Nanomesh Interacting with Water and Atomic Hydrogen

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Nanomesh Interacting with Water and Atomic Hydrogen http://www.ncbi.nlm.nih.gov/pubmed/21678774. Postprint available at: http://www.zora.uzh.ch Zurich Open Repository and Archive University of Zurich Posted at the Zurich Open Repository and Archive, University of Zurich. Main Library http://www.zora.uzh.ch Winterthurerstr. 190 CH-8057 Zurich www.zora.uzh.ch Originally published at: Ding, Y; Iannuzzi, M; Hutter, J (2011). Investigation of h-BN/Rh(111) nanomesh interacting with water and atomic hydrogen. CHIMIA International Journal for Chemistry, 65(4):256-259. Year: 2011 Investigation of h-BN/Rh(111) nanomesh interacting with water and atomic hydrogen Ding, Y; Iannuzzi, M; Hutter, J http://www.ncbi.nlm.nih.gov/pubmed/21678774. Postprint available at: http://www.zora.uzh.ch Posted at the Zurich Open Repository and Archive, University of Zurich. http://www.zora.uzh.ch Originally published at: Ding, Y; Iannuzzi, M; Hutter, J (2011). Investigation of h-BN/Rh(111) nanomesh interacting with water and atomic hydrogen. CHIMIA International Journal for Chemistry, 65(4):256-259. Investigation of h-BN/Rh(111) nanomesh interacting with water and atomic hydrogen Abstract Recent STM experiments show that by exposing h-BN/Rh(111) nanomesh to water or atomic hydrogen interesting phenomena can be observed. We investigated by Density Functional Theory (DFT) the structure of bare nanomesh as well as in the presence of water clusters and atomic hydrogen. Our simulations allow the correct interpretation of the observed modifications of the STM topography under different tested conditions. For example, we could determine that the frequently observed three protrusions within the pore appearing in STM images obtained after dosing small amounts of water, are most likely determined by water hexamers. We also could confirm that the flattening of the h-BN overlayer after dosing atomic hydrogen is determined by the intercalation of the latter between BN and metal, which prevents the effective binding between N and Rh. 256 CHIMIA 2011, 65, No. 4 Laureates: awards and Honors, sCs FaLL Meeting 2010 doi:10.2533/chimia.2011.256 Chimia 65 (2011) 256–259 © Schweizerische Chemische Gesellschaft Investigation of h-BN/Rh(111) Nanomesh Interacting with Water and Atomic Hydrogen Yun Ding§, Marcella Iannuzzi*, and Jürg Hutter §SCS DSM Prize for best poster Abstract: Recent STM experiments show that by exposing h-BN/Rh(111) nanomesh to water or atomic hydrogen interesting phenomena can be observed. We investigated by Density Functional Theory (DFT) the structure of bare nanomesh as well as in the presence of water clusters and atomic hydrogen. Our simulations allow the cor- rect interpretation of the observed modifications of the STM topography under different tested conditions. For example, we could determine that the frequently observed three protrusions within the pore appearing in STM im- ages obtained after dosing small amounts of water, are most likely determined by water hexamers. We also could confirm that the flattening of the h-BN overlayer after dosing atomic hydrogen is determined by the intercalation of the latter between BN and metal, which prevents the effective binding between N and Rh. Keywords: Atomic hydrogen · Boron nitride nanomesh · Intercalation · STM · Water hexamer Introduction deposited into the pore of the nanomesh. package.[8] We used the revised PBE for In recent STM experiments, after dosing the exchange and correlation functional[9] The hexagonal boron nitride nanomesh is 0.001 L water to bare nanomesh at 34 K, plus van der Waals dispersion corrections a corrugated structure with a periodicity of protrusions could be observed in some computed through the Grimme pair-po- 3.22 nm.[1,2] It is formed by decomposition of the pores. Three protrusions forming tential.[10] Goedecker-Teter-Hutter(GTH) of borazine onto a clean Rh(111) surface at an inequilateral triangle, with an average pseudopotentials[11] describe the interac- high temperature. The single layer h-BN is side-length around 4.6 Å, are the most fre- tion with the cores, where 17 valence elec- regularly corrugated, with 2 nm diameter quently observed geometries. It was im- trons are considered for Rh atom, 5 for N, ‘pores’ induced by the binding interaction mediately noticed that 4.6 Å is close to the and 3 for B. Double zeta short range mo- occurring when N atoms are located atop distance of second neighbor molecules in lopt basis sets[12] are used for Rh, B and surface Rh atoms. Other regions, which ice clusters. Another interesting phenom- N atoms, and triple zeta for O and H. An are less tightly bound to the substrate, enon has been observed by dosing atomic energy cutoff of 500 Ry is used to describe form the so-called ‘wire’. The unit cell hydrogen. In this case, the corrugation dis- the plane wave expansion of the density. is given by 13×13 BN pairs over a 12×12 appears, but can be easily recovered after Our standard model for the full unit cell of Rh(111) slab.