EXPRESS LETTER Skeletal Isotopic Responses of the Scleractinian Coral
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Microbiomes of Gall-Inducing Copepod Crustaceans from the Corals Stylophora Pistillata (Scleractinia) and Gorgonia Ventalina
www.nature.com/scientificreports OPEN Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata Received: 26 February 2018 Accepted: 18 July 2018 (Scleractinia) and Gorgonia Published: xx xx xxxx ventalina (Alcyonacea) Pavel V. Shelyakin1,2, Sofya K. Garushyants1,3, Mikhail A. Nikitin4, Sofya V. Mudrova5, Michael Berumen 5, Arjen G. C. L. Speksnijder6, Bert W. Hoeksema6, Diego Fontaneto7, Mikhail S. Gelfand1,3,4,8 & Viatcheslav N. Ivanenko 6,9 Corals harbor complex and diverse microbial communities that strongly impact host ftness and resistance to diseases, but these microbes themselves can be infuenced by stresses, like those caused by the presence of macroscopic symbionts. In addition to directly infuencing the host, symbionts may transmit pathogenic microbial communities. We analyzed two coral gall-forming copepod systems by using 16S rRNA gene metagenomic sequencing: (1) the sea fan Gorgonia ventalina with copepods of the genus Sphaerippe from the Caribbean and (2) the scleractinian coral Stylophora pistillata with copepods of the genus Spaniomolgus from the Saudi Arabian part of the Red Sea. We show that bacterial communities in these two systems were substantially diferent with Actinobacteria, Alphaproteobacteria, and Betaproteobacteria more prevalent in samples from Gorgonia ventalina, and Gammaproteobacteria in Stylophora pistillata. In Stylophora pistillata, normal coral microbiomes were enriched with the common coral symbiont Endozoicomonas and some unclassifed bacteria, while copepod and gall-tissue microbiomes were highly enriched with the family ME2 (Oceanospirillales) or Rhodobacteraceae. In Gorgonia ventalina, no bacterial group had signifcantly diferent prevalence in the normal coral tissues, copepods, and injured tissues. The total microbiome composition of polyps injured by copepods was diferent. -
Guide to the Identification of Precious and Semi-Precious Corals in Commercial Trade
'l'llA FFIC YvALE ,.._,..---...- guide to the identification of precious and semi-precious corals in commercial trade Ernest W.T. Cooper, Susan J. Torntore, Angela S.M. Leung, Tanya Shadbolt and Carolyn Dawe September 2011 © 2011 World Wildlife Fund and TRAFFIC. All rights reserved. ISBN 978-0-9693730-3-2 Reproduction and distribution for resale by any means photographic or mechanical, including photocopying, recording, taping or information storage and retrieval systems of any parts of this book, illustrations or texts is prohibited without prior written consent from World Wildlife Fund (WWF). Reproduction for CITES enforcement or educational and other non-commercial purposes by CITES Authorities and the CITES Secretariat is authorized without prior written permission, provided the source is fully acknowledged. Any reproduction, in full or in part, of this publication must credit WWF and TRAFFIC North America. The views of the authors expressed in this publication do not necessarily reflect those of the TRAFFIC network, WWF, or the International Union for Conservation of Nature (IUCN). The designation of geographical entities in this publication and the presentation of the material do not imply the expression of any opinion whatsoever on the part of WWF, TRAFFIC, or IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership are held by WWF. TRAFFIC is a joint program of WWF and IUCN. Suggested citation: Cooper, E.W.T., Torntore, S.J., Leung, A.S.M, Shadbolt, T. and Dawe, C. -
Mirror-Image Fossils Reveal Colony Form of Extinct Curaçao Isopora
