Killi-Data News KILLI-DATA INTERNATIONAL Killi-Data News Volume 1, Issue 1, Pages 1–15, 4 April 2016
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Discovery of the Critically Endangered Annual Killifish, Austrolebias
JoTT SHORT COMMUNI C ATION 2(11): 1282-1285 Discovery of the Critically Endangered annual killifishAustrolebias wolterstorffi (Ahl, 1924) (Cyprinodontiformes: Rivulidae) in Lagoa do Peixe National Park, Rio Grande do Sul, southern Brazil L.E.K. Lanés 1 & L. Maltchik 2 1,2 Laboratory of Ecology and Conservation of Aquatic Ecosystems, University of Vale do Rio dos Sinos (UNISINOS). Av. Unisinos 950, Bairro Cristo Rei, CEP 93022-000, São Leopoldo, Rio Grande do Sul, Brazil. Email: 1 [email protected], 2 [email protected] Abstract: This paper documents the discovery of the rare and live in shallow temporary wetlands formed close to rivers, Critically Endangered annual killifish Austrolebias wolterstorffi streams and lagoons during the rainy season, and die in temporary wetland of Lagoa do Peixe National Park, an im- portant conservation unit of southern Brazil protected under the off when the pools dry (Costa 2003, 2006). Their eggs Ramsar Convention and recognized Biosphere Reserve. survive the dry season and hatch after the next rainy season begins. Keywords: Annual fish, Cynolebiasinae, endemic, freshwater, The genus Austrolebias has recently been redefined Neotropics, protected areas, Ramsar sites, restricted-range fish- phylogenetically by Costa (2006), including the species es, threatened species, wetlands. previously referred to the genus Megalebias Costa. Subsequently the genus Austrolebias was divided into subgenera (Costa 2008), according to clades defined in The neotropical aplocheiloid genus Austrolebias Costa (2006). Accordingly the subgenus Megalebias Costa comprises 40 small annual killifishes endemic to which has the same general geographic range as South America, distributed in southern Brazil, southern Austrolebias, comprises five valid species: Austrolebias Bolivia, Paraguay, Uruguay and northeastern Argentina cheradophilus (Vaz-Ferreira, Sierra de Soriano & Scaglia- (Costa 2010). -
A New Genus of Miniature Cynolebiasine from the Atlantic
64 (1): 23 – 33 © Senckenberg Gesellschaft für Naturforschung, 2014. 16.5.2014 A new genus of miniature cynolebiasine from the Atlantic Forest and alternative biogeographical explanations for seasonal killifish distribution patterns in South America (Cyprinodontiformes: Rivulidae) Wilson J. E. M. Costa Laboratório de Sistemática e Evolução de Peixes Teleósteos, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944 – 970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br Accepted 21.ii.2014. Published online at www.senckenberg.de/vertebrate-zoology on 30.iv.2014. Abstract The analysis of 78 morphological characters for 16 species representing all the lineages of the tribe Cynopoecilini and three out-groups, indicates that the incertae sedis miniature species ‘Leptolebias’ leitaoi Cruz & Peixoto is the sister group of a clade comprising the genera Leptolebias, Campellolebias, and Cynopoecilus, consequently recognised as the only member of a new genus. Mucurilebias gen. nov. is diagnosed by seven autapomorphies: eye occupying great part of head side, low number of caudal-fin rays (21), distal portion of epural much broader than distal portion of parhypural, an oblique red bar through opercle in both sexes, isthmus bright red in males, a white stripe on the distal margin of the dorsal fin in males, and a red stripe on the distal margin of the anal fin in males.Mucurilebias leitaoi is an endangered seasonal species endemic to the Mucuri river basin. The biogeographical analysis of genera of the subfamily Cynolebiasinae using a dispersal-vicariance, event-based parsimony approach indicates that distribution of South American killifishes may be broadly shaped by dispersal events. -
Historical Biogeography of Cynolebiasine Annual Killifishes
Journal of Biogeography (J. Biogeogr.) (2010) 37, 1995–2004 ORIGINAL Historical biogeography of cynolebiasine ARTICLE annual killifishes inferred from dispersal–vicariance analysis Wilson J. E. M. Costa* Laborato´rio de Sistema´tica e Evoluc¸a˜ode ABSTRACT Peixes Teleo´steos, Departamento de Zoologia, Aim To analyse the biogeographical events responsible for the present Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, distribution of cynolebiasine killifishes (Teleostei: Rivulidae: Cynolebiasini), RJ, Brazil a diversified and widespread Neotropical group of annual fishes threatened with extinction. Location South America, focusing on the main river basins draining the Brazilian Shield and adjacent zones. Methods Phylogenetic analysis of 214 morphological characters of 102 cynolebiasine species using tnt, in conjunction with dispersal–vicariance analysis (diva) based on the distribution of cynolebiasine species among 16 areas of endemism. Results The basal cynolebiasine node is hypothesized to be derived from an old vicariance event occurring just after the separation of South America from Africa, when the terrains at the passive margin of the South American plate were isolated from the remaining interior areas. This would have been followed by geodispersal events caused by river-capturing episodes from the adjacent upland river basins to the coastal region. Optimal ancestral reconstructions suggest that the diversification of the tribe Cynolebiasini in north-eastern South America was first caused by vicariance events in the Parana˜–Urucuia–Sa˜o Francisco area, followed by dispersal from the Sa˜o Francisco to the Northeastern Brazil area. The latter dispersal event occurred simultaneously in two different cynolebiasine clades, possibly as a result of a temporary connection of the Sa˜o Francisco area before the uplift of the Borborema Plateau during the Miocene. -
