Bond Donors for Selective Anion Recognition
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Some Unusual, Astronomically Significant Organic Molecules
'lL-o Thesis titled: Some Unusual, Astronomically Significant Organic Molecules submitted for the Degree of Doctor of Philosophy (Ph,D.) by Salvatore Peppe B.Sc. (Hons.) of the Department of Ghemistty THE UNIVERSITY OF ADELAIDE AUSTRALIA CRUC E June2002 Preface Gontents Contents Abstract IV Statement of Originality V Acknowledgments vi List of Figures..... ix 1 I. Introduction 1 A. Space: An Imperfect Vacuum 1 B. Stellff Evolution, Mass Outflow and Synthesis of Molecules 5 C. Astronomical Detection of Molecules......... l D. Gas Phase Chemistry.. 9 E. Generation and Detection of Heterocumulenes in the Laboratory 13 L.2 Gas Phase Generation and Characterisation of Ions.....................................16 I. Gas Phase Generation of Ions. I6 A. Positive Ions .. I6 B. Even Electron Negative Ions 17 C. Radical Anions 2t tr. Mass Spectrometry 24 A. The VG ZAB 2}lF Mass Spectrometer 24 B. Mass-Analysed Ion Kinetic Energy Spectrometry......... 25 III. Characterisation of Ions.......... 26 A. CollisionalActivation 26 B. Charge Reversal.... 28 C. Neutralisation - Reionisation . 29 D. Neutral Reactivity. JJ rv. Fragmentation Behaviour ....... 35 A. NegativeIons.......... 35 Preface il B. Charge Inverted Ions 3l 1.3 Theoretical Methods for the Determination of Molecular Geometries and Energetics..... ....o........................................ .....39 L Molecular Orbital Theory........ 39 A. The Schrödinger Equation.... 39 B. Hartree-Fock Theory ..44 C. Electron Correlation ..46 D. Basis sets............ .51 IL Transition State Theory of Unimolecular Reactions ......... ................... 54 2. Covalently Bound Complexes of CO and COz ....... .........................58 L Introduction 58 tr. Results and Discussion........... 59 Part A: Covalently bound COz dimers (OzC-COr)? ............ 59 A. Generation of CzO¿ Anions 6I B. NeutralCzO+........ -
Hydrates and Polymorphs of Lead Squarate Pb(C4O4): Structural Transformations Studied by in Situ X-Ray Powder Diffraction and Solid State NMR Thierry Bataille, A
Hydrates and polymorphs of lead squarate Pb(C4O4): Structural transformations studied by in situ X-ray powder diffraction and solid state NMR Thierry Bataille, A. Bouhali, Cassendre Kouvatas, C. Trifa, Nathalie Audebrand, C. Boudaren To cite this version: Thierry Bataille, A. Bouhali, Cassendre Kouvatas, C. Trifa, Nathalie Audebrand, et al.. Hy- drates and polymorphs of lead squarate Pb(C4O4): Structural transformations studied by in situ X-ray powder diffraction and solid state NMR. Polyhedron, Elsevier, 2019, 164, pp.123-131. 10.1016/j.poly.2019.02.047. hal-02090016 HAL Id: hal-02090016 https://hal-univ-rennes1.archives-ouvertes.fr/hal-02090016 Submitted on 6 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Hydrates and polymorphs of lead squarate Pb(C4O4): structural transformations studied by in situ X-ray powder diffraction and solid state NMR Thierry Bataille*,a Amira Bouhali,b Cassandre Kouvatas,a,c Chahrazed Trifa,b Nathalie Audebrand,a Chaouki Boudaren b a Univ Rennes, Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR - -
Exploring Structure-Activity Relationship in Tacrine-Squaramide Derivatives As Potent Cholinesterase Inhibitors
biomolecules Article Exploring Structure-Activity Relationship in Tacrine-Squaramide Derivatives as Potent Cholinesterase Inhibitors 1,2, 1,2,3, 1,2 1,2 Barbora Svobodova y, Eva Mezeiova y, Vendula Hepnarova , Martina Hrabinova , Lubica Muckova 1,2 , Tereza Kobrlova 1 , Daniel Jun 1,2 , Ondrej Soukup 1,2, María Luisa Jimeno 4, José Marco-Contelles 3,* and Jan Korabecny 1,2,* 1 Department of Toxicology and Military Pharmacy, Faculty of Military Health Sciences, Trebesska 1575, 500 01 Hradec Kralove, Czech Republic 2 Biomedical Research Centre, University Hospital Hradec Kralove, Sokolska 581, 500 05 Hradec Kralove, Czech Republic 3 Laboratory of Medicinal Chemistry, Institute of General Organic Chemistry, Juan de la Cierva 3, 28006-Madrid, Spain 4 Centro de Química Orgánica “Lora-Tamayo” (CSIC), C/Juan de la Cierva 3, 28006-Madrid, Spain * Correspondence: [email protected] (J.M.