Notes on the Poisson Point Process
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Cox Process Representation and Inference for Stochastic Reaction-Diffusion Processes
Edinburgh Research Explorer Cox process representation and inference for stochastic reaction-diffusion processes Citation for published version: Schnoerr, D, Grima, R & Sanguinetti, G 2016, 'Cox process representation and inference for stochastic reaction-diffusion processes', Nature Communications, vol. 7, 11729. https://doi.org/10.1038/ncomms11729 Digital Object Identifier (DOI): 10.1038/ncomms11729 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Nature Communications General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 02. Oct. 2021 ARTICLE Received 16 Dec 2015 | Accepted 26 Apr 2016 | Published 25 May 2016 DOI: 10.1038/ncomms11729 OPEN Cox process representation and inference for stochastic reaction–diffusion processes David Schnoerr1,2,3, Ramon Grima1,3 & Guido Sanguinetti2,3 Complex behaviour in many systems arises from the stochastic interactions of spatially distributed particles or agents. Stochastic reaction–diffusion processes are widely used to model such behaviour in disciplines ranging from biology to the social sciences, yet they are notoriously difficult to simulate and calibrate to observational data. -
Poisson Representations of Branching Markov and Measure-Valued
The Annals of Probability 2011, Vol. 39, No. 3, 939–984 DOI: 10.1214/10-AOP574 c Institute of Mathematical Statistics, 2011 POISSON REPRESENTATIONS OF BRANCHING MARKOV AND MEASURE-VALUED BRANCHING PROCESSES By Thomas G. Kurtz1 and Eliane R. Rodrigues2 University of Wisconsin, Madison and UNAM Representations of branching Markov processes and their measure- valued limits in terms of countable systems of particles are con- structed for models with spatially varying birth and death rates. Each particle has a location and a “level,” but unlike earlier con- structions, the levels change with time. In fact, death of a particle occurs only when the level of the particle crosses a specified level r, or for the limiting models, hits infinity. For branching Markov pro- cesses, at each time t, conditioned on the state of the process, the levels are independent and uniformly distributed on [0,r]. For the limiting measure-valued process, at each time t, the joint distribu- tion of locations and levels is conditionally Poisson distributed with mean measure K(t) × Λ, where Λ denotes Lebesgue measure, and K is the desired measure-valued process. The representation simplifies or gives alternative proofs for a vari- ety of calculations and results including conditioning on extinction or nonextinction, Harris’s convergence theorem for supercritical branch- ing processes, and diffusion approximations for processes in random environments. 1. Introduction. Measure-valued processes arise naturally as infinite sys- tem limits of empirical measures of finite particle systems. A number of ap- proaches have been developed which preserve distinct particles in the limit and which give a representation of the measure-valued process as a transfor- mation of the limiting infinite particle system. -
From Time Series to Stochastics: a Theoretical Framework with Applications on Time Scales Spanning from Microseconds to Megayears
Orlob International Symposium 2016 University California Davis 20-21 June 2016 From time series to stochastics: A theoretical framework with applications on time scales spanning from microseconds to megayears Demetris Koutsoyiannis & Panayiotis Dimitriadis Department of Water Resources and Environmental Engineering School of Civil Engineering National Technical University of Athens, Greece ([email protected], http://www.itia.ntua.gr/dk/) Presentation available online: http://www.itia.ntua.gr/en/docinfo/1618/ Part 1: On names and definitions D. Koutsoyiannis & P. Dimitriadis, From time series to stochastics 1 Schools on names and definitions The poetic school What’s in a name? That which we call a rose, By any other name would smell as sweet. —William Shakespeare, “Romeo and Juliet” (Act 2, scene 2) The philosophico-epistemic school Ἀρχή σοφίας ὀνομάτων ἐπίσκεψις (The beginning of wisdom is the visiting (inspection) of names) ―Attributed to Antisthenes of Athens, founder of Cynic philosophy Ἀρχὴ παιδεύσεως ἡ τῶν ὀνομάτων ἐπίσκεψις” (The beginning of education is the inspection of names) ―Attributed to Socrates by Epictetus, Discourses, Ι.17,12, The beginning of wisdom is to call things by their proper name. ―Chinese proverb paraphrasing Confucius’s quote “If names be not correct, language is not in accordance with the truth of things.” D. Koutsoyiannis & P. Dimitriadis, From time series to stochastics 2 On names and definitions (contd.) The philosophico-epistemic school (contd.) When I name an object with a word, I thereby assert its existence.” —Andrei Bely, symbolist poet and former mathematics student of Dmitri Egorov, in his essay “The Magic of Words” “Nommer, c’est avoir individu” (to name is to have individuality). -