Mirror-image fossils reveal colony form of extinct Curac¸ao Isopora Received: 12 January 2009 / Accepted: 25 March 2009 / Published online: 18 April 2009 Ó Springer-Verlag 2009 The extinct Caribbean coral species Isopora curacaoensis Budd and Wal- lace, 2008 occurred during ~6–3 Ma (Mio-Pliocene). It is found in Curac¸ao, Netherlands Antilles, with its congener Isopora ginsburgi Budd and Wallace, 2008 (~6–2 Ma). These are the earliest recorded occurrences of Isopora worldwide. Until now Isopora curacaoensis was known only from broken branches, which did not indicate any aspect of overall colony shape. On a visit to the Salina Sint Michiel, in the Seroe Domi Formation of Curac¸ao, in July 2008, a large rock with a broken section was found to contain numerous fossils of Isopora curacaoensis, in which the axes of the corallites and some of the coenosteum had been replaced, forming casts. Some of these had been split into left and right mirror-image pieces (Fig. 1). One was a large section of colony (approx. 200 · 200 mm), showing a full branching unit including vertical branch base, horizontally extending branch and a secondary series of vertical branches (Fig. 1b, c), indicating that this colony had an open arborescent or ‘candelabra’ form, similar to that seen in some living specimens of Isopora togianensis in Sulawesi, Indonesia (Wallace et al. 2007). The site is dated as early–mid Pliocene, absolute age range of 5.6–3 Ma (Budd et al. 1998). Also found here were the modern Acropora cervicornis and A. palmata, and the extinct A. -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E. -
Scleractinia Fauna of Taiwan I
Scleractinia Fauna of Taiwan I. The Complex Group 台灣石珊瑚誌 I. 複雜類群 Chang-feng Dai and Sharon Horng Institute of Oceanography, National Taiwan University Published by National Taiwan University, No.1, Sec. 4, Roosevelt Rd., Taipei, Taiwan Table of Contents Scleractinia Fauna of Taiwan ................................................................................................1 General Introduction ........................................................................................................1 Historical Review .............................................................................................................1 Basics for Coral Taxonomy ..............................................................................................4 Taxonomic Framework and Phylogeny ........................................................................... 9 Family Acroporidae ............................................................................................................ 15 Montipora ...................................................................................................................... 17 Acropora ........................................................................................................................ 47 Anacropora .................................................................................................................... 95 Isopora ...........................................................................................................................96 Astreopora ......................................................................................................................99 -
Coral Communities at Lizard Island, Great Barrier Reef, Australia 57-67 ©Verein Zur Förderung Der Paläontologie Am Institut Für Paläontologie, Geozentrum Wien Beitr
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Beiträge zur Paläontologie Jahr/Year: 1996 Band/Volume: 21 Autor(en)/Author(s): Kleemann Karl Artikel/Article: Coral Communities at Lizard Island, Great Barrier Reef, Australia 57-67 ©Verein zur Förderung der Paläontologie am Institut für Paläontologie, Geozentrum Wien Beitr. Paläont., 21:57-67, Wien 1996 Coral Communities at Lizard Island, Great Barrier Reef, Australia Korallengemeinschaften auf der Lizard Insel, Großes Barriere Riff, Australien by Karl KLEEMANN* KLEEMANN, K., 1996. Coral Communities at Lizard Island, Great Barrier Reef, Australia. — Beitr. Palaont., 21:57-67, 2 Abb., 2 Tab., 2 Taf., Wien. Summary North Reel In general, the reefs at Lizard Island are dominated