-C.); [email protected] (J.K.); Tel.: +34-91-2587554 (J.M.-C.); +420-495-833-447 (J.K.) These authors contributed equally to this paper. y Received: 2 August 2019; Accepted: 17 August 2019; Published: 19 August 2019 Abstract: Tacrine was the first drug to be approved for Alzheimer’s disease (AD) treatment, acting as a cholinesterase inhibitor. The neuropathological hallmarks of AD are amyloid-rich senile plaques, neurofibrillary tangles, and neuronal degeneration. The portfolio of currently approved drugs for AD includes acetylcholinesterase inhibitors (AChEIs) and N-methyl-d-aspartate (NMDA) receptor antagonist. Squaric acid is a versatile structural scaffold capable to be easily transformed into amide-bearing compounds that feature both hydrogen bond donor and acceptor groups with the possibility to create multiple interactions with complementary sites. -
Application of Squaric Acid to the Preparation of Bioactive Compounds
Application of Squaric Acid to The Preparation of Bioactive Compounds By Meijun Lu A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Master of Science in Chemistry Waterloo, Ontario, Canada, 2008 © Meijun Lu 2008 I hereby declare that I am the sole author of this thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. ii ABSTRACT Nucleosides and nucleoside analogues exhibit a broad spectrum of biological activities including antiviral, anticancer, antibacterial and antiparasitic activities, which generally result from their ability to inhibit specific enzymes. Nucleoside analogues can interact with cellular enzymes involved in the biosynthesis or degradation of RNA (ribonucleic acid) and/or DNA (deoxyribonucleic acid) or with specific viral enzymes to result in their biological activities and therapeutic effects. In addition, another possible target is their incorporation into DNA/RNA which could affect replication and transcription. They have been beneficial to the development of new pharmaceuticals. Squaric acid and its derivatives have been successfully used as a bioisosteric group in various biomedicinal areas. The aim of this research proposal was to apply squaric acid analogues to the design and synthesis of novel nucleoside analogues. Three squaric acid-based new nucleoside analogues were made starting from dimethyl squarate. The compounds were 4-amino-3-[((1R,3S)-3-hydroxymethyl-4-cyclopentene)- 1-amino]-3-cyclobutene-1,2-dione, 4-methoxy-3-[((1R,3S)-3-hydroxymethyl-4-cyclopen tene)-1-amine]-3-cyclobutene-1,2-dione, and 4-hydroxy-3-[((1R,3S)-3-hydroxymethyl-4- cyclopentene)-1-amine]-3-cyclobutene-1,2-dionate, sodium salt. -
Croconate Salts. New Bond-Delocalized Dianions, &Q
JOURNAL OF RESEARCH of the National Bureau of Standards Volume 85, No.2, March·April1980 Pseudo-Oxocarbons. Synthesis of 2, 1,3-Bis-, and 1, 2, 3-Tris (Dicyanomethylene) Croconate Salts. New Bond-Delocalized Dianions, "Croconate Violet" and "Croconate Blue"* Alexander J. Fatiadit National Bureau of Standards, Washington, D.C. 20234 October 24,1979 Synthesis and characteri zation of new bond·delocalized dianions, e.g., 2, 1,3·bis·, 1,2, 3·tris (di cyanomethyl. ene) croconate salts have been described. The dianions re ported represent a new class of aromati c, nonbenze· noid co mpounds, named pseudo·oxocarbons. A study of their physical, analytical and chemical properties offer a new direction in the chemistry of oxocarbons. Key words: Acid; aromatic; bond·delocalized; croco nic; diani on; malononitrile; nonbenzenoid; oxocarbon; salt; synthesis 1. Introduction molecular properties of the croconic salts (e.g. 2 , dipotas sium salt) were first seriously investigated when a symmetri The bright ye ll ow dipotassium croconate 1 and croconic cal, delocalized structure fo r the dianion 2 was proposed by acid (1 , K = H, 4,5-dihydroxy-4--cyclopentene-l,2,3-trione) Yamada et aJ. [3] in 1958. A few years later [4], the d i anion 2 were first isolated by Gmelin [1]' in 1825, from the black, ex· and the related deltate [5], squarate, rhodizonate, and plosive, side-reaction product (e.g. K6 C6 0 6 + KOC=COK), tetrahydroxyquinone anions were recognized by West et aJ. by the reaction of carbon with potassium hydroxide, in a [2,4] as members of a new class of aromatic oxocarbons pioneer, industrial attempt to manufacture potassium. -
