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Publication List – Michael Wagner
Publication list – Michael Wagner I have published between 1992 – April 2021 in my six major research fields (nitrification, single cell microbiology, microbiome, wastewater microbiology, endosymbionts, sulfate reduction) 269 papers and more than 30 book chapters. According to Scopus (April 2021) my publications have been cited 40,640 (ISI: 37,997; Google Scholar: 59,804) and I have an H-index of 107 (ISI: 103; Google Scholar: 131). Seven of my publications appeared in Nature (plus a News & Views piece), three in Science, 13 in PNAS (all direct submission) and two in PLoS Biology. More info about my publications can be found at: Scopus: https://www.scopus.com/authid/detail.uri?authorId=57200814774 ResearcherID: https://publons.com/researcher/2814586/michael-wagner/ GoogleScholar: https://scholar.google.com/citations?user=JF6OQ_0AAAAJ&hl=de 269. Neuditschko B, Legin AA, Baier D, Schintlmeister A, Reipert S, Wagner M, Keppler BK, Berger W, Meier-Menches SM, Gerner C. 2021. Interaction with ribosomal proteins accompanies stress induction of the anticancer metallodrug BOLD-100/KP1339 in the endoplasmic reticulum. Angew Chem Int Ed Engl, 60:5063-5068 268. Willeit P, Krause R, Lamprecht B, Berghold A, Hanson B, Stelzl E, Stoiber H, Zuber J, Heinen R, Köhler A, Bernhard D, Borena W, Doppler C, von Laer D, Schmidt H, Pröll J, Steinmetz I, Wagner M. 2021. Prevalence of RT-qPCR-detected SARS-CoV-2 infection at schools: First results from the Austrian School-SARS-CoV-2 prospective cohort study. The Lancet Regional Health - Europe, 5:100086 267. Lee KS, Pereira FC, Palatinszky M, Behrendt L, Alcolombri U, Berry D, Wagner M, Stocker R. -
Tsuchida S, Suzuki Y, Fujiwara Y, Kawato M, Uematsu K, Yamanaka T, Mizota
Tsuchida S, Suzuki Y, Fujiwara Y, Kawato M, Uematsu K, Yamanaka T, Mizota C, Yamamoto H (2011) Epibiotic association between filamentous bacteria and the vent-associated galatheid crab, Shinkaia crosnieri (Decapoda: Anomura). J Mar Biol Ass 91:23-32 藤原義弘 (2010) 鯨骨が育む深海の小宇宙ー鯨骨生物群集研究の最前線ー.ビオ フィリア 6(2): 25-29. 藤原義弘 (2010) 深海のとっても変わった生きもの.幻冬舎. 藤原義弘・河戸勝 (2010) 鯨骨生物群集と二つの「飛び石」仮説.高圧力の科 学と技術 20(4): 315-320. 土屋正史・力石嘉人・大河内直彦・高野淑識・小川奈々子・藤倉克則・吉田尊 雄・喜多村稔・Dhugal J. Lindsay・藤原義弘・野牧秀隆・豊福高志・山本啓之・ 丸山正・和田英太郎 (2010) アミノ酸窒素同位体比に基づく海洋生態系の食物網 構造の解析.2010年度日本地球化学会年会. Watanabe H, Fujikura K, Kojima S, Miyazaki J-i, Fujiwara Y (2009) Japan: Vents and seeps in close proximity In: Topic in Geobiology. Springer, p in press Kinoshita G, Kawato M, Shinozaki A, Yamamoto T, Okoshi K, Kubokawa K, Yamamoto H, Fujiwara Y (2010) Protandric hermaphroditism in the whale-fall mussel Adipicola pacifica. Cah Biol Mar 51:in press Miyazaki M, Kawato M, Umezu Y, Pradillon F, Fujiwara Y (2010) Isolation of symbiont-like bacteria from Osedax spp. 58p. Kawato M, Fujiwara Y (2010) Discovery of chemosymbiotic ciliate Zoothamnium niveum from a whale fall in Japan. Japan Geoscience Union Meeting 2010. Fujiwara Y, Kawato M, Miyazaki M, (2010) Diversity and evolution of symbioses at whale falls. Memorial Symposium for the 26th International Prize for Biology ”Biology of Symbiosis”. 藤原 義弘,河戸 勝,山中 寿朗 (2010) 鯨骨産イガイ類における共生様式の進 化.日本地球惑星科学連合2010年大会. Nishimura A, Yamamoto T, Fujiwara Y, Masaru Kawato, Pradillon Florence and Kaoru Kubokawa (2010) Population Structure of Protodrilus sp. (Polychaeta) in Whale Falls. Trench Connection: International Symposium on the Deepest Environment on Earth. 永堀 敦志,藤原 義弘,河戸 勝 (2010) 鯨骨産二枚貝ヒラノマクラの鰓上皮細 胞の貪食能力に関する研究.日本地球惑星科学連合2010年大会. Shinozaki A, Kawato M, Noda C, Yamamoto T, Kubokawa K, Yamanaka T, Tahara J, Nakajoh H, Aoki T, Miyake H, Fujiwara Y (2010) Reproduction of the vestimentiferan tubeworm Lamellibrachia satsuma inhabiting a whale vertebra in an aquarium. -
Metagenomic Analysis Shows the Presence of Bacteria Related To