by Acropora. In part of the lagoon, Porites becomes the commonest and probably most important reefbuilder. In spite of the overall dominance of Acropora, the massive genera probably contribute more to the frame building. Probably more of their carbonate production keeps in place, while that of Acropora will be broken down, turned into sediment, and shifted away. Occurrence of certain genera can characterize Lizard reef localities: e.g., Porites (Synaraea) and Heliopora at a larger patch reef in the lagoon (RP lagoon); large Diploastrea colonies in steep reef walls, usually below 3 m, at more exposed sites (Site WM); common and large colonies of encrusting Montipora at a shallow slope (N Palfrey Is.) in about 3 m depth; and increased abundance of Goniastrea (Site C). In the hierarchical cluster analysis of 33 transects, we find two main clusters in the coral distribution, one with >50 % Acropora of the live scleractinian cover, and one with <50 %. -
Community Assembly and Functions of the Coral Skeleton Microbiome
Beneath the surface: community assembly and functions of the coral skeleton microbiome Francesco Ricci1, Vanessa Rossetto Marcelino2, Linda L. Blackall1, Michael Kühl3,4, Monica Medina5, Heroen Verbruggen1# 1 - School of BioSciences, University of Melbourne, Parkville 3010, Australia 2 - Marie Bashir Institute for Infectious Diseases and Biosecurity, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia 3 - Marine Biological Section, University of Copenhagen, Strandpromenaden 5, DK-3000 Helsingør, Denmark 4 - Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia 5 - Pennsylvania State University, University Park, PA 16802, USA # - corresponding author: [email protected] Author email addresses: Francesco Ricci ([email protected]), Vanessa Rossetto Marcelino ([email protected]), Linda Blackall ([email protected]), Michael Kühl ([email protected]), Monica Medina ([email protected]), Heroen Verbruggen ([email protected]) Abstract Coral microbial ecology is a burgeoning field, driven by the urgency of understanding coral health and slowing reef loss due to climate change. Coral resilience depends on its microbiota, and both the tissue and the underlying skeleton are home to a rich biodiversity of eukaryotic, bacterial and archaeal species that form an integral part of the coral holobiont. New techniques now enable detailed studies of the endolithic habitat, and our knowledge of the skeletal microbial community and its eco-physiology is increasing rapidly, with multiple lines of evidence for the importance of the skeletal microbiota in coral health and functioning. Here, we review the roles these organisms play in the holobiont, including nutritional exchanges with the coral host and decalcification of the host skeleton. -
Conservation of Reef Corals in the South China Sea Based on Species and Evolutionary Diversity
Biodivers Conserv DOI 10.1007/s10531-016-1052-7 ORIGINAL PAPER Conservation of reef corals in the South China Sea based on species and evolutionary diversity 1 2 3 Danwei Huang • Bert W. Hoeksema • Yang Amri Affendi • 4 5,6 7,8 Put O. Ang • Chaolun A. Chen • Hui Huang • 9 10 David J. W. Lane • Wilfredo Y. Licuanan • 11 12 13 Ouk Vibol • Si Tuan Vo • Thamasak Yeemin • Loke Ming Chou1 Received: 7 August 2015 / Revised: 18 January 2016 / Accepted: 21 January 2016 Ó Springer Science+Business Media Dordrecht 2016 Abstract The South China Sea in the Central Indo-Pacific is a large semi-enclosed marine region that supports an extraordinary diversity of coral reef organisms (including stony corals), which varies spatially across the region. While one-third of the world’s reef corals are known to face heightened extinction risk from global climate and local impacts, prospects for the coral fauna in the South China Sea region amidst these threats remain poorly understood. In this study, we analyse coral species richness, rarity, and phylogenetic Communicated by Dirk Sven Schmeller. Electronic supplementary material The online version of this article (doi:10.1007/s10531-016-1052-7) contains supplementary material, which is available to authorized users. & Danwei Huang [email protected] 1 Department of Biological Sciences and Tropical Marine Science Institute, National University of Singapore, Singapore 117543, Singapore 2 Naturalis Biodiversity Center, PO Box 9517, 2300 RA Leiden, The Netherlands 3 Institute of Biological Sciences, Faculty of -
