Curriculum Vitae Personal Scholastic Record
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Featuring Independent Software Vendors
Software Series 32000 Catalog Featuring Independent Software Vendors Software Series 32000 Catalog Featuring Independent Software Vendors .. - .. a National Semiconductor Corporation GENIX, Series 32000, ISE, SYS32, 32016 and 32032 are trademarks of National Semiconductor Corp. IBM is a trademark of International Business Machines Corp. VAX 11/730, 750, 780, PDP-II Series, LSl-11 Series, RSX-11 M, RSX-11 M PLUS, DEC PRO, MICRO VAX, VMS, and RSTS are trademarks of Digital Equipment Corp. 8080, 8086, 8088, and 80186 are trademarks of Intel Corp. Z80, Z80A, Z8000, and Z80000 are trademarks of Zilog Corp. UNIX is a trademark of AT&T Bell Laboratories. MS-DOS, XENIX, and XENIX-32 are trademarks of Microsoft Corp. NOVA, ECLIPSE, and AoS are trademarks of Data General Corp. CP/M 2.2, CP/M-80, CP/M-86 are registered trademarks of Digital Research, Inc. Concurrent DOS is a trademark of Digital Research, Inc. PRIMOS is a trademark of Prime Computer Corp. UNITY is a trademark of Human Computing Resources Corp. Introduction Welcome to the exciting world of As a result, the Independent software products for National's Software Vendor (ISV) can provide advanced 32-bit Microprocessor solutions to customer software family, Series 32000. We have problems by offering the same recently renamed our 32-bit software package independent of microprocessor products from the the particular Series 32000 CPU. NS16000 family to Series 32000. This software catalog was This program was effective created to organize, maintain, and immediately following the signing disseminate Series 32000 software of Texas Instruments, Inc. as our information. It includes the software second source for the Series vendor, contact information, and 32000. -
120421-24Recombschedule FINAL.Xlsx
Friday 20 April 18:00 20:00 REGISTRATION OPENS in Fira Palace 20:00 21:30 WELCOME RECEPTION in CaixaForum (access map) Saturday 21 April 8:00 8:50 REGISTRATION 8:50 9:00 Opening Remarks (Roderic GUIGÓ and Benny CHOR) Session 1. Chair: Roderic GUIGÓ (CRG, Barcelona ES) 9:00 10:00 Richard DURBIN The Wellcome Trust Sanger Institute, Hinxton UK "Computational analysis of population genome sequencing data" 10:00 10:20 44 Yaw-Ling Lin, Charles Ward and Steven Skiena Synthetic Sequence Design for Signal Location Search 10:20 10:40 62 Kai Song, Jie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng and Fengzhu Sun Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads 10:40 11:00 178 Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene Robinson and Jian Ma TrueSight: Self-training Algorithm for Splice Junction Detection using RNA-seq 11:00 11:30 coffee break Session 2. Chair: Bonnie BERGER (MIT, Cambrige US) 11:30 11:50 139 Son Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel Pevzner and Max Alekseyev PATH-SETS: A Novel Approach for Comprehensive Utilization of Mate-Pairs in Genome Assembly 11:50 12:10 171 Yan Huang, Yin Hu and Jinze Liu A Robust Method for Transcript Quantification with RNA-seq Data 12:10 12:30 120 Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin and Eleazar Eskin CNVeM: Copy Number Variation detection Using Uncertainty of Read Mapping 12:30 12:50 205 Dmitri Pervouchine Evidence for widespread association of mammalian splicing and conserved long range RNA structures 12:50 13:10 169 Melissa Gymrek, David Golan, Saharon Rosset and Yaniv Erlich lobSTR: A Novel Pipeline for Short Tandem Repeats Profiling in Personal Genomes 13:10 13:30 217 Rory Stark Differential oestrogen receptor binding is associated with clinical outcome in breast cancer 13:30 15:00 lunch break Session 3. -
Python for Bioinformatics, Second Edition