Ion Batteries
i DEVELOPMENT OF NOVEL ASSEMBLY APPROACHES FOR SUPERIOR ELECTRODE MATERIALS OF LITHIUM‐ ION BATTERIES By Ruiming Huang A Dissertation submitted to the Graduate School-Newark Rutgers, the State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Chemistry Written under the direction of Professor Huixin He And approved by ________________________ ________________________ ________________________ ________________________ Newark, New Jersey October, 2015 ii COPYRIGHT ©2015 Ruiming Huang ALL RIGHTS RESERVED ii ABSTRACT OF THE THESIS Development of Novel Assembly Approaches for Superior Electrode Materials of Lithium-Ion Batteries By Ruiming Huang Dissertation Director: Dr. Huixin He Rechargeable lithium ion batteries have attracted tremendous attention as “green” technology for electric vehicles and smart grids. In addition, the demand for flexible and high energy batteries has increased exponentially due to the growing need for smartphones and bio-devices over last few years. The conventional inorganic cathode materials (e.g., LiCoO2 and LiFePO4) for Lithium ion batteries are not flexible; they are also restricted by their low theoretical specific capacity. To satisfy the emerging large- scale applications of energy storage, new generation batteries should have high power and energy densities, and a long cycle life. In near term, new inorganic cathode and anode materials are developing to increase their capacity. In long term, the next generation batteries were proposed to be made from inexpensive renewable and/or recyclable resources via low energy consumption processes for energy sustainability with minimal environmental footprint. However, issues such as low electronic conductivity, large volume change during the charge/discharge cycles and dissolution of the active materials, commonly existed in these new electrode materials. -
Croconic Acid and Alkali Metal Croconate Salts: Some New Insights Into an Old Story
FULL PAPER Croconic Acid and Alkali Metal Croconate Salts: Some New Insights into an Old Story Dario Braga,*[a] Lucia Maini,[a] and Fabrizia Grepioni*[b] Abstract: The solid-state structures of a are described and compared with the interplanar separations lie in the narrow series of alkali metal salts of the cro- Li ,K and NH4 salts. Single crystals of range 3.12 ± 3.42 ä and do not necessa- 2À p conate dianion (C5O5 ) and of croconic croconic acid were obtained by crystal- rily reflect the presence of -stacking acid (H2C5O5) have been determined. lisation of croconic acid in the presence interactions. It is argued that the small The alkali metal croconates were ob- of HCl. Crystal structure determinations interplanar separation is the result of a 2À tained by ring contraction of rhodizonic showed that the C5O5 ions tend to compromise between packing of flat acid (H2C6O6), upon treatment with organize themselves in columns. The croconate units and the spherical cations alkali metal hydroxides and recrystalli- together with the water molecules that sation from water. The novel species fill the coordination spheres of the alkali Keywords: alkali metals ¥ Na C O ¥2H O, Rb C O and Cs C O , metal atoms. 2 5 5 2 2 5 5 2 5 5 croconates ¥ crystal engineering ¥ as well as the mixed hydrogencroconate/ oxocarbons ¥ stacking interactions croconate salt K3(HC5O5)(C5O5)¥2H2O Introduction supramolecular aggregation of the building blocks rather than from their nature. Crystal engineering, the bottom-up construction of crystalline Indeed most of the successful crystal-engineering experi- solids with desired arrangements of the component molecules ments have been conducted on simple systems, like guanidi- and ions,[1] has fuelled new interest in some old issues of nium and sulfonate ions,[5] organometallic acids,[6] halometal- structural chemistry. -
Anomalous Mechanical Behavior of the Deltic, Squaric and Croconic Cyclic Oxocarbon Acids