Paulay Et Al 1999
Micronesica 31(2):109–124. 1999 Patterns and consequences of coral bleaching in Micronesia (Majuro and Guam) in 1992-1994 GUSTAV PAULAY Marine Laboratory University of Guam Mangilao, Guam 96923 USA [email protected] AND YEHUDA BENAYAHU Dept. of Zoology, George S. Wise Faculty of Life Sciences Tel Aviv University Tel Aviv 69978 Israel [email protected] Abstract—Loss of zooxanthellar symbionts from coral hosts, or “bleaching” has been increasingly noted since the 1980’s, and often attributed to elevated sea water temperatures. Here we document the first bleaching events recorded in Micronesia, one on Majuro Atoll in 1992 and another on Guam in 1994. The first caused up to 99% mortality of Acropora, altering the community structure of affected lagoonal fringing reefs from Acropora-and-Porites-dominated to Porites-dominated. Mortality of other scleractinians was low, but the common soft coral Lobophytum pauciflorum underwent large-scale dieback. Mortality in Majuro lagoon increased from west to east, peaking in the metropolitan area at the east end. The bleaching event on Guam was island-wide, in the warm season but not associated with unusually high temperatures, and associated with little mortality. Fifty-one of 75 surveyed taxa of corals bleached on Guam and 15 of 25 taxa on Majuro. Both scleractini- ans and alcyonaceans exhibited consistent species-specific sensitivity to bleaching among these and other locations in the tropical Pacific basin. The cause of these bleaching events is unclear, but the pattern on Majuro is suggestive of anthropogenic influence. Lack of bleaching at rural Mili Atoll 25 km from Majuro and lack of above average temperatures on Guam and Majuro suggest that regional ocean warming was not involved in either event. -
Downloaded from the NCBI Genome Database, Dehyde, and Post-Fixed in 1% Oso4
Yang et al. Microbiome (2019) 7:3 https://doi.org/10.1186/s40168-018-0616-z RESEARCH Open Access Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera Shan-Hua Yang1,2,3,4, Kshitij Tandon1,5,6, Chih-Ying Lu1, Naohisa Wada1, Chao-Jen Shih7, Silver Sung-Yun Hsiao8,9, Wann-Neng Jane10, Tzan-Chain Lee1, Chi-Ming Yang1, Chi-Te Liu11, Vianney Denis12, Yu-Ting Wu13, Li-Ting Wang7, Lina Huang7, Der-Chuen Lee8, Yu-Wei Wu14, Hideyuki Yamashiro2 and Sen-Lin Tang1* Abstract Background: Endolithic microbes in coral skeletons are known to be a nutrient source for the coral host. In addition to aerobic endolithic algae and Cyanobacteria, which are usually described in the various corals and form a green layer beneath coral tissues, the anaerobic photoautotrophic green sulfur bacteria (GSB) Prosthecochloris is dominant in the skeleton of Isopora palifera. However, due to inherent challenges in studying anaerobic microbes in coral skeleton, the reason for its niche preference and function are largely unknown. Results: This study characterized a diverse and dynamic community of endolithic microbes shaped by the availability of light and oxygen. In addition, anaerobic bacteria isolated from the coral skeleton were cultured for the first time to experimentally clarify the role of these GSB. This characterization includes GSB’s abundance, genetic and genomic profiles, organelle structure, and specific metabolic functions and activity. Our results explain the advantages endolithic GSB receive from living in coral skeletons, the potential metabolic role of a clade of coral- associated Prosthecochloris (CAP) in the skeleton, and the nitrogen fixation ability of CAP. -