Introduction to Lévy Processes
Introduction to Lévy Processes Huang Lorick [email protected] Document type These are lecture notes. Typos, errors, and imprecisions are expected. Comments are welcome! This version is available at http://perso.math.univ-toulouse.fr/lhuang/enseignements/ Year of publication 2021 Terms of use This work is licensed under a Creative Commons Attribution 4.0 International license: https://creativecommons.org/licenses/by/4.0/ Contents Contents 1 1 Introduction and Examples 2 1.1 Infinitely divisible distributions . 2 1.2 Examples of infinitely divisible distributions . 2 1.3 The Lévy Khintchine formula . 4 1.4 Digression on Relativity . 6 2 Lévy processes 8 2.1 Definition of a Lévy process . 8 2.2 Examples of Lévy processes . 9 2.3 Exploring the Jumps of a Lévy Process . 11 3 Proof of the Levy Khintchine formula 19 3.1 The Lévy-Itô Decomposition . 19 3.2 Consequences of the Lévy-Itô Decomposition . 21 3.3 Exercises . 23 3.4 Discussion . 23 4 Lévy processes as Markov Processes 24 4.1 Properties of the Semi-group . 24 4.2 The Generator . 26 4.3 Recurrence and Transience . 28 4.4 Fractional Derivatives . 29 5 Elements of Stochastic Calculus with Jumps 31 5.1 Example of Use in Applications . 31 5.2 Stochastic Integration . 32 5.3 Construction of the Stochastic Integral . 33 5.4 Quadratic Variation and Itô Formula with jumps . 34 5.5 Stochastic Differential Equation . 35 Bibliography 38 1 Chapter 1 Introduction and Examples In this introductive chapter, we start by defining the notion of infinitely divisible distributions. We then give examples of such distributions and end this chapter by stating the celebrated Lévy-Khintchine formula. -
Poisson Processes Stochastic Processes
Poisson Processes Stochastic Processes UC3M Feb. 2012 Exponential random variables A random variable T has exponential distribution with rate λ > 0 if its probability density function can been written as −λt f (t) = λe 1(0;+1)(t) We summarize the above by T ∼ exp(λ): The cumulative distribution function of a exponential random variable is −λt F (t) = P(T ≤ t) = 1 − e 1(0;+1)(t) And the tail, expectation and variance are P(T > t) = e−λt ; E[T ] = λ−1; and Var(T ) = E[T ] = λ−2 The exponential random variable has the lack of memory property P(T > t + sjT > t) = P(T > s) Exponencial races In what follows, T1;:::; Tn are independent r.v., with Ti ∼ exp(λi ). P1: min(T1;:::; Tn) ∼ exp(λ1 + ··· + λn) . P2 λ1 P(T1 < T2) = λ1 + λ2 P3: λi P(Ti = min(T1;:::; Tn)) = λ1 + ··· + λn P4: If λi = λ and Sn = T1 + ··· + Tn ∼ Γ(n; λ). That is, Sn has probability density function (λs)n−1 f (s) = λe−λs 1 (s) Sn (n − 1)! (0;+1) The Poisson Process as a renewal process Let T1; T2;::: be a sequence of i.i.d. nonnegative r.v. (interarrival times). Define the arrival times Sn = T1 + ··· + Tn if n ≥ 1 and S0 = 0: The process N(t) = maxfn : Sn ≤ tg; is called Renewal Process. If the common distribution of the times is the exponential distribution with rate λ then process is called Poisson Process of with rate λ. Lemma. N(t) ∼ Poisson(λt) and N(t + s) − N(s); t ≥ 0; is a Poisson process independent of N(s); t ≥ 0 The Poisson Process as a L´evy Process A stochastic process fX (t); t ≥ 0g is a L´evyProcess if it verifies the following properties: 1. -
Probabilistic and Geometric Methods in Last Passage Percolation
Probabilistic and geometric methods in last passage percolation by Milind Hegde A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Mathematics in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Alan Hammond, Co‐chair Professor Shirshendu Ganguly, Co‐chair Professor Fraydoun Rezakhanlou Professor Alistair Sinclair Spring 2021 Probabilistic and geometric methods in last passage percolation Copyright 2021 by Milind Hegde 1 Abstract Probabilistic and geometric methods in last passage percolation by Milind Hegde Doctor of Philosophy in Mathematics University of California, Berkeley Professor Alan Hammond, Co‐chair Professor Shirshendu Ganguly, Co‐chair Last passage percolation (LPP) refers to a broad class of models thought to lie within the Kardar‐ Parisi‐Zhang universality class of one‐dimensional stochastic growth models. In LPP models, there is a planar random noise environment through which directed paths travel; paths are as‐ signed a weight based on their journey through the environment, usually by, in some sense, integrating the noise over the path. For given points y and x, the weight from y to x is defined by maximizing the weight over all paths from y to x. A path which achieves the maximum weight is called a geodesic. A few last passage percolation models are exactly solvable, i.e., possess what is called integrable structure. This gives rise to valuable information, such as explicit probabilistic resampling prop‐ erties, distributional convergence information, or one point tail bounds of the weight profile as the starting point y is fixed and the ending point x varies. -
Partnership As Experimentation: Business Organization and Survival in Egypt, 1910–1949
