.M.; Feng, C.R.; With the use of the electron microscope, the sample presence of dislocations validated Rath, B.B. -
An Overview on the Libxc Library of Density Functional Approximations
An overview on the Libxc library of density functional approximations Susi Lehtola Molecular Sciences Software Institute at Virginia Tech 2 June 2021 Outline Why Libxc? Recap on DFT What is Libxc? Using Libxc A look under the hood Wrapup GPAW 2021: Users' and Developers' Meeting Susi Lehtola Why Libxc? 2/28 Why Libxc? There are many approximations for the exchange-correlation functional. But, most programs I ... only implement a handful (sometimes 5, typically 10-15) I ... and the implementations may be buggy / non-standard GPAW 2021: Users' and Developers' Meeting Susi Lehtola Why Libxc? 3/28 Why Libxc, cont'd This leads to issues with reproducibility I chemists and physicists do not traditionally use the same functionals! Outdated(?) stereotype: B3LYP vs PBE I how to reproduce a calculation performed with another code? GPAW 2021: Users' and Developers' Meeting Susi Lehtola Why Libxc? 4/28 Why Libxc, cont'd The issue is compounded by the need for backwards and forwards compatibility: how can one I reproduce old calculations from the literature done with a now-obsolete functional (possibly with a program that is proprietary / no longer available)? I use a newly developed functional in an old program? GPAW 2021: Users' and Developers' Meeting Susi Lehtola Why Libxc? 5/28 Why Libxc, cont'd A standard implementation is beneficial! I no need to keep reinventing (and rebuilding) the wheel I use same collection of density functionals in all programs I new functionals only need to be implemented in one place I broken/buggy functionals only need to be fixed in one place I same implementation can be used across numerical approaches, e.g. -
Development of Highly Transparent Zirconia Ceramics
11 Development of highly transparent zirconia ceramics Isao Yamashita *1 Masayuki Kudo *1 Koji Tsukuma *1 Highly transparent zirconia ceramics were developed and their optical and mechanical properties were comprehensively studied. A low optical haze value (H<1.0 %), defined as the diffuse transmission divided by the total forward transmission, was achieved by using high-purity powder and a novel sintering process. Theoretical in-line transmission (74 %) was observed from the ultraviolet–visible region up to the infra-red region; an absorption edge was found at 350 nm and 8 µm for the ultraviolet and infrared region, respectively. A colorless sintered body having a high refractive index (n d = 2.23) and a high Abbe’s number (νd = 27.8) was obtained. A remarkably large dielectric constant (ε = 32.7) with low dielectric loss (tanδ = 0.006) was found. Transparent zirconia ceramics are candidates for high-refractive index lenses, optoelectric devices and infrared windows. Transparent zirconia ceramics also possess excellent mechanical properties. Various colored transparent zirconia can be used as exterior components and for complex-shaped gemstones. fabricating transparent cubic zirconia ceramics.9,13-19 1.Introduction Transparent zirconia ceramics using titanium oxide as Transparent and translucent ceramics have been a sintering additive were firstly reported by Tsukuma.15 studied extensively ever since the seminal work on However, the sintered body had poor transparency translucent alumina polycrystal by Coble in the 1960s.1 and low mechanical strength. In this study, highly Subsequently, researchers have conducted many transparent zirconia ceramics of high strength were studies to develop transparent ceramics such as MgO,2 developed. -
Propagation of Crystal Defects During Directional Solidification of Silicon
crystals Article Propagation of Crystal Defects during Directional Solidification of Silicon via Induction of Functional Defects Patricia Krenckel 1,* , Yusuke Hayama 2, Florian Schindler 1, Theresa Trötschler 1, Stephan Riepe 1 and Noritaka Usami 2 1 Fraunhofer Institute for Solar Energy Systems ISE, Heidenhofstr. 