IOP Publishing Journal Title Journal XX (XXXX) XXXXXX https://doi.org/XXXX/XXXX Anomalous mechanical behavior of the deltic, squaric and croconic cyclic oxocarbon acids Francisco Colmenero1 1 Molecular Physics Department, Instituto de Estructura de la Materia (CSIC), Madrid, Spain E-mail: [email protected] Received xxxxxx Accepted for publication xxxxxx Published xxxxxx Abstract The structural and mechanical properties of the deltic, squaric and croconic cyclic oxocarbon acids were obtained using theoretical solid-state methods based in Density Functional Theory employing very demanding calculation parameters in order to yield realistic theoretical descriptions of these materials. The computed lattice parameters, bond distances, angles, and X-ray powder diffraction patterns of these materials were in excellent agreement with their experimental counterparts. The crystal structures of these materials were found to be mechanically stable since the calculated stiffness tensors satisfy the Born mechanical stability conditions. Furthermore, the values of the bulk modulus and their pressure derivatives, shear and Young moduli, Poisson ratio, ductility and hardness indices, as well as mechanical anisotropy measures of these materials were reported. A complete review of the literature concerning the negative Poisson ratio and negative linear compressibility phenomena is given together with the theoretical study of the mechanical behavior of cyclic oxocarbon acid materials. The deltic, squaric, and croconic acids in the solid state are highly anisotropic materials characterized by low hardness and relatively low bulk moduli. The three materials display small negative Poisson ratios. The croconic acid displays the phenomenon of negative linear compressibility for applied pressures larger than ~0.4 GPa directed along the direction of minimum Poisson ratio and undergoes a pressure induced phase transition at applied pressures larger than ~1.0 GPa. -
A Prebiotic Photochemical Synthesis of Glycerides
Proceedings of the 2nd WSEAS International Conference on BIOMEDICAL ELECTRONICS and BIOMEDICAL INFORMATICS A Prebiotic Photochemical Synthesis of Glycerides N. Aylward , Queensland University of Technology, Brisbane,Australia [email protected] Abstract: - The magnesium ion metalloporphyrin complex is shown to bind the ligands alkyne and carbon monoxide with migration and bridging between the metal ion and nitrogen bound ligands. The sequence of reactions to form the glyceride acyl bond is: 1. Up to four carbon monoxide molecules may be individually bound to the metal and migrate to the four vacant nitrogen sites to form bridged aziridine-2one rings. 2. The metal bound alkyne (e.g. propyne) reacts with a peripherally bound carbon monoxide to form a propanone ring compound. 3. The propanone ring ligand isomerises by a hydrogen shift to a 3-methyl butenone ligand with an activation energy of 0.112 h. 4. The 3-methyl butenone ligand forms an acyl bridge to a peripheral carbon monoxide with an activation energy of 0.007 h. 5. The excited state complex is greatly stabilised by protonation, whilst mild hydrogenation at the metal and positively charged carbon atom frees the alkene ester. 6. The activation energy to bond the three carbon monoxide entities bound to the peripheral nitrogen sites is 0.126 h. 7. Mild reduction at the peripheral nitrogen sites frees the mono-glyceride. The reactions have been shown to be feasible from the overall enthalpy changes in the ZKE approximation at the HF and MP2 /6-31G* level. Key-Words: - Prebiotic photochemical synthesis, mono-glycerides, carbon monoxide, propyne. -
Polymer=Bound Ketenes and Allenes: Preparation and Applications
Polymer=BoundKetenes and Allenes: Preparation and Applications Adel Rafai Far A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Chemistry University of Toronto O Copyright by Adel Rafai Far (2000) National Library Bibliothèque nationale ofCanada du Canada Acquisitions and Acquisitions et Bibliographie Services services bibliographiques 395 Wellington Street 395. rue Wellington Ottawa ON KIA ON4 Oaawa ON K1A ON4 Canada CaMda The author has granted a non- L'auteur a accordé une Licence non exclusive licence ailowing the exclusive permettant à la National Libmy of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or seii