Yale University EliScholar – A Digital Platform for Scholarly Publishing at Yale Discussion Papers Economic Growth Center 5-1-2017 Partnership as Experimentation: Business Organization and Survival in Egypt, 1910–1949 Cihan Artunç Timothy Guinnane Follow this and additional works at: https://elischolar.library.yale.edu/egcenter-discussion-paper-series Recommended Citation Artunç, Cihan and Guinnane, Timothy, "Partnership as Experimentation: Business Organization and Survival in Egypt, 1910–1949" (2017). Discussion Papers. 1065. https://elischolar.library.yale.edu/egcenter-discussion-paper-series/1065 This Discussion Paper is brought to you for free and open access by the Economic Growth Center at EliScholar – A Digital Platform for Scholarly Publishing at Yale. It has been accepted for inclusion in Discussion Papers by an authorized administrator of EliScholar – A Digital Platform for Scholarly Publishing at Yale. For more information, please contact [email protected]. ECONOMIC GROWTH CENTER YALE UNIVERSITY P.O. Box 208269 New Haven, CT 06520-8269 http://www.econ.yale.edu/~egcenter Economic Growth Center Discussion Paper No. 1057 Partnership as Experimentation: Business Organization and Survival in Egypt, 1910–1949 Cihan Artunç University of Arizona Timothy W. Guinnane Yale University Notes: Center discussion papers are preliminary materials circulated to stimulate discussion and critical comments. This paper can be downloaded without charge from the Social Science Research Network Electronic Paper Collection: https://ssrn.com/abstract=2973315 Partnership as Experimentation: Business Organization and Survival in Egypt, 1910–1949 Cihan Artunç⇤ Timothy W. Guinnane† This Draft: May 2017 Abstract The relationship between legal forms of firm organization and economic develop- ment remains poorly understood. Recent research disputes the view that the joint-stock corporation played a crucial role in historical economic development, but retains the view that the costless firm dissolution implicit in non-corporate forms is detrimental to investment. -
A Model of Gene Expression Based on Random Dynamical Systems Reveals Modularity Properties of Gene Regulatory Networks†
A Model of Gene Expression Based on Random Dynamical Systems Reveals Modularity Properties of Gene Regulatory Networks† Fernando Antoneli1,4,*, Renata C. Ferreira3, Marcelo R. S. Briones2,4 1 Departmento de Informática em Saúde, Escola Paulista de Medicina (EPM), Universidade Federal de São Paulo (UNIFESP), SP, Brasil 2 Departmento de Microbiologia, Imunologia e Parasitologia, Escola Paulista de Medicina (EPM), Universidade Federal de São Paulo (UNIFESP), SP, Brasil 3 College of Medicine, Pennsylvania State University (Hershey), PA, USA 4 Laboratório de Genômica Evolutiva e Biocomplexidade, EPM, UNIFESP, Ed. Pesquisas II, Rua Pedro de Toledo 669, CEP 04039-032, São Paulo, Brasil Abstract. Here we propose a new approach to modeling gene expression based on the theory of random dynamical systems (RDS) that provides a general coupling prescription between the nodes of any given regulatory network given the dynamics of each node is modeled by a RDS. The main virtues of this approach are the following: (i) it provides a natural way to obtain arbitrarily large networks by coupling together simple basic pieces, thus revealing the modularity of regulatory networks; (ii) the assumptions about the stochastic processes used in the modeling are fairly general, in the sense that the only requirement is stationarity; (iii) there is a well developed mathematical theory, which is a blend of smooth dynamical systems theory, ergodic theory and stochastic analysis that allows one to extract relevant dynamical and statistical information without solving -
POISSON PROCESSES 1.1. the Rutherford-Chadwick-Ellis
POISSON PROCESSES 1. THE LAW OF SMALL NUMBERS 1.1. The Rutherford-Chadwick-Ellis Experiment. About 90 years ago Ernest Rutherford and his collaborators at the Cavendish Laboratory in Cambridge conducted a series of pathbreaking experiments on radioactive decay. In one of these, a radioactive substance was observed in N = 2608 time intervals of 7.5 seconds each, and the number of decay particles reaching a counter during each period was recorded. The table below shows the number Nk of these time periods in which exactly k decays were observed for k = 0,1,2,...,9. Also shown is N pk where k pk = (3.87) exp 3.87 =k! {− g The parameter value 3.87 was chosen because it is the mean number of decays/period for Rutherford’s data. k Nk N pk k Nk N pk 0 57 54.4 6 273 253.8 1 203 210.5 7 139 140.3 2 383 407.4 8 45 67.9 3 525 525.5 9 27 29.2 4 532 508.4 10 16 17.1 5 408 393.5 ≥ This is typical of what happens in many situations where counts of occurences of some sort are recorded: the Poisson distribution often provides an accurate – sometimes remarkably ac- curate – fit. Why? 1.2. Poisson Approximation to the Binomial Distribution. The ubiquity of the Poisson distri- bution in nature stems in large part from its connection to the Binomial and Hypergeometric distributions. The Binomial-(N ,p) distribution is the distribution of the number of successes in N independent Bernoulli trials, each with success probability p. -