ORIGINAL RESEARCH published: 28 May 2018 doi: 10.3389/fmars.2018.00171 Metagenomic Analysis Shows the Presence of Bacteria Related to Free-Living Forms of Sulfur-Oxidizing Chemolithoautotrophic Symbionts in the Rhizosphere of the Seagrass Zostera marina Catarina Cúcio 1, Lex Overmars 1, Aschwin H. Engelen 2 and Gerard Muyzer 1* 1 Edited by: Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands, 2 Marine Ecology and Evolution Research Group, Jillian Petersen, CCMAR-CIMAR Centre for Marine Sciences, Universidade do Algarve, Faro, Portugal Universität Wien, Austria Reviewed by: Stephanie Markert, Seagrasses play an important role as ecosystem engineers; they provide shelter to many Institut für Marine Biotechnologie, animals and improve water quality by filtering out nutrients and by controlling pathogens. Germany Annette Summers Engel, Moreover, their rhizosphere promotes a myriad of microbial interactions and processes, University of Tennessee, Knoxville, which are dominated by microorganisms involved in the sulfur cycle. This study United States provides a detailed insight into the metabolic sulfur pathways in the rhizobiome of the *Correspondence: Gerard Muyzer seagrass Zostera marina, a dominant seagrass species across the temperate northern [email protected] hemisphere. Shotgun metagenomic sequencing revealed the relative dominance of Gamma- and Deltaproteobacteria, and comparative analysis of sulfur genes identified a Specialty section: This article was submitted to higher abundance of genes related to sulfur oxidation than sulfate reduction. We retrieved Aquatic Microbiology, four high-quality draft genomes that are closely related to the gill symbiont of the clam a section of the journal Solemya velum, which suggests the presence of putative free-living forms of symbiotic Frontiers in Marine Science bacteria. -
Nanosims and Tissue Autoradiography Reveal Symbiont Carbon fixation and Organic Carbon Transfer to Giant Ciliate Host
The ISME Journal (2018) 12:714–727 https://doi.org/10.1038/s41396-018-0069-1 ARTICLE NanoSIMS and tissue autoradiography reveal symbiont carbon fixation and organic carbon transfer to giant ciliate host 1 2 1 3 4 Jean-Marie Volland ● Arno Schintlmeister ● Helena Zambalos ● Siegfried Reipert ● Patricija Mozetič ● 1 4 2 1 Salvador Espada-Hinojosa ● Valentina Turk ● Michael Wagner ● Monika Bright Received: 23 February 2017 / Revised: 3 October 2017 / Accepted: 9 October 2017 / Published online: 9 February 2018 © The Author(s) 2018. This article is published with open access Abstract The giant colonial ciliate Zoothamnium niveum harbors a monolayer of the gammaproteobacteria Cand. Thiobios zoothamnicoli on its outer surface. Cultivation experiments revealed maximal growth and survival under steady flow of high oxygen and low sulfide concentrations. We aimed at directly demonstrating the sulfur-oxidizing, chemoautotrophic nature of the symbionts and at investigating putative carbon transfer from the symbiont to the ciliate host. We performed pulse-chase incubations with 14C- and 13C-labeled bicarbonate under varying environmental conditions. A combination of tissue autoradiography and nanoscale secondary ion mass spectrometry coupled with transmission electron microscopy was used to fi 1234567890();,: follow the fate of the radioactive and stable isotopes of carbon, respectively. We show that symbiont cells x substantial amounts of inorganic carbon in the presence of sulfide, but also (to a lesser degree) in the absence of sulfide by utilizing internally stored sulfur. Isotope labeling patterns point to translocation of organic carbon to the host through both release of these compounds and digestion of symbiont cells. The latter mechanism is also supported by ultracytochemical detection of acid phosphatase in lysosomes and in food vacuoles of ciliate cells. -
Phylogenetic and Functional Characterization of Symbiotic Bacteria in Gutless Marine Worms (Annelida, Oligochaeta)
Phylogenetic and functional characterization of symbiotic bacteria in gutless marine worms (Annelida, Oligochaeta) Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften -Dr. rer. nat.- dem Fachbereich Biologie/Chemie der Universität Bremen vorgelegt von Anna Blazejak Oktober 2005 Die vorliegende Arbeit wurde in der Zeit vom März 2002 bis Oktober 2005 am Max-Planck-Institut für Marine Mikrobiologie in Bremen angefertigt. 1. Gutachter: Prof. Dr. Rudolf Amann 2. Gutachter: Prof. Dr. Ulrich Fischer Tag des Promotionskolloquiums: 22. November 2005 Contents Summary ………………………………………………………………………………….… 1 Zusammenfassung ………………………………………………………………………… 2 Part I: Combined Presentation of Results A Introduction .