2, D-79110 Freiburg, Germany; [email protected] (F.S.); [email protected] (T.T.); [email protected] (S.R.) 2 Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan; [email protected] (Y.H.); [email protected] (N.U.) * Correspondence: [email protected] Abstract: The introduction of directional solidified cast mono silicon promised a combination of the cheaper production via a casting process with monocrystalline material quality, but has been struggling with high concentration of structural defects. The SMART approach uses functional defects to maintain the monocrystalline structure with low dislocation densities. In this work, the feasibility of the SMART approach is shown for larger ingots. A G2 sized crystal with SMART and cast mono silicon parts has been analyzed regarding the structural defects via optical analysis, crystal orientation, and etch pit measurements. Photoluminescence measurements on passivated and processed samples were used for characterization of the electrical material quality. The SMART approach has successfully resulted in a crystal with mono area share over 90% and a confinement of dislocation structures in the functional defect region over the whole ingot height compared to a mono area share of down to 50% and extending dislocation tangles in the standard cast mono Si. Citation: Krenckel, P.; Hayama, Y.; Cellular structures in photoluminescence measurements could be attributed to cellular dislocation Schindler, F.; Trötschler, T.; Riepe, S.; patterns. -
ADP-Ribose) Polymerase-1 Catalytic Pocket Using Autogrow4, a Genetic Algorithm for De Novo Design
Targeting the Poly (ADP-Ribose) Polymerase-1 Catalytic Pocket Using AutoGrow4, a Genetic Algorithm for De Novo Design by Jacob Oscar Spiegel Bachelor of Engineering in Biomedical Engineering, State University of New York at Stony Brook, 2013 Submitted to the Graduate Faculty of the Dietrich School of Arts and Sciences in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Pittsburgh 2020 Committee Page UNIVERSITY OF PITTSBURGH DIETRICH SCHOOL OF ARTS AND SCIENCES This dissertation was presented by Jacob Oscar Spiegel It was defended on March 10, 2020 and approved by Dr. Andrew VanDemark, Associate Professor, Department of Biological Sciences Dr. Jeffrey Lawrence, Professor and Chair, Department of Biological Sciences Dr. Bennett Van Houten, Professor, Department of Pharmacology and Chemical Biology Dissertation Director: Dr. Jacob Durrant, Assistant Professor, Department of Biological Sciences ii Copyright © by Jacob Oscar Spiegel 2020 iii Targeting the Poly (ADP-Ribose) Polymerase-1 Catalytic Pocket Using AutoGrow4, a Genetic Algorithm for De Novo Design Jacob Oscar Spiegel, Ph.D. University of Pittsburgh, 2020 AutoGrow4 is a free and open-source program for de novo drug design that uses a genetic algorithm (GA) to create novel predicted small-molecule ligands for a given protein target without the constraints of a finite, pre-defined virtual library. By leveraging recent computational and cheminformatic advancements, AutoGrow4 is faster, more stable, and more modular than previous versions. Features such as docking-software compatibility, chemical filters, multithreading options, and selection methods have been expanded to support a wide range of user needs. This dissertation will cover the development and validation of AutoGrow4, as well as its application to poly (ADP-ribose) polymerase-1 (PARP-1). -
Enforced Presentation of an Extrahelical Guanine to the Lesion Recognition Pocket of Human 8- Oxoguanine Glycosylase, Hogg1
Enforced Presentation of an Extrahelical Guanine to the Lesion Recognition Pocket of Human 8- Oxoguanine Glycosylase, hOGG1 The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Crenshaw, Charisse M., Kwangho Nam, Kimberly Oo, Peter S. Kutchukian, Brian R. Bowman, Martin Karplus, and Gregory L. Verdine. 2012. “Enforced Presentation of an Extrahelical Guanine to the Lesion Recognition Pocket of Human 8-Oxoguanine Glycosylase, HOGG1.” Journal of Biological Chemistry287 (30): 24916–28. https:// doi.org/10.1074/jbc.M111.316497. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:41511240 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 287, NO. 30, pp. 24916–24928, July 20, 2012 © 2012 by The American Society for Biochemistry and Molecular Biology, Inc. Published in the U.S.A. Enforced Presentation of an Extrahelical Guanine to the Lesion Recognition Pocket of Human 8-Oxoguanine Glycosylase, hOGG1*□S Received for publication, October 25, 2011, and in revised form, March 17, 2012 Published, JBC Papers in Press, April 16, 2012, DOI 10.1074/jbc.M111.316497 Charisse M. Crenshaw‡¶, Kwangho Nam§¶, Kimberly Oo§, Peter S. Kutchukian§¶, Brian R. Bowman§¶, Martin Karplus§ʈ, and Gregory L. Verdine§¶**1 From the Departments