Cox Process Functional Learning Gérard Biau, Benoît Cadre, Quentin Paris
Cox process functional learning Gérard Biau, Benoît Cadre, Quentin Paris To cite this version: Gérard Biau, Benoît Cadre, Quentin Paris. Cox process functional learning. Statistical Inference for Stochastic Processes, Springer Verlag, 2015, 18 (3), pp.257-277. 10.1007/s11203-015-9115-z. hal- 00820838 HAL Id: hal-00820838 https://hal.archives-ouvertes.fr/hal-00820838 Submitted on 6 May 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Cox Process Learning G´erard Biau Universit´ePierre et Marie Curie1 & Ecole Normale Sup´erieure2, France [email protected] Benoˆıt Cadre IRMAR, ENS Cachan Bretagne, CNRS, UEB, France3 [email protected] Quentin Paris IRMAR, ENS Cachan Bretagne, CNRS, UEB, France [email protected] Abstract This article addresses the problem of supervised classification of Cox process trajectories, whose random intensity is driven by some exoge- nous random covariable. The classification task is achieved through a regularized convex empirical risk minimization procedure, and a nonasymptotic oracle inequality is derived. We show that the algo- rithm provides a Bayes-risk consistent classifier. Furthermore, it is proved that the classifier converges at a rate which adapts to the un- known regularity of the intensity process. -
Processes on Complex Networks. Percolation
Chapter 5 Processes on complex networks. Percolation 77 Up till now we discussed the structure of the complex networks. The actual reason to study this structure is to understand how this structure influences the behavior of random processes on networks. I will talk about two such processes. The first one is the percolation process. The second one is the spread of epidemics. There are a lot of open problems in this area, the main of which can be innocently formulated as: How the network topology influences the dynamics of random processes on this network. We are still quite far from a definite answer to this question. 5.1 Percolation 5.1.1 Introduction to percolation Percolation is one of the simplest processes that exhibit the critical phenomena or phase transition. This means that there is a parameter in the system, whose small change yields a large change in the system behavior. To define the percolation process, consider a graph, that has a large connected component. In the classical settings, percolation was actually studied on infinite graphs, whose vertices constitute the set Zd, and edges connect each vertex with nearest neighbors, but we consider general random graphs. We have parameter ϕ, which is the probability that any edge present in the underlying graph is open or closed (an event with probability 1 − ϕ) independently of the other edges. Actually, if we talk about edges being open or closed, this means that we discuss bond percolation. It is also possible to talk about the vertices being open or closed, and this is called site percolation. -
Applied Mathematics 1
Applied Mathematics 1 MATH 0180 Intermediate Calculus 1 Applied Mathematics MATH 0520 Linear Algebra 2 1 APMA 0350 Applied Ordinary Differential Equations 2 & APMA 0360 and Applied Partial Differential Equations Chair I 3 4 Bjorn Sandstede Select one course on programming from the following: 1 APMA 0090 Introduction to Mathematical Modeling Associate Chair APMA 0160 Introduction to Computing Sciences Kavita Ramanan CSCI 0040 Introduction to Scientific Computing and The Division of Applied Mathematics at Brown University is one of Problem Solving the most prominent departments at Brown, and is also one of the CSCI 0111 Computing Foundations: Data oldest and strongest of its type in the country. The Division of Applied CSCI 0150 Introduction to Object-Oriented Mathematics is a world renowned center of research activity in a Programming and Computer Science wide spectrum of traditional and modern mathematics. It explores the connections between mathematics and its applications at both CSCI 0170 Computer Science: An Integrated the research and educational levels. The principal areas of research Introduction activities are ordinary, functional, and partial differential equations: Five additional courses, of which four should be chosen from 5 stochastic control theory; applied probability, statistics and stochastic the 1000-level courses taught by the Division of Applied systems theory; neuroscience and computational molecular biology; Mathematics. APMA 1910 cannot be used as an elective. numerical analysis and scientific computation; and the mechanics of Total Credits 10 solids, materials science and fluids. The effort in virtually all research 1 ranges from applied and algorithmic problems to the study of fundamental Substitution of alternate courses for the specific requirements is mathematical questions.