…………………………………………………………………… 4 1 Definition and characteristics of symbiosis ...……………………………………. 4 2 Chemoautotrophic symbioses ..…………………………………………………… 6 2.1 Habitats of chemoautotrophic symbioses .………………………………… 8 2.2 Diversity of hosts harboring chemoautotrophic bacteria ………………… 10 2.2.1 Phylogenetic diversity of chemoautotrophic symbionts …………… 11 3 Symbiotic associations in gutless oligochaetes ………………………………… 13 3.1 Biogeography and phylogeny of the hosts …..……………………………. 13 3.2 The environment …..…………………………………………………………. 14 3.3 Structure of the symbiosis ………..…………………………………………. 16 3.4 Transmission of the symbionts ………..……………………………………. 18 3.5 Molecular characterization of the symbionts …..………………………….. 19 3.6 Function of the symbionts in gutless oligochaetes ..…..…………………. 20 4 Goals of this thesis …….………………………………………………………….. -
Anaerobic Sulfur Oxidation Underlies Adaptation of a Chemosynthetic Symbiont
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.994798; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Anaerobic sulfur oxidation underlies adaptation of a chemosynthetic symbiont 2 to oxic-anoxic interfaces 3 4 Running title: chemosynthetic ectosymbiont’s response to oxygen 5 6 Gabriela F. Paredes1, Tobias Viehboeck1,2, Raymond Lee3, Marton Palatinszky2, 7 Michaela A. Mausz4, Siegfried Reipert5, Arno Schintlmeister2,6, Andreas Maier7, Jean- 8 Marie Volland1,*, Claudia Hirschfeld8, Michael Wagner2,9, David Berry2,10, Stephanie 9 Markert8, Silvia Bulgheresi1,# and Lena König1# 10 11 1 University of Vienna, Department of Functional and Evolutionary Ecology, 12 Environmental Cell Biology Group, Vienna, Austria 13 14 2 University of Vienna, Center for Microbiology and Environmental Systems Science, 15 Division of Microbial Ecology, Vienna, Austria 16 17 3 Washington State University, School of Biological Sciences, Pullman, WA, USA 18 19 4 University of Warwick, School of Life Sciences, Coventry, UK 20 21 5 University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Vienna, 22 Austria 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.994798; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Free-Living Marine Nematodes from San Antonio Bay (Río Negro, Argentina)
A peer-reviewed open-access journal ZooKeys 574: 43–55Free-living (2016) marine nematodes from San Antonio Bay (Río Negro, Argentina) 43 doi: 10.3897/zookeys.574.7222 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina) Gabriela Villares1, Virginia Lo Russo1, Catalina Pastor de Ward1, Viviana Milano2, Lidia Miyashiro3, Renato Mazzanti3 1 Laboratorio de Meiobentos LAMEIMA-CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina 2 Universidad Nacional de la Patagonia San Juan Bosco, sede Puerto Madryn. Boulevard Brown 3051, U9120ACF, Puerto Madryn, Argentina 3Centro de Cómputos CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina Corresponding author: Gabriela Villares ([email protected]) Academic editor: H-P Fagerholm | Received 18 November 2015 | Accepted 11 February 2016 | Published 28 March 2016 http://zoobank.org/3E8B6DD5-51FA-499D-AA94-6D426D5B1913 Citation: Villares G, Lo Russo V, Pastor de Ward C, Milano V, Miyashiro L, Mazzanti R (2016) Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina). ZooKeys 574: 43–55. doi: 10.3897/zookeys.574.7222 Abstract The dataset of free-living marine nematodes of San Antonio Bay is based on sediment samples collected in February 2009 during doctoral theses funded by CONICET grants. A total of 36 samples has been taken at three locations in the San Antonio Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for benthic biodiversity assessment of Patagonian nematodes as this area remains one of the least known regions. -
Morphology of Obligate Ectosymbionts Reveals Paralaxus Gen. Nov., a New