[2,3] This structure turns out mild annealing, i.e. desorbing H.[5] the nanomesh is constituted of one single to be very stable not only in gas phase,[2] We studied the interaction of different layer of 13×13 BN pairs and a four layer but also in some liquid solutions.[4] More- water clusters in the pore, on the wire, and 12×12 Rh slab, 13on12 model (914 atoms over, the pores are ordered and distantly on the rim of the nanomesh by DFT[6] struc- and 19370 basis functions). The character- distributed on the nanomesh, thus making ture optimization. By simulating the STM ization of the optimized interface systems this interface system an interesting candi- topography of the optimized structures, we by the simulation of STM images within date for self-assembly of molecule arrays. could identify the most likely aggregates the Tersoff-Hamann approximation[13] al- [1] that are observed by STM experiments. We lows direct comparison of our results with In experiments, C60 and naphthalocy- canine[2] have already been successfully also investigated the interaction of atomic experiment.[14] H and the nanomesh, either adsorbing it from above or intercalating it between BN and Rh. By simulated STM topography Adsorption of Water Clusters and by mapping the local work function, we could correlate the experimentally ob- The optimization of the 13on12 model served flattening of the corrugation with of the nanomesh reproduce the corrugation different amounts of intercalated atomic of about 1.0 Å. 30% of the overlayer forms hydrogen. the pore region, and lies between 2.1 and 2.3 Å above the Rh(111) surface. Here the *Correspondence: Dr. M. Iannuzzi BN registry is approximately (top, fcc), University of Zurich Institute of Physical Chemistry Method and effective binding is possible through Winterthurerstrasse 190 the hybridization of the p lone pair of N CH-8057 Zurich DFT calculations are performed with with the Rh d band. 60% of the BN pairs, Tel: +41 44 635 4479 Fax: +41 44 635 6838 the hybrid Gaussian and plane wave instead, belong to the wire, and are more E-mail: [email protected] (GPW)[7] scheme implemented in CP2K than 3 Å above Rh. In this area the registry Laureates: awards and Honors, sCs FaLL Meeting 2010 CHIMIA 2011, 65, No. 4 257 is mostly (fcc,hcp) or (hcp,fcc) and no sig- two are pointing upward. Therefore, only and –0.095 eV/H2O, respectively). At the nificant changes in the electronic structure one protrusion is seen in the calculated rim, the ring of water molecules is quite of free BN are observed. The interaction STM image. That rules out the possibility distorted due to the nanomesh corruga- is dominated by dispersion contributions. that the three protrusions in the experimen- tion. This distortion is also evident in the The work function computed on the iso- tal STM image are associated to water tri- STM analysis of this structure, where the current surface at about 3 Å over BN is mers. These results indicate that there are triangle formed by the three protrusions is also modulated, being 0.5 eV lower over features of the STM images related to the not equilateral, but shows a certain degree the pore than over the wire. The modula- orientation of the molecules and the geom- of chirality, which has been observed also tion of the work function is an important etry of the adsorbed aggregate can be ratio- in experiment. feature of the nanomesh, because the gra- nalized. In the cyclic water hexamer, each dient at the rim of the pore is considered to molecule donates one h-bond to the next be responsible for the observed trapping of molecule in the ring and has one free OH. Intercalated Atomic H molecules.[14] The distance separating second neighbor O To understand the origin of the three atoms is about 4.7 Å and when adsorbed Hydrogen intercalation below h-BN protrusions appearing on the experimental on BN, every second free OH points to the on Rh(111) has been investigated in sev- STM topography images after dosing wa- substrate, forming a weak h-bond with N eral steps starting with a single H atom ter, we optimized and characterized differ- atoms, about 2.5 Å long. Hence, this ge- on free standing h-BN, where no binding ent water clusters in the pore, on the rim, ometry is the optimal candidate to repro- was found for distances longer than 2 Å. and on the wire. Detailed characterization duce the three protrusions in the STM im- Hence, atomic H has to overcome an ener- of all the simulated systems is reported in age. Indeed, the STM simulation obtained gy barrier to approach the BN layer that is ref.
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