PYTHON FOR BIOINFORMATICS SECOND EDITION CHAPMAN & HALL/CRC Mathematical and Computational Biology Series Aims and scope: This series aims to capture new developments and summarize what is known over the entire spectrum of mathematical and computational biology and medicine. It seeks to encourage the integration of mathematical, statistical, and computational methods into biology by publishing a broad range of textbooks, reference works, and handbooks. The titles included in the series are meant to appeal to students, researchers, and professionals in the mathematical, statistical and computational sciences, fundamental biology and bioengineering, as well as interdisciplinary researchers involved in the field. The inclusion of concrete examples and applications, and programming techniques and examples, is highly encouraged. Series Editors N. F. Britton Department of Mathematical Sciences University of Bath Xihong Lin Department of Biostatistics Harvard University Nicola Mulder University of Cape Town South Africa Maria Victoria Schneider European Bioinformatics Institute Mona Singh Department of Computer Science Princeton University Anna Tramontano Department of Physics University of Rome La Sapienza Proposals for the series should be submitted to one of the series editors above or directly to: CRC Press, Taylor & Francis Group 3 Park Square, Milton Park Abingdon, Oxfordshire OX14 4RN UK Published Titles An Introduction to Systems Biology: Statistical Methods for QTL Mapping Design Principles of Biological Circuits Zehua Chen Uri Alon -
F. Alex Feltus, Ph.D
F. Alex Feltus, Ph.D. Curriculum Vitae 001010101000001000100001011001010101001000101001010010000100001010101001001000010010001000100001010001001010100100010001000101001000011110101000110010100010101010101010110101010100001000010010101010100100100000101001010010001010110100010 Clemson University • Department of Genetics & Biochemistry Biosystems Research Complex Rm 302C • 105 Collings St. • Clemson, SC 29634 (864)656-3231 (office) • (864) 654-5403 (home) • Skype: alex.feltus • [email protected] https://www.clemson.edu/science/departments/genetics-biochemistry/people/profiles/ffeltus https://orcid.org/0000-0002-2123-6114 https://www.linkedin.com/in/alex-feltus-86a0073a 001010101000001010101010101010101010100110000101100101010100100010100101001000010000101010100100100001001000100010000101000100101010010001000100010100100001111010100011001010001000001000010010101010100100100000101001010010001010110100010 Educational Background: Ph.D. Cell Biology (2000) Vanderbilt University (Nashville, TN) B.Sc. Biochemistry (1992) Auburn University (Auburn, AL) Ph.D. Dissertation Title: Transcriptional Regulation of Human Type II 3β-Hydroxysteroid Dehydrogenase: Stat5- Centered Control by Steroids, Prolactin, EGF, and IL-4 Hormones. Professional Experience: 2018- Professor, Clemson University Department of Genetics and Biochemistry 2017- Core Faculty, Biomedical Data Science and Informatics (BDSI) PhD Program 2018- Faculty Member, Clemson Center for Human Genetics 2020- Faculty Scholar, Clemson University School of Health Research (CUSHR) 2019- co-Founder, -
Automatically Achieving Elasticity in the Implementation of Programming Languages Michael Lee Horowitz
Automatically Achieving Elasticity in the Implementation of Programming Languages Michael Lee Horowitz January 1988 CMU-CS-88- I04 Submitted to CarnegieMellon Universityin partial fulf'dlment of the requirements for the degree of Doctor of Philosophy in Computer Science. Department of Computer Science Carnegie Mellon University Pittsburgh, PA 15213 Copyright © 1988 Michael Lee Horowitz. All fights reserved. This research was sponsored by the Defense Advanced Research Projects Agency (DOD), ARPA Order No. 4976 under contract F33615-87-C-1499 and monitored by the: Avionics Laboratory Air Force Wright Aeronautical Laboratories Aeronautical Systems Division (AFSC) Wright-Patterson AFB, OHIO 45433-6543 The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied, of the Defense Advanced Research Projects Agency or the US Government. Abstract Several developments in programming language design and software engineering lead to a re- examination of the role of binding times in programming language implementation. We can alleviate problems associated with these developments by using event-driven processing to determine translation binding times. Our ultimate goal is to clarify the effects of different designs on binding times and to reduce binding time concerns in the language design process. Determining the binding time of a translation action involves two concerns: the ordering of the action's execution relative to other actions and the translation phase in which the execution occurs (e.g. compile- time, link-time, or run-time). Some issues that affect these concerns include: how to handle forward references, language designs that require dynamic interpretation, the role of link-time in languages that allow separate compilation, and how to achieve elasticity. -