Zootaxa, Description of a New Annual Rivulid Killifish Genus From
TERM OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website site is prohibited. Zootaxa 1734: 27–42 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Description of a new annual rivulid killifish genus from Venezuela TOMAS HRBEK1, 3 & DONALD C. TAPHORN2 1University of Puerto Rico – Rio Piedras, Biology Department, San Juan, PR, Puerto Rico. E-mail: [email protected] 2Museo de Ciencias Naturales, UNELLEZ, Guanare, Estado Portuguesa 3310, Venezuela 3Corresponding author Abstract We describe a new genus to accommodate the species originally described as Rivulus stellifer Thomerson & Turner, 1973, but currently referred to the genus Rachovia Myers, 1927. Rachovia stellifer has had a complicated taxonomic his- tory and has, at various times since its description, been placed in and out of three genera: Rivulus Poey, 1860, Pituna Costa, 1989 and Rachovia. However, phylogenetic analyses using 3537 mitochondrial and nuclear characters, and 93 morphological characters indicate it is not a member of any of these genera, but place it as a deeply divergent sister spe- cies to the genus Gnatholebias Costa, 1998. In addition to molecular characters, it is distinguished from the genera Rachovia and Gnatholebias by 13 and 33 morphological character states, respectively. Key words: Rivulidae, total evidence, phylogenetic analysis, taxonomic revision Introduction In the last three decades, several phylogenetic hypotheses have been proposed for the fish order Cyprinodon- tiformes, as well as for its taxonomic subsets. Parenti (1981) presented the first cladistic analysis of the Cyp- rinodontiformes, including an analysis of phylogenetic relationships of the South American family Rivulidae. -
Deterministic Shifts in Molecular Evolution Correlate with Convergence to Annualism in Killifishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deterministic shifts in molecular evolution correlate with convergence to annualism in killifishes Andrew W. Thompson1,2, Amanda C. Black3, Yu Huang4,5,6 Qiong Shi4,5 Andrew I. Furness7, Ingo, Braasch1,2, Federico G. Hoffmann3, and Guillermo Ortí6 1Department of Integrative Biology, Michigan State University, East Lansing, Michigan 48823, USA. 2Ecology, Evolution & Behavior Program, Michigan State University, East Lansing, MI, USA. 3Department of Biochemistry, Molecular Biology, Entomology, & Plant Pathology, Mississippi State University, Starkville, MS 39759, USA. 4Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Marine, Shenzhen 518083, China. 5BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. 6Department of Biological Sciences, The George Washington University, Washington, DC 20052, USA. 7Department of Biological and Marine Sciences, University of Hull, UK. Corresponding author: Andrew W. Thompson, [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455723; this version posted August 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract: The repeated evolution of novel life histories correlating with ecological variables offer opportunities to test scenarios of convergence and determinism in genetic, developmental, and metabolic features. Here we leverage the diversity of aplocheiloid killifishes, a clade of teleost fishes that contains over 750 species on three continents. -
The Etyfish Project © Christopher Scharpf and Kenneth J
CYPRINODONTIFORMES (part 3) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 3.0 - 13 Nov. 2020 Order CYPRINODONTIFORMES (part 3 of 4) Suborder CYPRINODONTOIDEI Family PANTANODONTIDAE Spine Killifishes Pantanodon Myers 1955 pan(tos), all; ano-, without; odon, tooth, referring to lack of teeth in P. podoxys (=stuhlmanni) Pantanodon madagascariensis (Arnoult 1963) -ensis, suffix denoting place: Madagascar, where it is endemic [extinct due to habitat loss] Pantanodon stuhlmanni (Ahl 1924) in honor of Franz Ludwig Stuhlmann (1863-1928), German Colonial Service, who, with Emin Pascha, led the German East Africa Expedition (1889-1892), during which type was collected Family CYPRINODONTIDAE Pupfishes 10 genera · 112 species/subspecies Subfamily Cubanichthyinae Island Pupfishes Cubanichthys Hubbs 1926 Cuba, where genus was thought to be endemic until generic placement of C. pengelleyi; ichthys, fish Cubanichthys cubensis (Eigenmann 1903) -ensis, suffix denoting place: Cuba, where it is endemic (including mainland and Isla de la Juventud, or Isle of Pines) Cubanichthys pengelleyi (Fowler 1939) in honor of Jamaican physician and medical officer Charles Edward Pengelley (1888-1966), who “obtained” type specimens and “sent interesting details of his experience with them as aquarium fishes” Yssolebias Huber 2012 yssos, javelin, referring to elongate and narrow dorsal and anal fins with sharp borders; lebias, Greek name for a kind of small fish, first applied to killifishes (“Les Lebias”) by Cuvier (1816) and now a -