bioRxiv preprint doi: https://doi.org/10.1101/728105; this version posted August 7, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Harald Gruber-Vodicka 2 Max Planck Institute for Marine Microbiology, Celsiusstrasse 1; 28359 Bremen, 3 Germany, +49 421 2028 825, [email protected] 4 5 Morphology of obligate ectosymbionts reveals Paralaxus gen. nov., a 6 new circumtropical genus of marine stilbonematine nematodes 7 8 Florian Scharhauser1*, Judith Zimmermann2*, Jörg A. Ott1, Nikolaus Leisch2 and Harald 9 Gruber-Vodicka2 10 11 1Department of Limnology and Bio-Oceanography, University of Vienna, Althanstrasse 12 14, A-1090 Vienna, Austria 2 13 Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, 14 Germany 15 16 *Contributed equally 17 18 19 20 Keywords: Paralaxus, thiotrophic symbiosis, systematics, ectosymbionts, molecular 21 phylogeny, cytochrome oxidase subunit I, 18S rRNA, 16S rRNA, 22 23 24 Running title: “Ectosymbiont morphology reveals new nematode genus“ 25 Scharhauser et al. 26 27 bioRxiv preprint doi: https://doi.org/10.1101/728105; this version posted August 7, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Scharhauser et al. 2 28 Abstract 29 Stilbonematinae are a subfamily of conspicuous marine nematodes, distinguished by a 30 coat of sulphur-oxidizing bacterial ectosymbionts on their cuticle. -
Downloaded from on January 18, 2015
Downloaded from http://rspb.royalsocietypublishing.org/ on January 18, 2015 Proc. R. Soc. B (2007) 274, 2259–2269 doi:10.1098/rspb.2007.0631 Published online 27 July 2007 The effects of sulphide on growth and behaviour of the thiotrophic Zoothamnium niveum symbiosis Christian Rinke1,*, Raymond Lee2, Sigrid Katz1 and Monika Bright1 1Department of Marine Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria 2School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA Zoothamnium niveum (Ciliophora, Oligohymenophora) is a giant, colonial marine ciliate from sulphide-rich, shallow-water habitats, obligatorily associated with the ectosymbiotic, chemoautotrophic, sulphide-oxidizing bacterium ‘Candidatus Thiobios zoothamnicoli’. The aims of this study were to characterize the natural habitat and investigate growth, reproduction, survival and maintenance of the symbiosis from Corsica, France (Mediterranean Sea) using a flow-through respirometer providing stable chemical conditions. We were able to successfully cultivate the Z. niveum symbiosis during its entire lifespan and document K1 reproduction, whereby the optimum conditions were found to range from 3 to 33 mmol l SH2S in normoxic seawater. Starting with an inoculum of 13 specimens, we found up to 173 new specimens that were asexually produced after only 11 days. Observed mean lifespan of the Z. niveum colonies was approximately 11 days and mean colony size reached 51 branches, from which rapid host division rates of up to every 4.1 hours were calculated. Comparing the ectosymbiotic population from Z. niveum colonies collected from their natural habitat with those cultivated under optimal conditions, we found significant differences in the bacterial morphology and the frequency of dividing cells on distinct host parts, which is most likely caused by behaviour of the host ciliate. -
Lust Und Last Des Bezeichnens - • • Über Namen Aus Der Mikroskopischen Welt1
© Biologiezentrum Linz/Austria; download unter www.biologiezentrum.at Denisia 13 I 17.09.2004 I 383-402 Lust und Last des Bezeichnens - • • Über Namen aus der mikroskopischen Welt1 E. AESCHT Abstract: Delight and burden of naming - About names from the microscopic world. — A short history of desi- gnating mainly genera and species of ciliates (Ciliophora), which are relatively "large" and rich of characters, is gi- ven. True vernacular (genuine) names are understandably absent; German names have been established from 1755 to 1838 and in the last three decades of the 20lh century in scientific and popular literature. A first analysis from a linguistic point of view of about 1400 scientific names of type species shows that frequently metaphoric names have been applied referring to objects of everday use and somatic characters of well known animals including human beings. A nomenclaturally updated list of 271 species including German names is provided, of which numerous syn- onyms and homonyms have to be clarified cooperatively; 160 of these species are of saprobiological relevance and 119 refer to type species of genera. Malpractices of amateurs and scientists have been due to a confusion of nomen- clature, a formalized exact tool of designation, and taxonomy, the theory and practice of classifying organisms. It is argued that names in national languages may help to publicise the diversity and importance of microscopic orga- nisms; their description and labeling are a particular challenge to creative, recently underestimated linguistic com- petence. Key words: history of nomenclature, protozoans, ciliates (Ciliophora), scientific and vernacular names, populariza- tion, taxonomy. „Nur Namen! Aber Namen sind nicht Schall und Rauch. -