Sandipan Dandapat
SUNANDAN CHAKRABORTY Assistant Professor Human-Centered Computing, School of Informatics and Computing Indiana University – Purdue University Indianapolis 535 W. Michigan Street Room 567, Indianapolis, IN 46202 Email: [email protected] Phone: 1 317 278 3512 RESEARCH INTERESTS Text and Data Mining, Machine Learning, Big Data Analytics, Computational Sustainability, Computation for Development (ICTD) EDUCATION • PhD (2015): Department of Computer Science, New York University, USA • MS (2008): Dept. of Computer Science and Engineering, Indian Institute of Technology (IIT) Kharagpur, INDIA • B.Tech (2004): Computer Science & Engineering, University of Kalyani, INDIA AWARDS AND PRIZES • Winner of Grand Prize of the Wildlife Crime Tech Challenge organized by USAID in 2015 [4 grand prize winners among 300 submissions] • Winner of Janet Fabri Prize from Courant Institute of Mathematical Science (2016) [Among ~20 other thesis submission] • Winner of Harold Grad Memorial (2013) from Courant Institute of Mathematical Sciences for outstanding performance and promise as a graduate student [Selected among ~16 other PhD students] • Awarded the ACM/SIGIR Travel Grant to attend International Conference on Information Retrieval (SIGIR) 2014, Gold Coast, Australia PROFESSIONAL EXPERIENCE • Assistant Professor, School of Informatics and Computing, Indiana University Purdue University Indianapolis (Aug 2017 - present) • Post-doctoral Researcher, Center for Data Science, New York University (Sep 2015 – present) • Tracking illegal wildlife trade on the Web: Building -
ACM-BCB 2016 the 7Th ACM Conference on Bioinformatics
ACM-BCB 2016 The 7th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics October 2-5, 2016 Organizing Committee General Chairs: Steering Committee: Ümit V. Çatalyürek, Georgia Institute of Technology Aidong Zhang, State University of NeW York at Buffalo, Genevieve Melton-Meaux, University of Minnesota Co-Chair May D. Wang, Georgia Institute of Technology and Program Chairs: Emory University, Co-Chair John Kececioglu, University of Arizona Srinivas Aluru, Georgia Institute of Technology Adam Wilcox, University of Washington Tamer Kahveci, University of Florida Christopher C. Yang, Drexel University Workshop Chair: Ananth Kalyanaraman, Washington State University Tutorial Chair: Mehmet Koyuturk, Case Western Reserve University Demo and Exhibit Chair: Robert (Bob) Cottingham, Oak Ridge National Laboratory Poster Chairs: Lin Yang, University of Florida Dongxiao Zhu, Wayne State University Registration Chair: Preetam Ghosh, Virginia CommonWealth University Publicity Chairs Daniel Capurro, Pontificia Univ. Católica de Chile A. Ercument Cicek, Bilkent University Pierangelo Veltri, U. Magna Graecia of Catanzaro Student Travel Award Chairs May D. Wang, Georgia Institute of Technology and Emory University JaroslaW Zola, University at Buffalo, The State University of NeW York Student Activity Chair Marzieh Ayati, Case Western Reserve University Dan DeBlasio, Carnegie Mellon University Proceedings Chairs: Xinghua Mindy Shi, U of North Carolina at Charlotte Yang Shen, Texas A&M University Web Admins: Anas Abu-Doleh, The -
IDL (Interface Description Language). Background and Status