Zootaxa, a New Species of Simpsonichthys
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2452: 51–58 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new species of Simpsonichthys (Cyprinodontiformes: Rivulidae) from the rio São Francisco basin, northeastern Brazil DALTON TAVARES BRESSANE NIELSEN1, OSCAR AKIO SHIBATTA2, ROGÉRIO DOS REIS SUZART1 & AMER FAOUR MARTÍN1 1Av. Independência, 531, ap. 21-B, 12031-000, Taubaté, SP. E-mail: [email protected] 2Museu de Zoologia, Departamento de Biologia Animal e Vegetal, Centro de Ciências Biológicas, Universidade Estadual de Londrina, 86051-990, Londrina, PR. Corresponding author. E-mail: [email protected] Abstract Simpsonichtys lopesi n. sp. is described from a temporary pool located in the São Francisco river basin. This species is distinguished from remaining species, except S. adornatus, by the large number of dorsal fin rays, which makes possible a large dorsal fin base length that begins well anterior to the middle of the body, before the vertical line through the pelvic fin. This species differs from S. adornatus by the color pattern of the anal fin, which may have yellow stripes or light dots (vs. small light points), and also by the lower number of dorsal fin rays. Key words: Annual fishes, Neotropical region, temporary pools Resumo Simpsonichthys lopesi n. sp. é descrita de uma poça temporária localizada na bacia do rio São Francisco. A espécie distingue-se das demais, exceto S. adornatus, pelo grande número de raios da nadadeira dorsal, o que confere grande comprimento da base dessa nadadeira que se inicia muito antes da metade do corpo, antes da nadadeira pélvica. -
Monophyly and Taxonomy of the Neotropical Seasonal Killifish Genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the Description of a New Genus
Zoological Journal of the Linnean Society, 2008, 153, 147–160. With 11 figures Monophyly and taxonomy of the Neotropical seasonal killifish genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the description of a new genus WILSON J. E. M. COSTA* Downloaded from https://academic.oup.com/zoolinnean/article/153/1/147/2606377 by guest on 23 November 2020 Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brazil Received 30 March 2007; accepted for publication 4 July 2007 A phylogenetic analysis based on morphological characters indicates that Leptolebias Myers, 1952, a genus of small killifishes highly threatened with extinction, from Brazil, is paraphyletic. As a consequence, Leptolebias is restricted in this study to a well-supported clade that includes Leptolebias marmoratus (Ladiges, 1934), Leptolebias splendens (Myers, 1942), Leptolebias opalescens (Myers, 1942), and Leptolebias citrinipinnis (Costa, Lacerda & Tanizaki, 1988), from the coastal plains of Rio de Janeiro, and Leptolebias aureoguttatus (Cruz, 1974) (herein redescribed, and for which a lectotype is designated) and Leptolebias itanhaensis sp. nov., from the coastal plains of São Paulo and Paraná, in southern Brazil. Leptolebias is diagnosed by three synapomorphies: a caudal fin that is longer than deep, a single anterior supraorbital neuromast, and dark pigmentation that does not extend to the distal portion of the dorsal fin in males. A key is provided for the identification of species of Leptolebias. Three species formerly placed in Leptolebias, Leptolebias minimus (Myers, 1942), Leptolebias fractifasciatus (Costa, 1988), and Leptolebias cruzi (Costa, 1988), are transferred to Notholebias gen. -
The Neotropical Genus Austrolebias: an Emerging Model of Annual Killifishes Nibia Berois1, Maria J
lopmen ve ta e l B D io & l l o l g e y C Cell & Developmental Biology Berois, et al., Cell Dev Biol 2014, 3:2 ISSN: 2168-9296 DOI: 10.4172/2168-9296.1000136 Review Article Open Access The Neotropical Genus Austrolebias: An Emerging Model of Annual Killifishes Nibia Berois1, Maria J. Arezo1 and Rafael O. de Sá2* 1Departamento de Biologia Celular y Molecular, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay 2Department of Biology, University of Richmond, Richmond, Virginia, USA *Corresponding author: Rafael O. de Sá, Department of Biology, University of Richmond, Richmond, Virginia, USA, Tel: 804-2898542; Fax: 804-289-8233; E-mail: [email protected] Rec date: Apr 17, 2014; Acc date: May 24, 2014; Pub date: May 27, 2014 Copyright: © 2014 Rafael O. de Sá, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life. Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the key to the survival of the species. -
Amazon Alive!