Zoothamnium Ignavum Sp
RESEARCH ARTICLE A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymeno- phorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls Lukas Schuster*, Monika Bright University of Vienna, Departmentof Limnology and Bio-Oceanography, Althanstraße 14, A-1090 Vienna, Austria * [email protected] a11111 Abstract Symbioses between ciliate hosts and prokaryote or unicellular eukaryote symbionts are widespread. Here, we report on a novel ciliate species within the genus Zoothamnium Bory de St. Vincent, 1824, isolated from shallow-water sunken wood in the North Adriatic Sea OPEN ACCESS (Mediterranean Sea), proposed as Zoothamnium ignavum sp. nov. We found this ciliate Citation: Schuster L, Bright M (2016) A Novel species to be associated with a novel genus of bacteria, here proposed as “Candidatus Colonial Ciliate Zoothamnium ignavum sp. nov. Navis piranensis” gen. nov., sp. nov. The descriptions of host and symbiont species are (Ciliophora, Oligohymeno-phorea) and Its based on morphological and ultrastructural studies, the SSU rRNA sequences, and in situ Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls. PLoS ONE hybridization with symbiont-specific probes. The host is characterized by alternate micro- 11(9): e0162834. doi:10.1371/journal.pone.0162834 zooids on alternate branches arising from a long, common stalk with an adhesive disc. Editor: Jonathan H. Badger, National Cancer Three different types of zooids are present: microzooids with a bulgy oral side, roundish to Institute,UNITED STATES ellipsoid macrozooids, and terminal zooids ellipsoid when dividing or bulgy when undividing. Received: June 9, 2016 The oral ciliature of the microzooids runs 1¼ turns in a clockwise direction around the peri- stomial disc when viewed from inside the cell and runs into the infundibulum, where it Accepted: August 29, 2016 makes another ¾ turn. -
Minireview Indigenous Ectosymbiotic Bacteria Associated with Diverse
Environmental Microbiology Reports (2010) doi:10.1111/j.1758-2229.2010.00136.x Minireview Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebratesemi4_136 1..10 Shana K. Goffredi* Historical documentation suggests that the prevalence Biology Department, Occidental College, 1600 Campus and possible importance of these associations, whether Rd, Los Angeles, CA 90041, USA. beneficial or detrimental, was realized long ago (Ander- son and Stephens, 1969; Johnson et al., 1971; Sochard et al., 1979). Today, there are many well-known ectosym- Summary bioses involving hosts within at least three subgroups of Symbioses involving bacteria and invertebrates con- the Ciliophora, one Euglenozoan,twoNematoda subfami- tribute to the biological diversity and high productiv- lies, three Mollusca families, two classes of Annelida, and ity of both aquatic and terrestrial environments. many Crustacea, including both decapods and cirripeds Well-known examples from chemosynthetic deep-sea (Buck et al., 2000; Polz et al., 2000; Dubilier et al., 2008). hydrothermal vent environments involve ectosymbi- The vent shrimp Rimicaris exoculata, for example, pos- otic microbes associated with the external surfaces of sesses dense bacteria on its carapace and mouthparts marine invertebrates. Some of these ectosymbioses (Van Dover et al., 1988). Once thought to be a monocul- confer protection or defence from predators or the ture of a single, pleomorphic epsilonproteobacterium, it is environment itself, some are nutritional in nature, and now known that the bacterial community includes two many still are of unknown function. Several recently dominant bacterial types, whatever the prevailing chemi- discovered hydrothermal vent invertebrates, includ- cal conditions surrounding the animal (Gebruk et al., ing two populations of yeti crab (Kiwa spp.), a limpet 1993; Polz and Cavanaugh, 1995; Struck et al., 2008).