!-MOO 922 IDL (INTERFRCE DESCRIPTION LANGUAGE) BACKGROUND AM IVA STATUS(U) CARNEGIE-NELLON UNIV PITTSBURGH PA SOFTINE ENGINEERING INST.. D L STONE ET AL. DEC 87 UNCLRSSIFIEDleaeeaaaaaaEI CNAAI-97-TR-47 ESD-TR-07-219 F/G 12/5 NL 11111w11l I~~hI~r MSe 11111 2115 W_ *EI5E 1*4 TechnicalCMU/SEI-87-TR.-47 Report i' ESO-TR-87-210 %. Carneg ie-Melon Universt, .ri Software Engineering Institute 4\4 'F 1P IDL: Background and Status I, Donald L. Stone John R. Nestor N December 1987 t"IC N, FESLECTE 0 a s-W COII D tMUIN STAMWE ,fOr Publi ___ %- .- * 58 01 113 Ire. - -'. Technical Report CMU/SEI-87-TR-47 ESD-TR-87-210 December 1987 IDL: Background and Status Donald L. Stone John Nestor Accesion For NTIS CRA&I ' DTIC TAB " Unanno,;: ced 0 Justif,catcn . By ....... .......... Di~t ," Approed for public release. Distribution unlimited. Software Engineering institute Carnegie Mellon University Pittsburgh, Pennsylvania 15213 This technical report was prepared for the SEt Joint Program Office ESD/XRS Hanscom AFB. MA 01731 The ideas and findings in this report should not be construed as an off icial DoD position. It is published inthe Interest of scientific and technical information exchange. Review and Approval This report has been reviewed and is approved for publication. FOR THE COMMANDER Karl Shinglerr SEl Joint Program Office ,J This work was sponsored by the U.S. Department of Defense. This document is avafthls through 1he Defense Tchnical Information Cente. DTIC provides access io and transfer of scientific and lischnical information for DoD personinel. -
Optical Maps in Guided Genome Assembly
Optical maps in guided genome assembly Miika Leinonen Helsinki September 9, 2019 UNIVERSITY OF HELSINKI Master’s Programme in Computer Science HELSINGIN YLIOPISTO — HELSINGFORS UNIVERSITET — UNIVERSITY OF HELSINKI Tiedekunta — Fakultet — Faculty Koulutusohjelma — Studieprogram — Study Programme Faculty of Science Study Programme in Computer Science Tekijä — Författare — Author Miika Leinonen Työn nimi — Arbetets titel — Title Optical maps in guided genome assembly Ohjaajat — Handledare — Supervisors Leena Salmela and Veli Mäkinen Työn laji — Arbetets art — Level Aika — Datum — Month and year Sivumäärä — Sidoantal — Number of pages Master’s thesis September 9, 2019 41 pages + 0 appendices Tiivistelmä — Referat — Abstract With the introduction of DNA sequencing over 40 years ago, we have been able to take a peek at our genetic material. Even though we have had a long time to develop sequencing strategies further, we are still unable to read the whole genome in one go. Instead, we are able to gather smaller pieces of the genetic material, which we can then use to reconstruct the original genome with a process called genome assembly. As a result of the genome assembly we often obtain multiple long sequences representing different regions of the genome, which are called contigs. Even though a genome often consists of a few separate DNA molecules (chromosomes), the number of obtained contigs outnumbers them substantially, meaning our reconstruction of the genome is not perfect. The resulting contigs can afterwards be refined by ordering, orienting and scaffolding them using additional information about the genome, which is often done manually by hand. The assembly process can also be guided automatically with the additional information, and in this thesis we are introducing a method that utilizes optical maps to aid us assemble the genome more accurately. -
ISBRA 2012 Short Abstracts
1 ISBRA 20 2 SHORT ABSTRACTS 8TH INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS RESEARCH AND APPLICATIONS May 21-23, 2012 University of Texas at Dallas, Dallas, TX http://www.cs.gsu.edu/isbra12/ Symposium Organizers Steering Committee Dan Gusfield, University of California, Davis Ion Mandoiu, University of Connecticutt Yi Pan, Georgia State University Marie-France Sagot, INRIA Alex Zelikovsky, Georgia State University General Chairs Ovidiu Daesku, University of Texas at Dallas Raj Sunderraman, Georgia State University Program Chairs Leonidas Bleris, University of Texas at Dallas Ion Mandoiu, University of Connecticut Russell Schwartz, Carnegie Mellon University Jianxin Wang, Central South University Publicity Chair Sahar Al Seesi, University of Connecticut Finance Chairs Anu Bourgeois, Georgia State University Raj Sunderraman, Georgia State University Web Master, Web Design Piyaphol Phoungphol J. Steven Kirtzic Sponsors NATIONAL SCIENCE DEPARTMENT OF COMPUTER SCIENCE DEPARTMENT OF COMPUTER SCIENCE FOUNDATION GEORGIA STATE UNIVESITY UNIVERSITY OF TEXAS AT DALLAS i Program Committee Members Srinivas Aluru, Iowa State University Allen Holder, Rose-Hulman Istitute of S. Cenk Sahinalp, Simon Fraser Danny Barash, Ben-Gurion Technology University University Jinling Huang, Eastern Carolina David Sankoff, University of Ottawa Robert Beiko, Dalhousie University University Russell Schwartz, Carnegie Mellon Anne Bergeron, Universite du Lars Kaderali, University of University Quebec a Montreal Heidelberg Joao Setubal, Virginia Bioinformatics Iyad Kanj, -