Amazon Alive! A decade of discovery 1999-2009 The Amazon is the planet’s largest rainforest and river basin. It supports countless thousands of species, as well as 30 million people. © Brent Stirton / Getty Images / WWF-UK © Brent Stirton / Getty Images The Amazon is the largest rainforest on Earth. It’s famed for its unrivalled biological diversity, with wildlife that includes jaguars, river dolphins, manatees, giant otters, capybaras, harpy eagles, anacondas and piranhas. The many unique habitats in this globally significant region conceal a wealth of hidden species, which scientists continue to discover at an incredible rate. Between 1999 and 2009, at least 1,200 new species of plants and vertebrates have been discovered in the Amazon biome (see page 6 for a map showing the extent of the region that this spans). The new species include 637 plants, 257 fish, 216 amphibians, 55 reptiles, 16 birds and 39 mammals. In addition, thousands of new invertebrate species have been uncovered. Owing to the sheer number of the latter, these are not covered in detail by this report. This report has tried to be comprehensive in its listing of new plants and vertebrates described from the Amazon biome in the last decade. But for the largest groups of life on Earth, such as invertebrates, such lists do not exist – so the number of new species presented here is no doubt an underestimate. Cover image: Ranitomeya benedicta, new poison frog species © Evan Twomey amazon alive! i a decade of discovery 1999-2009 1 Ahmed Djoghlaf, Executive Secretary, Foreword Convention on Biological Diversity The vital importance of the Amazon rainforest is very basic work on the natural history of the well known. -
01 Astyanax Final Version.Indd
Vertebrate Zoology 59 (1) 2009 31 31 – 40 © Museum für Tierkunde Dresden, ISSN 1864-5755, 29.05.2009 Osteology of the African annual killifi sh genus Callopanchax (Teleostei: Cyprinodontiformes: Nothobranchiidae) and phylogenetic implications WILSON J. E. M. COSTA Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brazil E-mail: wcosta(at)acd.ufrj.br Received on May 5, 2008, accepted on October 6, 2008. Published online at www.vertebrate-zoology.de on May 15, 2009. > Abstract Osteological structures of Callopanchax are fi rst described and illustrated. Twenty-six characters derived from comparisons of osseous structures among some aplocheiloid fi shes provided evidence supporting hypotheses of relationships among three western African genera (Callopanchax, Scriptaphyosemion and Archiaphyosemion), as proposed in recent molecular analysis. The clade comprising Callopanchax, Scriptaphyosemion and Archiaphyosemion is supported by a laterally displaced antero-proximal process of the fourth ceratobranchial. The sister group relationship between Callopanchax and Scriptaphyosemion is supported by a constriction on the posterior portion of the parasphenoid, an anterior expansion of the hyomandibula, a rectangular basihyal cartilage, an anterior pointed process on the fi rst vertebra, and a long ventrally directed hemal prezygapophysis on the preural centrum 2. Monophyly of Callopanchax is supported by a convexity on the dorsal margin of the opercle, a long interarcual cartilage, and long neural prezygapophyses on the anterior caudal vertebrae. > Key words Killifi shes, Callopanchax, Africa, Osteology, Annual fi shes. Introduction COSTA, 1998a, 2004) and among genera and species of the Rivulidae (e. g., COSTA, 1998b, 2005, 2006a, b).