Bulletin of the United States Fish Commission
THE STONY CORALS OE THE PORTO RICAN WATERS. BY T: WAYLAND VAUGHAN. CONTENTS. Page. Page. Introduction 291 Discussion of Species—Continued. Table of Species 291 Class Anthozoa—Continued. Discussion of Species 292-318 Order Actiniae—Continued. Class Anthozoa 292 Family Favidae—Continued. Order Actiniae 292 Genus Manicina 305 Family Caryophyllidae 292 Manieina areolata 305 Genus Caryophyllia 292 Genus Platygyra 305,306 Caryophyllia berteriana? 292 Platygyra viridis 306-308 Genus Paracyathus 292 Family Agaricidse 309 Paracyathus de filippii 292 Genus Siderastrea 309 Genus Oyathoceras 293 Siderastrea radians 309 Cyathoceras portoricensis 293 Siderastrea siderea 309, 310 Genus Deltocyathus 293 Genus Agaricia 310 Deltocyathus italicus 293 Agaricia elephantotus 310 Agaricia sp 310, 311 Family Oculinidae 294 Agaricia cailleti 311 Genus Oculina 294 Genus Diaseris 311 Oculina diffusa? var 294 “ Diaseris ” crispa 311 Family Stylophoridse 294 Family Isoporidae 312 Genus Axhelia 294 Genus Isopora 312 Axhelia asperula 294 Isopora muricata 312, 313 Axhelia mirabilis 295 Isopora muricata ss. (== cervicornis) 313 Family Eusmilidae 295 Isopora muricata forma prolifera 313 Genus Meandrina 295 Isopora muricata forma palmata 313, 314 Meandrina maeandrites 296,297 Family Poritidae 314 Family Astrangidae 298 Genus Porites 314 Genus Cladocora 298 Porites porites 314-316 Cladocora arbuscula 298 Porites porites forma clavaria 316 Cladocora debilis 298 Porites porites forma furcata 316 Genus Astrangia 298 Porites porites forma divaricata 316 Astrangia solitaria? var. portoricensis 298,299 Porites astreoides 317 Astrangia astreiformis 300 Porites astreoides forma a 317 Family Orbicellidae 300 Porites astreoides forma /3 318 Genus Orbicella 300 Class Hydrozoa 318 Orbicella acropora var 301 Order Hydrocoral linse 318 Family Favidae 302 Family Milleporidae 318 Genus Favia 303 Genus Millepora 318 Favia fragum 303, 304 Millepora alcicornis 318 290 . -
From Acropora (Isopora) Brueggemanni (Brook, 1893) (Anthozoa: Acroporidae), a Case of Host Specificity in a Generalist Genus
ZM077 001-008 | achituv 15-01-2007 07:43 Pagina 1 Cantellius cardenae spec. nov. (Cirripedia: Pyrgomatinae) from Acropora (Isopora) brueggemanni (Brook, 1893) (Anthozoa: Acroporidae), a case of host specificity in a generalist genus Y. Achituv & B.W. Hoeksema Achituv, Y. & B.W. Hoeksema. Cantellius cardenae spec. nov. (Cirripedia: Pyrgomatinae) from Acropora (Isopora) brueggemanni (Brook, 1893) (Anthozoa: Acroporidae), a case of host specificity in a generalist genus. Zool. Med. Leiden 77 (1), 29.viii.2003: 1-8, figs 1-4, table 1.— ISSN 0024-0672. Yair Achituv, Faculty of Life Sciences, Bar-Ilan University, Ramat Gan 52900, Israel (e-mail: achity@mail. biu.ac.il). Bert W. Hoeksema, National Museum of Natural History, P.O. Box 9517. 2300 RA Leiden, The Nether- lands (e-mail: [email protected]). Key words: barnacle; corals; association; Cirripedia; Pyrgomatidae; Scleractinia; Acroporidae. A new species of coral inhabiting barnacle Cantellius cardenae spec. nov. (Crustacea, Cirripedia: Pyrgo- matinae) is described. This barnacle was found on the staghorn coral Acropora (Isopora) brueggemanni (Scleractinia: Acroporidae). It is characterized by having transversally elongated scuta and narrow terga with a spur length more than half of the total tergal length. This species belongs to the secundus group of Cantellius, which includes barnacles with transversally elongated scuta, and which are limit- ed to the Acroporidae. The distribution of C. cardenae supports the hypothesis that structurally special- ized pyrgomatines occupy a more limited variety of hosts than do morphologicaly generalized ones. Introduction The family Pyrgomatidae consist of barnacles largely limited to stony corals, (Scle- ractinia: Anthozoa), but some species occur on Milleporidae and Stylasteridae (Hydrozoa), and one occurs on a sponge (Porifera).