Saugata Basu Curriculum Vitae
Saugata Basu Curriculum Vitae Education 1991–1996 Phd, Courant Institute, New York University, New York. 1987–1991 B. Tech, Computer Science and Engineering, Indian Institute of Technology, Kharagpur. Phd thesis title Algorithms in Semi-algebraic Geometry supervisor Professor Richard Pollack Experience 2008–current Professor, Department of Mathematics and Department of Computer Science, Purdue University, West Lafayette, (Math 90%, Computer Science 10%). 2008–2010 Professor, School of Mathematics and College of Computing, Georgia Institute of Technology, Atlanta, (Math 75%, Computer Science 25%). (On leave) 2004–2008 Associate Professor, School of Mathematics and College of Computing, Georgia Institute of Technology, Atlanta, tenured (Math 75%, Computer Science 25%). 2000–2004 Assistant Professor, School of Mathematics and College of Computing, Georgia Institute of Technology, Atlanta, tenure-track (Math 75%, Computer Science 25%). 1998–2000 Assistant Professor, Department of Mathematics, University of Michigan, Ann Arbor, (non-tenure-track). 1997–1998 Post-doctoral Fellow (currently called Goldstine Fellowship), Mathematical Sciences Department, IBM T.J. Watson Research Center, Yorktown Heights. 1996–1997 Post-doctoral Fellow, Mathematical Sciences Research Institute, Berkeley. 150 N. University Street – West Lafayette, IN 47907-2067 – USA Ó +1 (765) 494 8798 • ƒ +1 (765) 494 0548 Q [email protected] • saugatabasu.org • 7 SaugataBasu4 Visiting positions and short visits Mar 19-23, Visiting Professor, Indian Statistical Institute, Stat-Math Unit, Kolkata, India. 2018 Jan-Feb, Visiting Professor, Institute Henri Poincaré, Paris, France, Trimester on Model 2018 theory, combinatorics and valued fields. Aug-Dec, Visiting Scientist, Simon’s Institute for the Theory of Computing, University of 2014 California, Berkeley, Program on Algorithms and Complexity in Algebraic Geometry. -
American Association for the Advancement of Science
Bridging Science and Society aaas annual report | 2010 The American Association for the Advancement of Science (AAAS) is the world’s largest general scientific society and publisher of the journal Science (www.sciencemag.org) as well as Science Translational Medicine (www.sciencetranslationalmedicine.org) and Science Signaling (www.sciencesignaling.org). AAAS was founded in 1848 and includes some 262 affiliated societies and academies of science, serving 10 million individuals. Science has the largest paid circulation of any peer- reviewed general science journal in the world, with an estimated total readership of 1 million. The non-profit AAAS (www.aaas.org) is open to all and fulfills its mission to “advance science and serve society” through initiatives in science policy; international programs; science education; and more. For the latest research news, log onto EurekAlert!, www.eurekalert.org, the premier science- news Web site, a service of AAAS. American Association for the Advancement of Science 1200 New York Avenue, NW Washington, DC 20005 USA Tel: 202-326-6440 For more information about supporting AAAS, Please e-mail [email protected], or call 202-326-6636. The cover photograph of bridge construction in Kafue, Zambia, was captured in August 2006 by Alan I. Leshner. Bridge enhancements were intended to better connect a grass airfield with the Kafue National Park to help foster industry by providing tourists with easier access to new ecotourism camps. [FSC MixedSources logo / Rainforest Alliance Certified / 100 percent green