reproduire, prêter, distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/film, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts £iom it Ni la thèse ni des extraits substantiels may be printed or othenvise de celle-ci ne doivent être impkés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Abstract The main scope of the research presented in this thesis is the investigation of the viabilit y of polymer- bound ketenes and allenes, and of their reactions. These studies represent a continuation both of the current developments in polyrner-bound synthesis. and of the recent progresses in cumulene chemisuy. Attempts were made to use 1,3-dioxin4ones as preçursors of polyrner-bound acylketenes. -
Binder Comprising a Cyclic Oxocarbon
(19) TZZ¥__T (11) EP 3 184 497 A1 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 28.06.2017 Bulletin 2017/26 C03C 25/24 (2006.01) C03C 25/32 (2006.01) D04H 1/64 (2012.01) D04H 1/4209 (2012.01) (2006.01) (21) Application number: 15202578.9 C08G 16/00 (22) Date of filing: 23.12.2015 (84) Designated Contracting States: (72) Inventor: HJELMGAARD, Thomas AL AT BE BG CH CY CZ DE DK EE ES FI FR GB 3480 Fredensborg (DK) GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR (74) Representative: Letzelter, Felix Phillip Designated Extension States: Meissner Bolte Patentanwälte BA ME Rechtsanwälte Partnerschaft mbB Designated Validation States: Widenmayerstraße 47 MA MD 80538 München (DE) (71) Applicant: Rockwool International A/S 2640 Hedehusene (DK) (54) BINDER COMPRISING A CYCLIC OXOCARBON (57) Described is an aqueous binder composition for selected from the group of ammonia, amines or any salts mineral fibers comprising thereof; a component (i) in the form of a cyclic oxocarbon; a component (iii) in the form of one or more carbohy- a component (ii) in the form of one or more compounds drates. EP 3 184 497 A1 Printed by Jouve, 75001 PARIS (FR) EP 3 184 497 A1 Description Field of the Invention 5 [0001] The present invention relates to an aqueous binder for mineral fibre products, a method of producing a bonded mineral fibre product using said binder, and a mineral fibre product comprising mineral fibres in contact with a cured binder. -
Synthesis of Superelectrophiles from Small Oxocarbon Compounds
Dissertation zur Erlangung des Doktorgrades der Fakultät für Chemie und Pharmazie der Ludwig-Maximilians-Universität München Synthesis of Superelectrophiles from Small Oxocarbon Compounds Manuel Tobias Schickinger aus Gräfelfing 2018 Erklärung Diese Dissertation wurde im Sinne von § 7 der Promotionsordnung vom 28. November 2011 von Herrn Prof. Dr. Andreas J. Kornath betreut. Eidesstattliche Versicherung Diese Dissertation wurde selbständig, ohne unerlaubte Hilfe erarbeitet. München, den 3. Januar 2019 ............................................................................. Manuel Schickinger Dissertation eingereicht am 15. November 2018 1. Gutachter: Prof. Dr. Andreas Kornath 2. Gutachter: Prof. Dr. Thomas Klapötke Mündliche Prüfung am 13. Dezember 2018 „Mir koe die Wege, auf dee die Meshe zur Erketis gelage, fast ebenso euderugsürdig or ie die Natur der Dige selst.“ Johannes Kepler Danksagung Zuerst möchte ich mich besonders bei Herrn Prof. Dr. Andreas J. Kornath für die freundliche Aufnahme in seinem Arbeitskreis, für das sehr interessante und herausfordernde Thema dieser Dissertation, sein Vertrauen und seine Unterstützung sowie die Freiheit, in wissenschaftlicher Hinsicht meine Ideen zu verwirklichen, bedanken. Auch für die Möglichkeit, an zahlreichen Konferenzen teilnehmen zu dürfen, möchte ich mich ganz herzlich bedanken. Des Weiteren möchte ich Herrn Prof. Dr. Thomas M. Klapötke für die Übernahme der Zweitkorrektur danken. Als nächstes gilt mein Dank Joe und Can, die mich so freundlich in diesem Arbeitskreis aufgenommen haben und mir als Mentoren die nicht ganz alltäglichen Arbeitstechniken beigebracht haben. Darüber hinaus sind sie auch noch auf privater Ebene zu guten Freunden geworden. Domi, Ines, Flo, Yvonne, Michi, Chris, Steffi, Alan, Lukas, Julia, Nedz und Marie möchte ich für die einzigartige Arbeitsatmosphäre danken. Es war jeden Tag eine Freude, mit euch zusammenzuarbeiten und in zahlreichen konstruktiven Gesprächen chemische Probleme zu diskutieren.